Wall clock time and date at job start Tue Mar 31 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35853 * 116.99948 * 2 1 4 4 C 1.39435 * 119.78562 * 0.02562 * 3 2 1 5 5 C 1.37980 * 120.61485 * 179.74741 * 4 3 2 6 6 C 1.39142 * 120.17111 * 0.22908 * 5 4 3 7 7 C 1.47844 * 120.21787 * 180.02562 * 6 5 4 8 8 C 1.40068 * 120.93540 * 129.72121 * 7 6 5 9 9 C 1.37907 * 118.98300 * 179.72347 * 8 7 6 10 10 C 1.50704 * 119.54025 * 180.27305 * 9 8 7 11 11 N 1.31958 * 120.91123 * 0.56275 * 9 8 7 12 12 C 1.31954 * 122.07502 * 359.70831 * 11 9 8 13 13 C 1.50699 * 119.54349 * 179.97438 * 12 11 9 14 14 C 1.37903 * 120.91158 * 359.97438 * 12 11 9 15 15 C 1.41885 * 119.56705 * 0.02562 * 6 5 4 16 16 C 1.40916 * 120.30110 * 180.02562 * 15 6 5 17 17 H 1.08001 * 119.99705 * 333.37140 * 16 15 6 18 18 C 1.40092 * 120.00445 * 153.37651 * 16 15 6 19 19 N 1.30755 * 119.99660 * 343.81044 * 18 16 15 20 20 Si 1.86793 * 120.00135 * 163.81327 * 18 16 15 21 21 H 1.48498 * 109.47356 * 94.62819 * 20 18 16 22 22 H 1.48500 * 109.46934 * 214.62765 * 20 18 16 23 23 H 1.48501 * 109.47398 * 334.62822 * 20 18 16 24 24 C 1.37987 * 119.78485 * 180.26472 * 3 2 1 25 25 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47289 * 299.99728 * 1 2 3 27 27 H 1.09002 * 109.47516 * 60.00018 * 1 2 3 28 28 H 1.07998 * 119.69552 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.91838 * 180.25420 * 5 4 3 30 30 H 1.08005 * 120.50726 * 0.02562 * 8 7 6 31 31 H 1.09002 * 109.46679 * 270.27976 * 10 9 8 32 32 H 1.08999 * 109.47577 * 30.28272 * 10 9 8 33 33 H 1.09005 * 109.46949 * 150.28937 * 10 9 8 34 34 H 1.08997 * 109.47423 * 270.02208 * 13 12 11 35 35 H 1.09003 * 109.46975 * 30.02531 * 13 12 11 36 36 H 1.09003 * 109.47274 * 150.02152 * 13 12 11 37 37 H 1.08002 * 120.50785 * 179.97438 * 14 12 11 38 38 H 0.96992 * 119.99668 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.09660 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2819 2.3770 0.0005 5 6 1.8905 3.6154 0.0058 6 6 3.2785 3.7124 0.0058 7 6 3.9316 5.0388 0.0120 8 6 4.9388 5.3411 0.9372 9 6 5.5247 6.5891 0.9032 10 6 6.6140 6.9256 1.8889 11 7 5.1409 7.4944 0.0232 12 6 4.1926 7.2532 -0.8620 13 6 3.7986 8.3293 -1.8407 14 6 3.5570 6.0301 -0.9039 15 6 4.0630 2.5302 -0.0002 16 6 5.4699 2.6105 0.0003 17 1 5.9613 3.4782 -0.4145 18 6 6.2311 1.5649 0.5387 19 7 5.6657 0.6766 1.3138 20 14 8.0537 1.4399 0.1493 21 1 8.8361 2.1005 1.2247 22 1 8.4439 0.0099 0.0604 23 1 8.3301 2.1099 -1.1468 24 6 3.4239 1.2775 -0.0055 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2040 2.3107 0.0014 29 1 1.2879 4.5117 0.0103 30 1 5.2551 4.6065 1.6630 31 1 6.1705 7.3515 2.7889 32 1 7.1625 6.0199 2.1476 33 1 7.2966 7.6491 1.4430 34 1 2.9978 8.9332 -1.4139 35 1 4.6601 8.9635 -2.0496 36 1 3.4529 7.8695 -2.7666 37 1 2.7814 5.8399 -1.6310 38 1 6.1928 -0.0471 1.6869 39 1 4.0103 0.3706 -0.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241992911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:55 Heat of formation + Delta-G solvation = -3.233602 kcal Electronic energy + Delta-G solvation = -21620.485927 eV Core-core repulsion = 18492.268756 eV Total energy + Delta-G solvation = -3128.217172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.67164 -38.72053 -36.55227 -33.78029 -33.15622 -32.31430 -29.88824 -28.62204 -28.55534 -26.49703 -26.07836 -25.30096 -22.23926 -21.41017 -20.82187 -19.40752 -17.82916 -16.25210 -15.79145 -15.56267 -15.15408 -14.88752 -14.76215 -14.64785 -14.17227 -13.53639 -13.15770 -12.93163 -12.86678 -12.56421 -12.40902 -12.12109 -11.92676 -11.75297 -11.51808 -11.44027 -11.27849 -11.18025 -11.05143 -10.89089 -10.61729 -10.17896 -10.04488 -9.68635 -9.28575 -8.79238 -8.71083 -8.09393 -7.61453 -7.04725 -6.77957 -4.55072 1.81566 1.87743 2.66993 2.94735 3.00674 3.04761 3.12168 3.82227 4.22417 4.40890 4.49564 4.74728 5.27270 5.40040 5.50383 5.59954 5.66935 5.68864 5.83500 5.84581 5.90146 5.94962 5.97255 6.01014 6.06191 6.09974 6.19977 6.26494 6.50358 6.57993 6.71863 6.85463 6.88556 7.05186 7.24286 7.29601 7.45927 7.57642 7.68242 7.84255 7.92207 8.24218 8.61165 8.67945 8.69224 8.77198 10.00051 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.007251 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.511707 B = 3860.418561 C = 5780.210409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.137 3.863 4 C -0.317 4.317 5 C -0.034 4.034 6 C -0.215 4.215 7 C 0.071 3.929 8 C -0.155 4.155 9 C 0.114 3.886 10 C -0.097 4.097 11 N -0.510 5.510 12 C 0.116 3.884 13 C -0.095 4.095 14 C -0.191 4.191 15 C 0.159 3.841 16 C -0.445 4.445 17 H 0.085 0.915 18 C 0.077 3.923 19 N -0.776 5.776 20 Si 0.905 3.095 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.258 1.258 24 C -0.193 4.193 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.123 0.877 38 H 0.285 0.715 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 4.906 -1.302 5.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.093 3.907 4 C -0.337 4.337 5 C -0.053 4.053 6 C -0.217 4.217 7 C 0.064 3.936 8 C -0.175 4.175 9 C -0.022 4.022 10 C -0.155 4.155 11 N -0.222 5.222 12 C -0.021 4.021 13 C -0.153 4.153 14 C -0.211 4.211 15 C 0.156 3.844 16 C -0.473 4.473 17 H 0.103 0.897 18 C -0.143 4.143 19 N -0.399 5.399 20 Si 0.728 3.272 21 H -0.192 1.192 22 H -0.198 1.198 23 H -0.182 1.182 24 C -0.213 4.213 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.156 0.844 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.141 0.859 38 H 0.096 0.904 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.063 5.316 -1.138 5.815 hybrid contribution -0.007 -0.954 -0.062 0.957 sum -2.070 4.362 -1.201 4.975 Atomic orbital electron populations 1.22774 0.80640 1.01972 1.00576 1.86005 1.19623 1.29031 1.89638 1.19016 0.92455 0.82528 0.96678 1.20364 0.97450 0.92402 1.23472 1.20321 0.93110 0.95383 0.96439 1.18448 0.92174 0.90767 1.20304 1.19114 0.91566 0.92396 0.90540 1.22189 0.97920 0.96820 1.00548 1.20998 0.96387 0.90120 0.94703 1.20620 0.95879 1.02256 0.96706 1.67149 1.14808 1.34885 1.05339 1.20897 0.92593 0.93881 0.94737 1.20597 1.01600 0.96525 0.96580 1.22020 1.03230 0.94343 1.01494 1.17180 0.92736 0.88804 0.85653 1.19583 0.90942 1.03348 1.33436 0.89714 1.25987 1.01462 0.94180 0.92694 1.69794 1.38704 1.10947 1.20475 0.86331 0.81703 0.78683 0.80448 1.19195 1.19796 1.18193 1.20531 0.89361 0.99056 1.12388 0.89828 0.93588 0.93640 0.88392 0.88803 0.84433 0.91245 0.90902 0.91276 0.91286 0.91196 0.91297 0.85896 0.90409 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.80 101.05 0.99 1.56 16 2 O -0.33 -7.06 10.48 -19.28 -0.20 -7.26 16 3 C 0.14 3.24 6.67 -39.23 -0.26 2.98 16 4 C -0.32 -6.88 9.02 -39.23 -0.35 -7.24 16 5 C -0.03 -0.74 9.52 -39.34 -0.37 -1.12 16 6 C -0.22 -5.05 5.57 -104.24 -0.58 -5.63 16 7 C 0.07 1.54 4.92 -104.59 -0.51 1.03 16 8 C -0.15 -3.22 7.75 -39.02 -0.30 -3.53 16 9 C 0.11 2.16 6.78 -82.66 -0.56 1.60 16 10 C -0.10 -1.46 10.16 36.01 0.37 -1.09 16 11 N -0.51 -9.73 10.17 -5.85 -0.06 -9.79 16 12 C 0.12 2.09 6.77 -82.66 -0.56 1.53 16 13 C -0.10 -1.29 10.16 36.01 0.37 -0.92 16 14 C -0.19 -3.66 9.28 -39.02 -0.36 -4.02 16 15 C 0.16 4.06 5.56 -106.59 -0.59 3.46 16 16 C -0.44 -11.11 7.19 -37.87 -0.27 -11.38 16 17 H 0.08 2.11 6.64 -52.49 -0.35 1.76 16 18 C 0.08 1.84 5.16 -17.31 -0.09 1.75 16 19 N -0.78 -19.13 11.00 55.56 0.61 -18.52 16 20 Si 0.90 18.01 29.59 -169.99 -5.03 12.98 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.19 -4.97 8.59 -38.77 -0.33 -5.30 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.68 7.64 -51.93 -0.40 0.29 16 27 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 28 H 0.10 1.86 6.25 -52.49 -0.33 1.53 16 29 H 0.09 1.82 8.05 -52.48 -0.42 1.39 16 30 H 0.14 2.97 7.40 -52.48 -0.39 2.58 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.81 8.07 -51.93 -0.42 0.40 16 37 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.28 6.39 8.29 -40.82 -0.34 6.06 16 39 H 0.13 3.42 6.25 -52.49 -0.33 3.10 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -27.94 328.56 -8.28 -36.22 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.12 Total: 7.74 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -3.43 Total: -26.32 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: 0.55 Total: -28.31 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.20 Total: -7.26 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.94 -8.28 -36.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241992911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.985 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds