Wall clock time and date at job start Tue Mar 31 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37955 * 119.55715 * 2 1 4 4 C 1.39798 * 119.01584 * 179.97438 * 3 2 1 5 5 C 1.48305 * 120.90415 * 179.97438 * 4 3 2 6 6 C 1.39406 * 120.06875 * 359.73031 * 5 4 3 7 7 C 1.37877 * 119.93493 * 179.78516 * 6 5 4 8 8 C 1.38862 * 120.06516 * 0.48827 * 7 6 5 9 9 O 1.35840 * 119.93311 * 179.71885 * 8 7 6 10 10 C 1.42900 * 117.00435 * 0.02562 * 9 8 7 11 11 C 1.50692 * 109.47528 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00284 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00211 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99761 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00118 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47203 * 89.99478 * 15 13 11 17 17 H 1.48496 * 109.46860 * 209.99863 * 15 13 11 18 18 H 1.48505 * 109.47138 * 329.99659 * 15 13 11 19 19 C 1.38858 * 120.13171 * 359.74055 * 8 7 6 20 20 C 1.37880 * 120.06473 * 0.02727 * 19 8 7 21 21 C 1.39803 * 118.18852 * 0.02562 * 4 3 2 22 22 C 1.37951 * 119.01799 * 0.02562 * 21 4 3 23 23 C 1.50699 * 119.56186 * 179.97438 * 22 21 4 24 24 N 1.31937 * 119.55888 * 179.72488 * 2 1 3 25 25 H 1.09001 * 109.46953 * 89.99874 * 1 2 3 26 26 H 1.09000 * 109.47318 * 209.99471 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.00102 * 1 2 3 28 28 H 1.07997 * 120.48551 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.03034 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.96900 * 180.20755 * 7 6 5 31 31 H 1.09006 * 109.46886 * 299.99946 * 10 9 8 32 32 H 1.09000 * 109.47246 * 59.99459 * 10 9 8 33 33 H 0.96993 * 119.99993 * 180.02562 * 14 13 11 34 34 H 1.07995 * 119.96433 * 179.97438 * 19 8 7 35 35 H 1.08001 * 120.02677 * 180.02562 * 20 19 8 36 36 H 1.08004 * 120.49518 * 179.97438 * 21 4 3 37 37 H 1.09003 * 109.47361 * 89.99368 * 23 22 21 38 38 H 1.08997 * 109.47478 * 210.00067 * 23 22 21 39 39 H 1.08999 * 109.46578 * 329.99970 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1876 1.2000 0.0000 4 6 3.5855 1.1868 0.0005 5 6 4.3592 2.4521 0.0000 6 6 3.6943 3.6773 -0.0068 7 6 4.4163 4.8519 -0.0028 8 6 5.8045 4.8153 -0.0023 9 8 6.5131 5.9742 -0.0041 10 6 5.7654 7.1919 -0.0059 11 6 6.7132 8.3634 -0.0085 12 1 7.7801 8.1950 -0.0082 13 6 6.2186 9.6505 -0.0100 14 7 4.9196 9.8557 -0.0098 15 14 7.3935 11.1027 -0.0124 16 1 7.7045 11.4856 -1.4130 17 1 6.7625 12.2510 0.6863 18 1 8.6478 10.7258 0.6878 19 6 6.4696 3.5963 -0.0004 20 6 5.7529 2.4184 0.0005 21 6 4.2342 -0.0516 0.0005 22 6 3.4761 -1.2041 -0.0006 23 6 4.1627 -2.5456 -0.0012 24 7 2.1579 -1.1476 0.0055 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.6483 2.1357 -0.0004 29 1 2.6147 3.7064 -0.0120 30 1 3.9018 5.8015 -0.0046 31 1 5.1374 7.2313 -0.8960 32 1 5.1374 7.2341 0.8840 33 1 4.5716 10.7610 -0.0112 34 1 7.5492 3.5710 -0.0004 35 1 6.2708 1.4707 0.0024 36 1 5.3129 -0.1053 0.0005 37 1 4.3279 -2.8698 1.0263 38 1 3.5363 -3.2742 -0.5158 39 1 5.1207 -2.4632 -0.5146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241993797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:10 Heat of formation + Delta-G solvation = 1.072690 kcal Electronic energy + Delta-G solvation = -20363.103791 eV Core-core repulsion = 17235.073354 eV Total energy + Delta-G solvation = -3128.030437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.52803 -39.34518 -36.98412 -33.87268 -33.39307 -32.81292 -30.90192 -29.21437 -28.95255 -27.45678 -26.87193 -23.74035 -23.07070 -22.21063 -21.24330 -20.26464 -17.77768 -16.79296 -16.38733 -16.19981 -15.66313 -15.00502 -14.89517 -14.71561 -14.46067 -14.20544 -13.72067 -13.60275 -13.41988 -12.94496 -12.79658 -12.63648 -12.62867 -12.27172 -12.04495 -11.91157 -11.68169 -11.44865 -11.13374 -11.03496 -10.57238 -10.55288 -10.22164 -9.59139 -9.52555 -9.36414 -8.85039 -8.79155 -8.63129 -7.44345 -6.31677 -4.35851 0.75894 1.06501 1.62992 2.13176 3.19979 3.25380 3.29924 3.65825 4.05394 4.09350 4.19139 4.40009 4.50686 4.55104 4.97357 5.00395 5.05785 5.09936 5.13740 5.29461 5.34742 5.38398 5.44821 5.45683 5.54330 5.60831 5.70028 5.81757 5.91912 5.93302 6.04599 6.20093 6.27512 6.52309 6.61865 6.71588 6.78953 6.86714 7.04265 7.09334 7.60544 7.86660 7.97620 8.34006 8.75709 9.29725 10.79547 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035812 B = 0.002842 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.664859 B = 9848.357971 C =10604.271061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.134 3.866 3 C -0.184 4.184 4 C 0.036 3.964 5 C -0.130 4.130 6 C -0.054 4.054 7 C -0.214 4.214 8 C 0.170 3.830 9 O -0.312 6.312 10 C 0.191 3.809 11 C -0.527 4.527 12 H 0.071 0.929 13 C 0.061 3.939 14 N -0.894 5.894 15 Si 0.914 3.086 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.270 1.270 19 C -0.172 4.172 20 C -0.059 4.059 21 C -0.184 4.184 22 C 0.133 3.867 23 C -0.102 4.102 24 N -0.500 5.500 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.138 0.862 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.268 0.732 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.008 -19.631 0.003 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.003 4.003 3 C -0.203 4.203 4 C 0.029 3.971 5 C -0.131 4.131 6 C -0.072 4.072 7 C -0.233 4.233 8 C 0.121 3.879 9 O -0.224 6.224 10 C 0.119 3.881 11 C -0.564 4.564 12 H 0.089 0.911 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.741 3.259 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.190 4.190 20 C -0.077 4.077 21 C -0.204 4.204 22 C -0.004 4.004 23 C -0.159 4.159 24 N -0.211 5.211 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.153 0.847 29 H 0.141 0.859 30 H 0.156 0.844 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.409 -20.193 0.015 20.905 hybrid contribution 0.713 1.857 -0.015 1.989 sum -4.695 -18.336 0.000 18.928 Atomic orbital electron populations 1.20703 0.88942 1.03347 1.03004 1.21111 0.96778 0.88045 0.94318 1.21984 0.93976 0.99360 1.05007 1.19141 0.92770 0.92629 0.92579 1.18374 0.92934 0.91284 1.10464 1.20964 0.99405 0.91007 0.95812 1.21438 0.93611 0.99686 1.08584 1.19468 0.90430 0.87869 0.90143 1.86130 1.37765 1.13445 1.85084 1.20718 0.92770 0.77602 0.97051 1.20964 0.93902 0.89062 1.52511 0.91072 1.24943 0.95677 0.98991 0.94561 1.69939 1.11648 1.22247 1.49356 0.86227 0.80485 0.80771 0.78438 1.20229 1.20853 1.19455 1.20377 1.00394 0.89711 1.08539 1.20883 0.92609 0.97427 0.96778 1.21949 1.01183 0.91995 1.05259 1.21105 0.89333 0.95497 0.94435 1.20692 0.99709 0.92569 1.02957 1.67282 1.09527 1.29412 1.14922 0.90489 0.90617 0.90696 0.84735 0.85939 0.84391 0.95874 0.95859 0.92240 0.85159 0.85683 0.84792 0.90532 0.90630 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.17 36.01 0.37 -0.53 16 2 C 0.13 1.63 6.78 -82.65 -0.56 1.07 16 3 C -0.18 -2.28 9.13 -39.10 -0.36 -2.64 16 4 C 0.04 0.49 5.91 -104.59 -0.62 -0.13 16 5 C -0.13 -1.90 5.88 -104.88 -0.62 -2.52 16 6 C -0.05 -0.82 9.44 -39.28 -0.37 -1.20 16 7 C -0.21 -3.92 9.02 -39.48 -0.36 -4.27 16 8 C 0.17 3.35 6.69 -39.12 -0.26 3.09 16 9 O -0.31 -7.35 10.11 -19.24 -0.19 -7.55 16 10 C 0.19 4.95 4.49 36.00 0.16 5.11 16 11 C -0.53 -14.76 9.43 -34.44 -0.32 -15.09 16 12 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 15 Si 0.91 20.94 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 C -0.17 -2.82 9.97 -39.48 -0.39 -3.22 16 20 C -0.06 -0.83 9.44 -39.27 -0.37 -1.20 16 21 C -0.18 -2.20 9.13 -39.10 -0.36 -2.56 16 22 C 0.13 1.57 6.78 -82.65 -0.56 1.01 16 23 C -0.10 -0.84 10.17 36.01 0.37 -0.48 16 24 N -0.50 -6.51 10.17 -5.83 -0.06 -6.57 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 28 H 0.13 1.45 6.34 -52.49 -0.33 1.11 16 29 H 0.12 1.58 6.29 -52.49 -0.33 1.25 16 30 H 0.14 2.64 6.28 -52.49 -0.33 2.31 16 31 H 0.02 0.62 7.65 -51.93 -0.40 0.22 16 32 H 0.02 0.63 7.66 -51.93 -0.40 0.23 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.13 1.38 6.29 -52.49 -0.33 1.05 16 36 H 0.13 1.31 6.34 -52.48 -0.33 0.98 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -30.55 332.04 -8.83 -39.38 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.95 Total: 0.49 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -4.35 Total: -21.97 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.68 Total: -31.27 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.19 Total: -7.55 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.55 -8.83 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241993797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.458 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds