Wall clock time and date at job start Tue Mar 31 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37955 * 119.55715 * 2 1 4 4 C 1.39798 * 119.01584 * 179.97438 * 3 2 1 5 5 C 1.48305 * 120.90415 * 179.97438 * 4 3 2 6 6 C 1.39406 * 120.06875 * 359.73031 * 5 4 3 7 7 C 1.37877 * 119.93493 * 179.78516 * 6 5 4 8 8 C 1.38862 * 120.06516 * 0.48827 * 7 6 5 9 9 O 1.35840 * 119.93311 * 179.71885 * 8 7 6 10 10 C 1.42900 * 117.00435 * 0.02562 * 9 8 7 11 11 C 1.50692 * 109.47528 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00284 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00211 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99761 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00118 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47203 * 89.99478 * 15 13 11 17 17 H 1.48496 * 109.46860 * 209.99863 * 15 13 11 18 18 H 1.48505 * 109.47138 * 329.99659 * 15 13 11 19 19 C 1.38858 * 120.13171 * 359.74055 * 8 7 6 20 20 C 1.37880 * 120.06473 * 0.02727 * 19 8 7 21 21 C 1.39803 * 118.18852 * 0.02562 * 4 3 2 22 22 C 1.37951 * 119.01799 * 0.02562 * 21 4 3 23 23 C 1.50699 * 119.56186 * 179.97438 * 22 21 4 24 24 N 1.31937 * 119.55888 * 179.72488 * 2 1 3 25 25 H 1.09001 * 109.46953 * 89.99874 * 1 2 3 26 26 H 1.09000 * 109.47318 * 209.99471 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.00102 * 1 2 3 28 28 H 1.07997 * 120.48551 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.03034 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.96900 * 180.20755 * 7 6 5 31 31 H 1.09006 * 109.46886 * 299.99946 * 10 9 8 32 32 H 1.09000 * 109.47246 * 59.99459 * 10 9 8 33 33 H 0.96993 * 119.99993 * 180.02562 * 14 13 11 34 34 H 1.07995 * 119.96433 * 179.97438 * 19 8 7 35 35 H 1.08001 * 120.02677 * 180.02562 * 20 19 8 36 36 H 1.08004 * 120.49518 * 179.97438 * 21 4 3 37 37 H 1.09003 * 109.47361 * 89.99368 * 23 22 21 38 38 H 1.08997 * 109.47478 * 210.00067 * 23 22 21 39 39 H 1.08999 * 109.46578 * 329.99970 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1876 1.2000 0.0000 4 6 3.5855 1.1868 0.0005 5 6 4.3592 2.4521 0.0000 6 6 3.6943 3.6773 -0.0068 7 6 4.4163 4.8519 -0.0028 8 6 5.8045 4.8153 -0.0023 9 8 6.5131 5.9742 -0.0041 10 6 5.7654 7.1919 -0.0059 11 6 6.7132 8.3634 -0.0085 12 1 7.7801 8.1950 -0.0082 13 6 6.2186 9.6505 -0.0100 14 7 4.9196 9.8557 -0.0098 15 14 7.3935 11.1027 -0.0124 16 1 7.7045 11.4856 -1.4130 17 1 6.7625 12.2510 0.6863 18 1 8.6478 10.7258 0.6878 19 6 6.4696 3.5963 -0.0004 20 6 5.7529 2.4184 0.0005 21 6 4.2342 -0.0516 0.0005 22 6 3.4761 -1.2041 -0.0006 23 6 4.1627 -2.5456 -0.0012 24 7 2.1579 -1.1476 0.0055 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5138 28 1 1.6483 2.1357 -0.0004 29 1 2.6147 3.7064 -0.0120 30 1 3.9018 5.8015 -0.0046 31 1 5.1374 7.2313 -0.8960 32 1 5.1374 7.2341 0.8840 33 1 4.5716 10.7610 -0.0112 34 1 7.5492 3.5710 -0.0004 35 1 6.2708 1.4707 0.0024 36 1 5.3129 -0.1053 0.0005 37 1 4.3279 -2.8698 1.0263 38 1 3.5363 -3.2742 -0.5158 39 1 5.1207 -2.4632 -0.5146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241993797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:09 Heat of formation + Delta-G solvation = -15.238371 kcal Electronic energy + Delta-G solvation = -20363.811091 eV Core-core repulsion = 17235.073354 eV Total energy + Delta-G solvation = -3128.737737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54285 -40.72400 -38.45866 -35.16575 -34.67804 -34.24374 -32.19580 -30.48474 -29.93234 -29.18340 -27.73022 -25.50214 -24.27433 -23.47445 -22.32251 -21.46788 -19.33401 -18.58683 -17.59421 -17.37892 -16.75860 -16.69191 -16.54023 -16.02574 -15.70862 -15.23187 -14.89126 -14.76268 -14.45693 -14.05106 -13.93603 -13.88622 -13.67664 -13.36555 -13.07632 -13.02546 -12.90408 -12.75129 -12.71721 -12.61197 -12.24420 -12.14666 -11.76971 -11.35473 -10.90913 -10.64665 -10.44644 -10.05694 -9.70649 -8.83568 -8.41948 -6.56366 -0.35316 0.17482 0.34001 0.93329 1.38570 1.41102 1.53137 2.24740 2.60735 2.67558 2.92992 3.01684 3.31623 3.44055 3.62858 3.84549 3.97420 4.12918 4.15775 4.24463 4.39290 4.48641 4.58607 4.64612 4.64819 4.75094 4.77512 4.81013 4.84591 4.93152 5.01579 5.06963 5.13254 5.17576 5.26097 5.34977 5.38010 5.50406 5.60734 5.77300 5.80813 5.82761 6.46514 6.73664 7.07871 7.15688 8.70266 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035812 B = 0.002842 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.664859 B = 9848.357971 C =10604.271061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.124 3.876 3 C -0.191 4.191 4 C 0.015 3.985 5 C -0.115 4.115 6 C -0.056 4.056 7 C -0.227 4.227 8 C 0.123 3.877 9 O -0.334 6.334 10 C 0.211 3.789 11 C -0.559 4.559 12 H 0.067 0.933 13 C 0.012 3.988 14 N -0.925 5.925 15 Si 0.988 3.012 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.263 1.263 19 C -0.167 4.167 20 C -0.051 4.051 21 C -0.183 4.183 22 C 0.123 3.877 23 C -0.100 4.100 24 N -0.517 5.517 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.116 0.884 31 H 0.003 0.997 32 H 0.003 0.997 33 H 0.274 0.726 34 H 0.145 0.855 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 -21.469 -0.013 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.013 4.013 3 C -0.210 4.210 4 C 0.007 3.993 5 C -0.115 4.115 6 C -0.075 4.075 7 C -0.246 4.246 8 C 0.076 3.924 9 O -0.247 6.247 10 C 0.138 3.862 11 C -0.596 4.596 12 H 0.086 0.914 13 C -0.188 4.188 14 N -0.563 5.563 15 Si 0.810 3.190 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.187 1.187 19 C -0.185 4.185 20 C -0.069 4.069 21 C -0.203 4.203 22 C -0.014 4.014 23 C -0.157 4.157 24 N -0.229 5.229 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.134 0.866 31 H 0.021 0.979 32 H 0.021 0.979 33 H 0.083 0.917 34 H 0.163 0.837 35 H 0.183 0.817 36 H 0.175 0.825 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.968 -22.068 -0.002 22.620 hybrid contribution 0.437 2.146 -0.009 2.190 sum -4.530 -19.922 -0.011 20.430 Atomic orbital electron populations 1.20781 0.86939 1.04212 1.03903 1.21594 0.98283 0.87726 0.93723 1.22197 0.93948 1.00161 1.04738 1.19179 0.93226 0.92424 0.94456 1.18638 0.93458 0.91562 1.07848 1.21170 1.00549 0.90365 0.95367 1.21359 0.93408 1.00005 1.09797 1.19882 0.91248 0.87588 0.93715 1.86041 1.38010 1.13785 1.86877 1.20215 0.92100 0.78880 0.95052 1.21325 0.94081 0.90496 1.53730 0.91439 1.25964 0.97555 1.01852 0.93416 1.70046 1.13520 1.23330 1.49437 0.85113 0.78174 0.76761 0.78984 1.19132 1.19752 1.18735 1.20627 1.01322 0.89031 1.07564 1.21282 0.92495 0.98079 0.95006 1.22222 1.02451 0.91356 1.04242 1.21689 0.89171 0.96990 0.93525 1.20788 1.00299 0.90656 1.03979 1.67381 1.10393 1.29914 1.15217 0.89472 0.90370 0.89241 0.83654 0.83696 0.86585 0.97910 0.97897 0.91675 0.83725 0.81691 0.82455 0.89399 0.90601 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 10.17 71.24 0.72 -0.85 16 2 C 0.12 2.75 6.78 42.48 0.29 3.04 16 3 C -0.19 -4.39 9.13 22.58 0.21 -4.18 16 4 C 0.01 0.36 5.91 -19.84 -0.12 0.24 16 5 C -0.11 -3.16 5.88 -20.03 -0.12 -3.28 16 6 C -0.06 -1.73 9.44 22.47 0.21 -1.52 16 7 C -0.23 -8.73 9.02 22.33 0.20 -8.52 16 8 C 0.12 5.04 6.69 22.57 0.15 5.19 16 9 O -0.33 -16.64 10.11 -91.75 -0.93 -17.57 16 10 C 0.21 11.67 4.49 71.23 0.32 11.99 16 11 C -0.56 -32.59 9.43 25.60 0.24 -32.34 16 12 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 13 C 0.01 0.66 5.46 84.66 0.46 1.12 16 14 N -0.93 -54.04 13.29 21.45 0.28 -53.75 16 15 Si 0.99 43.12 29.54 68.60 2.03 45.15 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 19 C -0.17 -5.40 9.97 22.33 0.22 -5.17 16 20 C -0.05 -1.32 9.44 22.47 0.21 -1.11 16 21 C -0.18 -3.81 9.13 22.58 0.21 -3.60 16 22 C 0.12 2.57 6.78 42.47 0.29 2.86 16 23 C -0.10 -1.34 10.17 71.24 0.72 -0.62 16 24 N -0.52 -12.39 10.17 -172.36 -1.75 -14.14 16 25 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 1.11 8.07 -2.39 -0.02 1.09 16 28 H 0.15 2.88 6.34 -2.91 -0.02 2.86 16 29 H 0.15 3.65 6.29 -2.91 -0.02 3.63 16 30 H 0.12 4.88 6.28 -2.91 -0.02 4.86 16 31 H 0.00 0.18 7.65 -2.38 -0.02 0.16 16 32 H 0.00 0.19 7.66 -2.39 -0.02 0.17 16 33 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 35 H 0.17 2.93 6.29 -2.91 -0.02 2.92 16 36 H 0.16 2.39 6.34 -2.91 -0.02 2.37 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 0.88 8.07 -2.39 -0.02 0.86 16 Total: -1.00 -68.26 332.04 4.91 -63.34 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.06 Total: 13.71 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 4.22 Total: -36.75 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -1.47 Total: -67.89 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.93 Total: -17.57 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -68.26 4.91 -63.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241993797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.106 kcal (2) G-P(sol) polarization free energy of solvation -68.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds