Wall clock time and date at job start Tue Mar 31 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35600 * 116.99683 * 2 1 4 4 N 1.32383 * 119.53190 * 0.02562 * 3 2 1 5 5 C 1.31690 * 121.80015 * 179.97438 * 4 3 2 6 6 C 1.39553 * 120.62488 * 0.02562 * 5 4 3 7 7 C 1.47912 * 120.49659 * 179.97438 * 6 5 4 8 8 C 1.40004 * 119.88040 * 179.97438 * 7 6 5 9 9 C 1.36207 * 120.11525 * 180.02562 * 8 7 6 10 10 C 1.40962 * 119.88203 * 0.02562 * 9 8 7 11 11 C 1.41002 * 120.11522 * 179.72456 * 10 9 8 12 12 H 1.07997 * 120.00512 * 153.62532 * 11 10 9 13 13 C 1.39986 * 120.00031 * 333.62385 * 11 10 9 14 14 N 1.30821 * 119.99923 * 343.83181 * 13 11 10 15 15 Si 1.86797 * 119.99975 * 163.83155 * 13 11 10 16 16 H 1.48501 * 109.47271 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47234 * 120.00523 * 15 13 11 18 18 H 1.48508 * 109.46827 * 240.00139 * 15 13 11 19 19 C 1.40927 * 119.77286 * 359.97438 * 10 9 8 20 20 C 1.50698 * 120.06234 * 179.97438 * 19 10 9 21 21 C 1.36238 * 119.88001 * 0.02562 * 19 10 9 22 22 C 1.40167 * 119.00015 * 0.27055 * 6 5 4 23 23 C 1.38064 * 118.35901 * 359.45917 * 22 6 5 24 24 C 1.50694 * 120.36312 * 180.25818 * 23 22 6 25 25 H 1.08994 * 109.46746 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46903 * 299.99769 * 1 2 3 27 27 H 1.08995 * 109.47195 * 59.99263 * 1 2 3 28 28 H 1.08000 * 119.69107 * 180.02562 * 5 4 3 29 29 H 1.07996 * 119.94663 * 0.02562 * 8 7 6 30 30 H 1.08001 * 120.06083 * 179.97438 * 9 8 7 31 31 H 0.96993 * 119.99715 * 179.97438 * 14 13 11 32 32 H 1.09005 * 109.46774 * 90.00055 * 20 19 10 33 33 H 1.09002 * 109.47410 * 209.99963 * 20 19 10 34 34 H 1.08998 * 109.46980 * 330.00403 * 20 19 10 35 35 H 1.08005 * 119.94495 * 179.97438 * 21 19 10 36 36 H 1.08003 * 120.81590 * 179.73136 * 22 6 5 37 37 H 1.09002 * 109.47838 * 270.28263 * 24 23 22 38 38 H 1.08998 * 109.47673 * 30.29092 * 24 23 22 39 39 H 1.09004 * 109.46883 * 150.28859 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 7 1.3145 2.3125 0.0005 5 6 1.8654 3.5087 0.0010 6 6 3.2536 3.6520 0.0005 7 6 3.8693 4.9969 0.0006 8 6 5.2634 5.1257 0.0006 9 6 5.8355 6.3618 0.0011 10 6 5.0213 7.5125 0.0022 11 6 5.6083 8.7945 0.0086 12 1 5.0727 9.6358 -0.4058 13 6 6.8853 8.9769 0.5523 14 7 7.4036 8.0590 1.3270 15 14 7.8492 10.5310 0.1716 16 1 7.0473 11.4045 -0.7224 17 1 8.1440 11.2528 1.4355 18 1 9.1231 10.1709 -0.5015 19 6 3.6185 7.3772 0.0022 20 6 2.7418 8.6030 0.0039 21 6 3.0564 6.1362 0.0016 22 6 4.0554 2.5024 -0.0063 23 6 3.4342 1.2695 -0.0009 24 6 4.2526 0.0041 -0.0020 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.2370 4.3870 0.0019 29 1 5.8863 4.2435 0.0002 30 1 6.9110 6.4602 0.0016 31 1 8.2885 8.1852 1.7034 32 1 2.5304 8.8998 -1.0234 33 1 1.8066 8.3801 0.5175 34 1 3.2545 9.4155 0.5187 35 1 1.9814 6.0313 0.0020 36 1 5.1327 2.5793 -0.0113 37 1 4.4495 -0.3005 -1.0299 38 1 5.1974 0.1819 0.5116 39 1 3.7028 -0.7846 0.5116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242432095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:51 Heat of formation + Delta-G solvation = -2.064883 kcal Electronic energy + Delta-G solvation = -21035.479577 eV Core-core repulsion = 17907.313085 eV Total energy + Delta-G solvation = -3128.166492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.26313 -38.24573 -37.20431 -34.07303 -33.40415 -32.34544 -30.76476 -28.96294 -27.44500 -26.99986 -25.91306 -24.84151 -22.62169 -22.17663 -20.31253 -19.32307 -18.09622 -17.35956 -16.55997 -15.77863 -15.63289 -15.03817 -14.30788 -14.12844 -13.64808 -13.57151 -13.51917 -12.94783 -12.81965 -12.73830 -12.45053 -12.40569 -12.04707 -11.73065 -11.69843 -11.43356 -11.30724 -11.21797 -11.18359 -10.90981 -10.63815 -10.49005 -9.83029 -9.49807 -9.49092 -9.18061 -9.04467 -8.24137 -7.53341 -7.06189 -6.89335 -4.47533 1.41811 1.64840 2.70898 2.96025 2.98260 3.01571 3.13126 3.40389 3.77117 4.17566 4.60380 4.71867 5.18511 5.24420 5.35650 5.40833 5.46168 5.52034 5.60790 5.72332 5.79136 5.83388 5.88994 6.08837 6.19555 6.31090 6.33977 6.49507 6.57617 6.59951 6.67314 6.86310 6.87716 6.98690 7.12111 7.26901 7.50036 7.56688 7.76609 7.89587 7.96959 8.11135 8.30443 8.43606 8.67496 8.79290 9.94914 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032494 B = 0.003640 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.502883 B = 7690.384666 C = 8456.639300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.314 6.314 3 C 0.269 3.731 4 N -0.527 5.527 5 C 0.098 3.902 6 C -0.050 4.050 7 C -0.194 4.194 8 C -0.079 4.079 9 C -0.167 4.167 10 C 0.122 3.878 11 C -0.441 4.441 12 H 0.085 0.915 13 C 0.073 3.927 14 N -0.778 5.778 15 Si 0.910 3.090 16 H -0.258 1.258 17 H -0.272 1.272 18 H -0.270 1.270 19 C -0.199 4.199 20 C -0.086 4.086 21 C -0.062 4.062 22 C -0.076 4.076 23 C -0.141 4.141 24 C -0.097 4.097 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.155 0.845 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.284 0.716 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.137 0.863 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 -8.060 -1.637 9.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.222 6.222 3 C 0.091 3.909 4 N -0.249 5.249 5 C -0.058 4.058 6 C -0.053 4.053 7 C -0.196 4.196 8 C -0.098 4.098 9 C -0.186 4.186 10 C 0.119 3.881 11 C -0.469 4.469 12 H 0.103 0.897 13 C -0.147 4.147 14 N -0.402 5.402 15 Si 0.734 3.266 16 H -0.182 1.182 17 H -0.198 1.198 18 H -0.195 1.195 19 C -0.200 4.200 20 C -0.143 4.143 21 C -0.080 4.080 22 C -0.101 4.101 23 C -0.144 4.144 24 C -0.155 4.155 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.172 0.828 29 H 0.109 0.891 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.155 0.845 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.422 -8.445 -1.478 10.144 hybrid contribution 1.143 0.871 -0.015 1.437 sum -4.279 -7.574 -1.493 8.827 Atomic orbital electron populations 1.22705 0.78344 1.01991 1.02103 1.86131 1.21912 1.25130 1.89018 1.19460 0.88726 0.84439 0.98318 1.67085 1.40828 0.98847 1.18120 1.22417 0.92516 0.92869 0.97984 1.19824 0.93418 0.94126 0.97897 1.17841 0.93004 0.89354 1.19384 1.20477 0.92994 0.96723 0.99603 1.20967 0.99868 0.91205 1.06536 1.17603 0.90232 0.93399 0.86821 1.19746 0.99391 0.95324 1.32476 0.89681 1.26041 0.97583 0.98416 0.92688 1.69823 1.16149 1.33708 1.20523 0.86214 0.79729 0.81231 0.79412 1.18157 1.19770 1.19503 1.19437 0.94100 0.93428 1.13040 1.20423 0.97192 0.96882 0.99811 1.20227 0.96847 0.91985 0.98982 1.21375 1.00336 0.90128 0.98267 1.19728 0.91046 0.96637 1.06944 1.20534 0.98669 0.94228 1.02027 0.89384 0.92799 0.92789 0.82801 0.89118 0.86380 0.90489 0.93887 0.94179 0.91990 0.88921 0.84530 0.91606 0.91717 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.37 101.05 1.05 1.57 16 2 O -0.31 -4.77 9.52 -18.50 -0.18 -4.95 16 3 C 0.27 4.63 7.47 -17.00 -0.13 4.50 16 4 N -0.53 -9.47 9.18 -12.95 -0.12 -9.59 16 5 C 0.10 1.80 10.60 -17.12 -0.18 1.61 16 6 C -0.05 -0.97 5.90 -104.72 -0.62 -1.59 16 7 C -0.19 -4.17 5.90 -104.63 -0.62 -4.79 16 8 C -0.08 -1.77 9.37 -39.65 -0.37 -2.15 16 9 C -0.17 -4.08 8.61 -39.28 -0.34 -4.42 16 10 C 0.12 3.04 5.56 -106.80 -0.59 2.45 16 11 C -0.44 -10.78 8.09 -37.88 -0.31 -11.08 16 12 H 0.09 1.99 6.88 -52.49 -0.36 1.63 16 13 C 0.07 1.69 5.15 -17.33 -0.09 1.60 16 14 N -0.78 -18.79 10.97 55.55 0.61 -18.18 16 15 Si 0.91 17.36 29.59 -169.99 -5.03 12.33 16 16 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 17 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 18 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 19 C -0.20 -4.53 5.90 -104.33 -0.62 -5.15 16 20 C -0.09 -1.69 9.39 36.00 0.34 -1.35 16 21 C -0.06 -1.33 9.00 -39.66 -0.36 -1.69 16 22 C -0.08 -1.33 9.20 -38.92 -0.36 -1.69 16 23 C -0.14 -2.31 5.91 -104.37 -0.62 -2.93 16 24 C -0.10 -1.25 9.80 36.00 0.35 -0.90 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.15 2.58 6.19 -52.49 -0.33 2.25 16 29 H 0.09 1.81 6.24 -52.49 -0.33 1.48 16 30 H 0.12 2.97 6.23 -52.49 -0.33 2.64 16 31 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.06 1.23 6.77 -51.93 -0.35 0.88 16 35 H 0.09 1.75 6.20 -52.48 -0.33 1.42 16 36 H 0.14 2.21 6.29 -52.48 -0.33 1.88 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.07 0.84 7.54 -51.93 -0.39 0.45 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -26.71 324.25 -8.10 -34.82 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -4.82 Total: 6.67 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -3.45 Total: -25.99 kcal Atomic # 7 Polarization: -28.26 SS G_CDS: 0.49 Total: -27.76 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.18 Total: -4.95 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.71 -8.10 -34.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242432095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.751 kcal (2) G-P(sol) polarization free energy of solvation -26.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds