Wall clock time and date at job start Tue Mar 31 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35661 * 117.00427 * 2 1 4 4 N 1.32308 * 119.54722 * 0.02562 * 3 2 1 5 5 C 1.31787 * 121.77108 * 179.72409 * 4 3 2 6 6 C 1.39220 * 120.66281 * 0.54055 * 5 4 3 7 7 C 1.48379 * 120.47891 * 179.72487 * 6 5 4 8 8 C 1.39347 * 120.11504 * 359.72597 * 7 6 5 9 9 C 1.38016 * 119.87244 * 179.97438 * 8 7 6 10 10 C 1.38325 * 120.12397 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.88110 * 179.70029 * 10 9 8 12 12 C 1.50701 * 109.46940 * 89.99681 * 11 10 9 13 13 H 1.07997 * 120.00233 * 0.02562 * 12 11 10 14 14 C 1.37886 * 120.00125 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99773 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00173 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47208 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47055 * 120.00228 * 16 14 12 19 19 H 1.48498 * 109.47275 * 240.00136 * 16 14 12 20 20 C 1.38324 * 120.24668 * 359.97438 * 10 9 8 21 21 C 1.38021 * 120.12006 * 0.02562 * 20 10 9 22 22 C 1.39877 * 119.04789 * 359.44946 * 6 5 4 23 23 C 1.38188 * 118.37899 * 0.27661 * 22 6 5 24 24 C 1.50703 * 120.37946 * 180.02562 * 23 22 6 25 25 H 1.08998 * 109.47491 * 300.00439 * 1 2 3 26 26 H 1.09005 * 109.46775 * 59.99547 * 1 2 3 27 27 H 1.08996 * 109.47685 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.67589 * 180.26528 * 5 4 3 29 29 H 1.08000 * 120.06612 * 359.97438 * 8 7 6 30 30 H 1.08006 * 119.93969 * 180.02562 * 9 8 7 31 31 H 1.08994 * 109.47527 * 209.99750 * 11 10 9 32 32 H 1.09006 * 109.47091 * 330.00429 * 11 10 9 33 33 H 0.96996 * 120.00019 * 179.97438 * 15 14 12 34 34 H 1.07991 * 119.94294 * 180.02562 * 20 10 9 35 35 H 1.07999 * 120.06352 * 180.02562 * 21 20 10 36 36 H 1.08004 * 120.81224 * 180.25234 * 22 6 5 37 37 H 1.09002 * 109.47062 * 90.00089 * 24 23 22 38 38 H 1.09004 * 109.47047 * 210.00095 * 24 23 22 39 39 H 1.09001 * 109.47395 * 330.00531 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 7 1.3156 2.3127 0.0005 5 6 1.8680 3.5092 0.0059 6 6 3.2529 3.6519 0.0001 7 6 3.8704 5.0011 0.0001 8 6 3.0654 6.1385 0.0002 9 6 3.6451 7.3910 0.0007 10 6 5.0225 7.5184 0.0006 11 6 5.6497 8.8887 -0.0057 12 6 5.8582 9.3521 1.4131 13 1 5.5662 8.7177 2.2368 14 6 6.4218 10.5862 1.6595 15 7 6.7770 11.3589 0.6563 16 14 6.6809 11.1603 3.4180 17 1 6.2015 10.1138 4.3561 18 1 8.1267 11.4077 3.6500 19 1 5.9212 12.4157 3.6459 20 6 5.8264 6.3928 0.0004 21 6 5.2574 5.1353 -0.0001 22 6 4.0538 2.5052 0.0000 23 6 3.4332 1.2705 0.0000 24 6 4.2525 0.0056 0.0006 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.2402 4.3879 0.0105 29 1 1.9899 6.0401 -0.0001 30 1 3.0222 8.2733 0.0012 31 1 6.6103 8.8463 -0.5189 32 1 4.9918 9.5870 -0.5230 33 1 7.1731 12.2272 0.8296 34 1 6.9012 6.4980 0.0008 35 1 5.8859 4.2570 0.0002 36 1 5.1311 2.5828 -0.0004 37 1 4.4496 -0.2991 1.0284 38 1 3.7032 -0.7833 -0.5134 39 1 5.1972 0.1844 -0.5128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242433576.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:14 Heat of formation + Delta-G solvation = 5.083633 kcal Electronic energy + Delta-G solvation = -20510.314874 eV Core-core repulsion = 17382.458365 eV Total energy + Delta-G solvation = -3127.856509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.84035 -38.92117 -37.70306 -33.90680 -33.86721 -32.39471 -30.50920 -30.00270 -27.84625 -27.31314 -26.44794 -23.77722 -23.32370 -21.90025 -21.39479 -20.04827 -18.47842 -17.13213 -16.50454 -16.26291 -16.19464 -15.09294 -14.65126 -14.58476 -14.02751 -13.97591 -13.89986 -13.59961 -13.38877 -12.99528 -12.62423 -12.60127 -12.51771 -12.25054 -12.02392 -11.69394 -11.37128 -11.29730 -11.10607 -10.79497 -10.57008 -10.32121 -9.94509 -9.68832 -9.54954 -9.45434 -8.72457 -8.47539 -8.40346 -7.40394 -6.08641 -4.12997 0.79734 1.11515 1.97095 2.24366 2.96284 3.26694 3.34598 3.39575 3.70911 4.20049 4.36006 4.53583 4.62465 4.77070 4.85017 4.99789 5.11411 5.12145 5.20503 5.25745 5.32854 5.38267 5.45046 5.47608 5.63817 5.81679 5.89805 5.90696 6.03325 6.13194 6.27041 6.34613 6.53031 6.61595 6.98425 7.06249 7.10206 7.12818 7.44152 7.61491 7.76760 7.77445 7.87007 8.26000 8.92598 9.51256 11.00999 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033932 B = 0.002939 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.970734 B = 9524.443258 C = 9699.884642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.308 6.308 3 C 0.302 3.698 4 N -0.532 5.532 5 C 0.131 3.869 6 C -0.099 4.099 7 C -0.081 4.081 8 C -0.108 4.108 9 C -0.122 4.122 10 C -0.023 4.023 11 C 0.044 3.956 12 C -0.512 4.512 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.123 4.123 21 C -0.108 4.108 22 C -0.048 4.048 23 C -0.149 4.149 24 C -0.100 4.100 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.162 0.838 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.143 0.857 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.494 -20.599 -2.567 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.124 3.876 4 N -0.254 5.254 5 C -0.025 4.025 6 C -0.101 4.101 7 C -0.081 4.081 8 C -0.126 4.126 9 C -0.140 4.140 10 C -0.023 4.023 11 C 0.008 3.992 12 C -0.550 4.550 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.141 4.141 21 C -0.126 4.126 22 C -0.073 4.073 23 C -0.152 4.152 24 C -0.157 4.157 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.179 0.821 29 H 0.133 0.867 30 H 0.140 0.860 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.161 0.839 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.239 -20.797 -2.610 22.906 hybrid contribution 0.764 0.725 0.996 1.450 sum -8.474 -20.071 -1.614 21.847 Atomic orbital electron populations 1.22815 0.77568 1.02623 1.02432 1.86190 1.22567 1.24676 1.88151 1.19629 0.88855 0.84672 0.94493 1.67236 1.40629 0.98716 1.18819 1.22509 0.92207 0.93400 0.94336 1.19696 0.93998 0.93544 1.02899 1.18281 0.93281 0.90405 1.06174 1.21058 0.98695 0.92116 1.00741 1.21043 0.95129 0.96585 1.01266 1.20824 0.93164 0.97843 0.90471 1.18414 0.96094 0.86863 0.97869 1.21079 1.40781 1.01766 0.91388 0.92373 1.25019 0.95428 0.96611 0.97286 1.69963 1.42104 1.10601 1.30567 0.86474 0.77873 0.78698 0.84657 1.19638 1.20913 1.20902 1.21040 1.00109 0.91594 1.01344 1.21054 0.93460 0.97332 1.00725 1.21431 1.00606 0.90029 0.95184 1.19817 0.91171 0.96901 1.07261 1.20574 0.98733 0.93901 1.02500 0.92405 0.92435 0.88867 0.82129 0.86699 0.86032 0.95183 0.95162 0.92837 0.86087 0.86823 0.83910 0.91182 0.91001 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.31 -3.59 9.52 -18.68 -0.18 -3.76 16 3 C 0.30 3.94 7.47 -17.08 -0.13 3.81 16 4 N -0.53 -7.24 9.19 -13.05 -0.12 -7.36 16 5 C 0.13 1.75 10.60 -17.21 -0.18 1.56 16 6 C -0.10 -1.37 5.89 -104.74 -0.62 -1.99 16 7 C -0.08 -1.25 5.88 -104.90 -0.62 -1.87 16 8 C -0.11 -1.72 9.44 -39.25 -0.37 -2.09 16 9 C -0.12 -2.28 9.68 -39.63 -0.38 -2.66 16 10 C -0.02 -0.48 5.07 -104.56 -0.53 -1.01 16 11 C 0.04 1.11 5.10 -29.04 -0.15 0.96 16 12 C -0.51 -14.06 9.09 -34.44 -0.31 -14.37 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 16 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.12 -2.29 9.68 -39.63 -0.38 -2.67 16 21 C -0.11 -1.71 9.44 -39.25 -0.37 -2.08 16 22 C -0.05 -0.59 9.20 -38.99 -0.36 -0.94 16 23 C -0.15 -1.78 5.91 -104.37 -0.62 -2.39 16 24 C -0.10 -0.90 9.81 36.01 0.35 -0.55 16 25 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 26 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.16 1.83 6.22 -52.49 -0.33 1.51 16 29 H 0.12 1.49 6.23 -52.49 -0.33 1.16 16 30 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 31 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 35 H 0.11 1.47 6.27 -52.49 -0.33 1.14 16 36 H 0.14 1.48 6.32 -52.48 -0.33 1.15 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.63 7.54 -51.93 -0.39 0.24 16 39 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -30.61 332.43 -8.33 -38.93 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.04 Total: -0.42 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -3.71 Total: -23.37 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.62 Total: -32.64 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.18 Total: -3.76 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.61 -8.33 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242433576.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.018 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds