Wall clock time and date at job start Tue Mar 31 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35652 * 117.00245 * 2 1 4 4 N 1.32309 * 119.55498 * 0.02562 * 3 2 1 5 5 C 1.31782 * 121.77718 * 179.97438 * 4 3 2 6 6 C 1.39216 * 120.66406 * 359.97438 * 5 4 3 7 7 C 1.48381 * 120.47686 * 180.02562 * 6 5 4 8 8 C 1.39367 * 120.12147 * 180.02562 * 7 6 5 9 9 C 1.37988 * 119.87670 * 179.97438 * 8 7 6 10 10 C 1.38349 * 120.12214 * 359.97438 * 9 8 7 11 11 C 1.38300 * 120.24329 * 359.75452 * 10 9 8 12 12 C 1.50707 * 119.93935 * 180.25311 * 11 10 9 13 13 C 1.50700 * 109.46816 * 270.25380 * 12 11 10 14 14 H 1.08004 * 120.00518 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00104 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99518 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00133 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47478 * 89.99858 * 17 15 13 19 19 H 1.48505 * 109.46808 * 209.99763 * 17 15 13 20 20 H 1.48501 * 109.47006 * 329.99228 * 17 15 13 21 21 C 1.38035 * 120.12445 * 0.50607 * 11 10 9 22 22 C 1.39879 * 119.04827 * 0.28884 * 6 5 4 23 23 C 1.38183 * 118.38006 * 359.44160 * 22 6 5 24 24 C 1.50703 * 120.38615 * 180.30139 * 23 22 6 25 25 H 1.08996 * 109.47373 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46803 * 299.99752 * 1 2 3 27 27 H 1.09001 * 109.47127 * 59.99194 * 1 2 3 28 28 H 1.08003 * 119.66697 * 180.02562 * 5 4 3 29 29 H 1.08000 * 120.06237 * 359.97438 * 8 7 6 30 30 H 1.08003 * 119.94117 * 180.02562 * 9 8 7 31 31 H 1.08001 * 119.87810 * 180.02562 * 10 9 8 32 32 H 1.09006 * 109.46877 * 30.24785 * 12 11 10 33 33 H 1.08995 * 109.47320 * 150.25317 * 12 11 10 34 34 H 0.97002 * 119.99720 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.06672 * 179.77437 * 21 11 10 36 36 H 1.08002 * 120.81179 * 179.70955 * 22 6 5 37 37 H 1.09001 * 109.47103 * 270.26721 * 24 23 22 38 38 H 1.09007 * 109.46671 * 30.26627 * 24 23 22 39 39 H 1.09000 * 109.46935 * 150.25974 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 7 1.3158 2.3127 0.0005 5 6 1.8681 3.5092 0.0010 6 6 3.2529 3.6519 0.0016 7 6 3.8705 5.0011 0.0028 8 6 5.2576 5.1353 0.0028 9 6 5.8265 6.3925 0.0033 10 6 5.0226 7.5184 0.0033 11 6 3.6455 7.3910 -0.0024 12 6 2.7762 8.6221 -0.0081 13 6 2.4856 9.0383 1.4108 14 1 2.8895 8.4683 2.2344 15 6 1.7031 10.1465 1.6577 16 7 1.2108 10.8404 0.6549 17 14 1.3423 10.6620 3.4165 18 1 2.3901 11.6065 3.8804 19 1 0.0156 11.3267 3.4751 20 1 1.3341 9.4626 4.2921 21 6 3.0656 6.1383 0.0025 22 6 4.0539 2.5051 -0.0046 23 6 3.4333 1.2705 0.0009 24 6 4.2525 0.0055 0.0014 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.2401 4.3879 0.0019 29 1 5.8862 4.2571 0.0024 30 1 6.9014 6.4978 0.0029 31 1 5.4720 8.5004 0.0033 32 1 3.2941 9.4301 -0.5249 33 1 1.8400 8.4035 -0.5216 34 1 0.6607 11.6202 0.8285 35 1 1.9901 6.0400 0.0017 36 1 5.1311 2.5827 -0.0090 37 1 4.4505 -0.2996 -1.0261 38 1 5.1968 0.1845 0.5157 39 1 3.7028 -0.7831 0.5152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242434041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:17 Heat of formation + Delta-G solvation = 5.436294 kcal Electronic energy + Delta-G solvation = -20753.150496 eV Core-core repulsion = 17625.309279 eV Total energy + Delta-G solvation = -3127.841217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78033 -38.89606 -37.64215 -33.87613 -33.67637 -32.51882 -31.15259 -29.07097 -27.77330 -27.11077 -26.75827 -23.68708 -23.17983 -22.68270 -20.90942 -19.76123 -18.44306 -17.05977 -16.47010 -16.20420 -16.12717 -15.13753 -14.61893 -14.50153 -14.29648 -13.97385 -13.91937 -13.43228 -13.31967 -12.96023 -12.58220 -12.54068 -12.36256 -12.21804 -11.89606 -11.66501 -11.34072 -11.25690 -11.03008 -10.85452 -10.52030 -10.41703 -9.89338 -9.61212 -9.52818 -9.46579 -8.87807 -8.45286 -8.00885 -7.53546 -6.07380 -4.11382 0.83170 1.17834 2.02921 2.24321 3.02416 3.28866 3.35379 3.39612 3.76460 4.29299 4.37435 4.55405 4.66292 4.81786 4.90320 5.05872 5.17853 5.20701 5.24470 5.27380 5.38324 5.45921 5.49716 5.52446 5.63223 5.86525 5.89197 5.94532 6.06726 6.08830 6.32161 6.41000 6.54241 6.66577 6.98771 7.07230 7.11294 7.18794 7.45460 7.62906 7.78035 7.85511 7.88502 8.27749 8.93909 9.52848 11.02531 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018846 B = 0.003794 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.377215 B = 7377.441787 C = 8373.638365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.309 6.309 3 C 0.305 3.695 4 N -0.532 5.532 5 C 0.141 3.859 6 C -0.108 4.108 7 C -0.050 4.050 8 C -0.138 4.138 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.030 4.030 12 C 0.047 3.953 13 C -0.513 4.513 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.111 4.111 22 C -0.044 4.044 23 C -0.153 4.153 24 C -0.098 4.098 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.166 0.834 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.121 0.879 36 H 0.142 0.858 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.815 -19.437 -2.600 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.127 3.873 4 N -0.253 5.253 5 C -0.015 4.015 6 C -0.110 4.110 7 C -0.051 4.051 8 C -0.156 4.156 9 C -0.139 4.139 10 C -0.136 4.136 11 C -0.030 4.030 12 C 0.010 3.990 13 C -0.551 4.551 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.129 4.129 22 C -0.069 4.069 23 C -0.156 4.156 24 C -0.156 4.156 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.183 0.817 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.139 0.861 36 H 0.160 0.840 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.874 -19.653 -2.640 20.204 hybrid contribution 0.334 0.685 1.000 1.258 sum 4.209 -18.968 -1.640 19.498 Atomic orbital electron populations 1.22830 0.77475 1.02604 1.02591 1.86181 1.22655 1.24682 1.88080 1.19672 0.88859 0.84757 0.94028 1.67282 1.40569 0.98690 1.18797 1.22657 0.92339 0.93531 0.93010 1.19711 0.94110 0.93484 1.03680 1.18452 0.93266 0.90590 1.02800 1.20867 0.93499 0.97085 1.04134 1.20962 0.99151 0.92545 1.01194 1.21201 0.93696 0.98287 1.00412 1.20636 0.94341 0.96350 0.91683 1.18380 0.93776 0.89010 0.97837 1.21051 1.31318 1.11342 0.91424 0.92437 1.25003 0.95686 0.96330 0.97228 1.69952 1.34372 1.18276 1.30616 0.86543 0.77669 0.78803 0.84753 1.20567 1.21129 1.19780 1.21117 0.99428 0.91311 1.01022 1.21394 1.00434 0.90028 0.95053 1.19796 0.91175 0.96842 1.07801 1.20556 0.98677 0.93955 1.02378 0.88879 0.92315 0.92336 0.81676 0.86972 0.86762 0.86254 0.95192 0.95220 0.92798 0.86113 0.84015 0.91280 0.91497 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.31 -3.83 9.52 -18.66 -0.18 -4.01 16 3 C 0.31 4.26 7.47 -17.07 -0.13 4.13 16 4 N -0.53 -8.00 9.19 -13.05 -0.12 -8.12 16 5 C 0.14 2.13 10.59 -17.21 -0.18 1.95 16 6 C -0.11 -1.60 5.89 -104.74 -0.62 -2.22 16 7 C -0.05 -0.83 5.88 -104.90 -0.62 -1.45 16 8 C -0.14 -2.08 9.44 -39.25 -0.37 -2.45 16 9 C -0.12 -1.90 10.03 -39.63 -0.40 -2.29 16 10 C -0.12 -2.21 9.69 -39.52 -0.38 -2.59 16 11 C -0.03 -0.63 5.06 -104.67 -0.53 -1.16 16 12 C 0.05 1.17 5.10 -29.03 -0.15 1.03 16 13 C -0.51 -14.14 9.09 -34.44 -0.31 -14.45 16 14 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.11 -2.10 9.09 -39.25 -0.36 -2.46 16 22 C -0.04 -0.56 9.20 -38.99 -0.36 -0.92 16 23 C -0.15 -1.91 5.91 -104.37 -0.62 -2.53 16 24 C -0.10 -0.91 9.80 36.01 0.35 -0.56 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.59 8.10 -51.92 -0.42 0.17 16 27 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 28 H 0.17 2.39 6.22 -52.48 -0.33 2.06 16 29 H 0.11 1.35 6.27 -52.49 -0.33 1.02 16 30 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 32 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.12 2.20 6.23 -52.49 -0.33 1.88 16 36 H 0.14 1.46 6.32 -52.49 -0.33 1.13 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.07 0.66 7.54 -51.93 -0.39 0.27 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -30.63 332.44 -8.32 -38.95 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.04 Total: 0.13 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -3.71 Total: -22.98 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.62 Total: -33.45 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.18 Total: -4.01 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.63 -8.32 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242434041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.389 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds