Wall clock time and date at job start Tue Mar 31 2020 06:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47150 * 2 1 4 4 N 1.31698 * 119.71982 * 268.96316 * 3 2 1 5 5 C 1.31924 * 121.87427 * 180.33737 * 4 3 2 6 6 C 1.38372 * 121.07676 * 359.65870 * 5 4 3 7 7 C 1.38341 * 119.30325 * 0.02562 * 6 5 4 8 8 C 1.39543 * 119.71791 * 88.67683 * 3 2 1 9 9 C 1.48034 * 120.55771 * 359.96709 * 8 3 2 10 10 C 1.40077 * 119.83537 * 56.61793 * 9 8 3 11 11 C 1.36109 * 120.39779 * 179.97438 * 10 9 8 12 12 C 1.40915 * 120.05814 * 359.97438 * 11 10 9 13 13 C 1.40834 * 120.16028 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00174 * 155.47267 * 13 12 11 15 15 C 1.40005 * 120.00233 * 335.48164 * 13 12 11 16 16 N 1.30835 * 119.99832 * 342.16621 * 15 13 12 17 17 Si 1.86807 * 120.00094 * 162.16687 * 15 13 12 18 18 H 1.48495 * 109.46995 * 59.99962 * 17 15 13 19 19 H 1.48494 * 109.47007 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46956 * 300.00096 * 17 15 13 21 21 C 1.41490 * 119.67722 * 0.02562 * 12 11 10 22 22 O 1.35674 * 120.19461 * 179.97438 * 21 12 11 23 23 C 1.42903 * 116.99867 * 179.97438 * 22 21 12 24 24 C 1.37991 * 119.61050 * 0.24287 * 21 12 11 25 25 H 1.09001 * 109.47103 * 175.40837 * 1 2 3 26 26 H 1.08999 * 109.46928 * 295.41200 * 1 2 3 27 27 H 1.09003 * 109.46875 * 55.41670 * 1 2 3 28 28 H 1.08996 * 109.47361 * 239.99724 * 2 1 3 29 29 H 1.09000 * 109.46648 * 119.99841 * 2 1 3 30 30 H 1.08003 * 119.46241 * 179.68225 * 5 4 3 31 31 H 1.07998 * 120.34567 * 180.02562 * 6 5 4 32 32 H 1.08011 * 120.84761 * 179.97438 * 7 6 5 33 33 H 1.08005 * 119.79870 * 359.97438 * 10 9 8 34 34 H 1.08006 * 119.96846 * 179.97438 * 11 10 9 35 35 H 0.96996 * 119.99369 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.47074 * 180.02562 * 23 22 21 37 37 H 1.08996 * 109.47527 * 59.99709 * 23 22 21 38 38 H 1.09004 * 109.46758 * 299.99348 * 23 22 21 39 39 H 1.08000 * 120.02953 * 179.74833 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2695 2.0294 -1.1436 5 6 2.7160 3.2698 -1.1930 6 6 2.9492 3.9917 -0.0358 7 6 2.7096 3.3997 1.1914 8 6 2.2365 2.0823 1.2116 9 6 1.9632 1.4004 2.4968 10 6 2.6042 0.1909 2.7941 11 6 2.3617 -0.4455 3.9726 12 6 1.4619 0.1111 4.9032 13 6 1.2098 -0.5453 6.1235 14 1 0.8652 0.0176 6.9784 15 6 1.4062 -1.9275 6.2285 16 7 1.4795 -2.6618 5.1481 17 14 1.5636 -2.7234 7.9112 18 1 0.3257 -2.4765 8.6932 19 1 1.7633 -4.1860 7.7502 20 1 2.7263 -2.1404 8.6277 21 6 0.8129 1.3327 4.6058 22 8 -0.0559 1.8778 5.4940 23 6 -0.6722 3.1129 5.1242 24 6 1.0644 1.9636 3.4046 25 1 -0.3633 -1.0244 -0.0823 26 1 -0.3633 0.4410 0.9282 27 1 -0.3633 0.5833 -0.8461 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.9022 3.7295 -2.1524 31 1 3.3144 5.0066 -0.0901 32 1 2.8835 3.9400 2.1103 33 1 3.2950 -0.2392 2.0839 34 1 2.8595 -1.3780 4.1945 35 1 1.6159 -3.6193 5.2209 36 1 -1.3412 3.4380 5.9210 37 1 -1.2415 2.9741 4.2052 38 1 0.0966 3.8691 4.9648 39 1 0.5697 2.8942 3.1689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242522987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:32 Heat of formation + Delta-G solvation = 4.611151 kcal Electronic energy + Delta-G solvation = -21820.575447 eV Core-core repulsion = 18692.698449 eV Total energy + Delta-G solvation = -3127.876998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.93302 -38.58709 -36.25425 -34.27504 -33.56542 -32.07777 -30.08724 -29.00764 -28.70942 -26.58901 -25.35182 -23.98979 -22.73818 -20.94104 -20.65156 -20.33216 -17.55821 -16.81220 -16.07339 -15.88619 -15.38916 -14.86133 -14.67107 -14.46301 -14.08977 -13.75702 -13.35504 -13.23464 -12.88266 -12.62066 -12.46906 -12.23248 -11.86299 -11.54968 -11.50276 -11.29016 -11.14711 -10.92029 -10.84501 -10.56162 -10.51533 -9.95657 -9.87940 -9.65652 -9.42172 -9.22075 -8.97979 -8.36935 -7.46868 -7.10338 -6.82535 -4.33177 1.45412 1.68332 2.64546 2.94290 3.02579 3.05228 3.13038 3.86324 4.18392 4.42917 4.52420 4.70053 5.17681 5.26132 5.39489 5.44519 5.54910 5.71931 5.76322 5.77838 5.83655 5.86622 5.91886 6.03586 6.15762 6.26244 6.32149 6.32308 6.45684 6.62629 6.69614 6.76441 6.79526 6.96321 7.15648 7.18377 7.26429 7.61486 7.64290 7.93327 8.08249 8.31529 8.42836 8.57647 8.70873 8.97050 10.04744 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.005140 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.070271 B = 5445.726124 C = 6123.573616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 C 0.127 3.873 4 N -0.486 5.486 5 C 0.069 3.931 6 C -0.179 4.179 7 C -0.086 4.086 8 C -0.034 4.034 9 C -0.170 4.170 10 C -0.095 4.095 11 C -0.153 4.153 12 C 0.108 3.892 13 C -0.434 4.434 14 H 0.085 0.915 15 C 0.073 3.927 16 N -0.783 5.783 17 Si 0.912 3.088 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.262 1.262 21 C 0.006 3.994 22 O -0.312 6.312 23 C 0.035 3.965 24 C -0.148 4.148 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.145 0.855 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.284 0.716 36 H 0.081 0.919 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 6.379 -4.869 8.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 C -0.011 4.011 4 N -0.194 5.194 5 C -0.087 4.087 6 C -0.199 4.199 7 C -0.112 4.112 8 C -0.036 4.036 9 C -0.172 4.172 10 C -0.113 4.113 11 C -0.172 4.172 12 C 0.105 3.895 13 C -0.462 4.462 14 H 0.103 0.897 15 C -0.146 4.146 16 N -0.408 5.408 17 Si 0.736 3.264 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.038 4.038 22 O -0.227 6.227 23 C -0.061 4.061 24 C -0.167 4.167 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.162 0.838 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.110 0.890 34 H 0.144 0.856 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.254 5.596 -5.543 7.881 hybrid contribution 0.179 0.504 1.157 1.274 sum 0.432 6.100 -4.386 7.526 Atomic orbital electron populations 1.21592 0.94586 1.01480 1.01783 1.20627 0.96522 0.90856 1.03729 1.21479 0.95398 0.96833 0.87410 1.67358 1.11996 1.10358 1.29712 1.22508 0.97766 0.90585 0.97874 1.21947 1.03274 1.00967 0.93674 1.21743 0.96813 0.94831 0.97797 1.19794 0.96052 0.93397 0.94339 1.17525 1.07224 0.98602 0.93852 1.20310 0.99753 0.94097 0.97161 1.20756 1.00439 1.01600 0.94434 1.17107 0.90013 0.88578 0.93836 1.19495 1.37035 0.92169 0.97494 0.89708 1.25985 0.92360 0.97661 0.98618 1.69808 1.33270 1.07543 1.30156 0.86297 0.80178 0.77857 0.82094 1.18843 1.20244 1.18688 1.19010 0.96975 0.97978 0.89860 1.85969 1.57213 1.36237 1.43264 1.22724 0.96685 0.86235 1.00454 1.20513 1.02032 0.99660 0.94493 0.92413 0.92152 0.93446 0.91269 0.88337 0.83763 0.85724 0.85428 0.89012 0.85607 0.90509 0.90002 0.94197 0.94309 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.89 37.16 0.37 -1.91 16 2 C -0.08 -1.39 5.79 -27.88 -0.16 -1.56 16 3 C 0.13 2.34 6.05 -82.17 -0.50 1.84 16 4 N -0.49 -8.53 10.26 -9.13 -0.09 -8.63 16 5 C 0.07 1.03 11.17 -17.46 -0.20 0.84 16 6 C -0.18 -2.54 10.10 -39.49 -0.40 -2.94 16 7 C -0.09 -1.43 9.80 -38.89 -0.38 -1.81 16 8 C -0.03 -0.64 5.39 -104.74 -0.56 -1.20 16 9 C -0.17 -3.58 4.94 -104.68 -0.52 -4.10 16 10 C -0.09 -2.09 7.58 -39.66 -0.30 -2.39 16 11 C -0.15 -3.73 8.62 -39.33 -0.34 -4.07 16 12 C 0.11 2.76 5.59 -106.66 -0.60 2.17 16 13 C -0.43 -11.16 8.70 -37.94 -0.33 -11.49 16 14 H 0.08 2.17 7.64 -52.48 -0.40 1.77 16 15 C 0.07 1.75 5.13 -17.31 -0.09 1.66 16 16 N -0.78 -19.17 10.94 55.55 0.61 -18.56 16 17 Si 0.91 18.04 29.60 -169.99 -5.03 13.01 16 18 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 19 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 21 C 0.01 0.14 6.71 -38.43 -0.26 -0.12 16 22 O -0.31 -7.00 9.77 -18.73 -0.18 -7.19 16 23 C 0.04 0.59 9.81 101.05 0.99 1.58 16 24 C -0.15 -3.19 8.61 -39.16 -0.34 -3.53 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.10 1.85 4.58 -51.93 -0.24 1.61 16 30 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.13 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.09 1.88 7.26 -52.48 -0.38 1.50 16 34 H 0.13 3.15 6.14 -52.48 -0.32 2.83 16 35 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 38 H 0.04 0.60 7.68 -51.93 -0.40 0.20 16 39 H 0.10 1.87 6.29 -52.49 -0.33 1.54 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -27.35 326.20 -8.37 -35.73 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.98 Total: 7.75 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -3.61 Total: -27.02 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.51 Total: -27.19 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.18 Total: -7.19 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.35 -8.37 -35.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242522987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.336 kcal (2) G-P(sol) polarization free energy of solvation -27.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds