Wall clock time and date at job start Tue Mar 31 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46892 * 2 1 4 4 N 1.31742 * 119.70681 * 270.01713 * 3 2 1 5 5 C 1.31881 * 121.86003 * 179.97438 * 4 3 2 6 6 C 1.38327 * 121.03183 * 0.02562 * 5 4 3 7 7 C 1.38409 * 119.28261 * 359.70215 * 6 5 4 8 8 C 1.39334 * 119.70124 * 90.00318 * 3 2 1 9 9 C 1.48337 * 120.53909 * 359.97438 * 8 3 2 10 10 C 1.38592 * 120.09654 * 244.99748 * 9 8 3 11 11 C 1.40614 * 119.57449 * 179.97438 * 10 9 8 12 12 C 1.41238 * 120.12211 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00134 * 150.12590 * 12 11 10 14 14 C 1.39865 * 119.99736 * 330.11849 * 12 11 10 15 15 N 1.30904 * 119.99632 * 161.66392 * 14 12 11 16 16 Si 1.86793 * 120.00421 * 341.67345 * 14 12 11 17 17 H 1.48508 * 109.47101 * 95.40983 * 16 14 12 18 18 H 1.48501 * 109.47600 * 215.41069 * 16 14 12 19 19 H 1.48499 * 109.47057 * 335.41326 * 16 14 12 20 20 C 1.40915 * 119.75706 * 0.02562 * 11 10 9 21 21 C 1.36407 * 120.19299 * 0.02562 * 20 11 10 22 22 C 1.39154 * 120.43699 * 0.25473 * 21 20 11 23 23 O 1.35604 * 119.88603 * 179.72621 * 22 21 20 24 24 C 1.42906 * 116.99745 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47440 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47421 * 300.00324 * 1 2 3 27 27 H 1.09008 * 109.46831 * 59.99631 * 1 2 3 28 28 H 1.09002 * 109.46830 * 240.00070 * 2 1 3 29 29 H 1.09000 * 109.46729 * 120.00098 * 2 1 3 30 30 H 1.07998 * 119.48744 * 180.02562 * 5 4 3 31 31 H 1.07997 * 120.35959 * 180.02562 * 6 5 4 32 32 H 1.07997 * 120.84593 * 180.27514 * 7 6 5 33 33 H 1.08003 * 120.21555 * 0.02679 * 10 9 8 34 34 H 0.96995 * 119.99412 * 180.02562 * 15 14 12 35 35 H 1.08004 * 119.90171 * 179.97438 * 20 11 10 36 36 H 1.07998 * 119.78655 * 179.97438 * 21 20 11 37 37 H 1.08993 * 109.46645 * 180.02562 * 24 23 22 38 38 H 1.09000 * 109.47202 * 300.00333 * 24 23 22 39 39 H 1.09002 * 109.46834 * 60.00446 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2496 2.0365 -1.1443 5 6 2.6883 3.2792 -1.1938 6 6 2.9410 3.9929 -0.0362 7 6 2.7227 3.3915 1.1912 8 6 2.2624 2.0717 1.2103 9 6 2.0166 1.3777 2.4980 10 6 1.0237 1.8299 3.3527 11 6 0.7997 1.1634 4.5704 12 6 -0.2095 1.6140 5.4499 13 1 -0.7163 0.9119 6.0953 14 6 -0.5523 2.9695 5.4849 15 7 -1.6935 3.3427 6.0065 16 14 0.6180 4.2473 4.7873 17 1 0.2328 4.5595 3.3874 18 1 0.5476 5.4834 5.6074 19 1 2.0041 3.7151 4.8122 20 6 1.5857 0.0442 4.9101 21 6 2.5610 -0.3920 4.0621 22 6 2.7935 0.2651 2.8576 23 8 3.7697 -0.1747 2.0255 24 6 4.5186 -1.3155 2.4498 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.8530 3.7469 -2.1532 31 1 3.2997 5.0102 -0.0894 32 1 2.9073 3.9268 2.1108 33 1 0.4253 2.6881 3.0849 34 1 -1.9314 4.2827 6.0305 35 1 1.4158 -0.4692 5.8450 36 1 3.1598 -1.2501 4.3292 37 1 5.2651 -1.5613 1.6947 38 1 5.0164 -1.0929 3.3936 39 1 3.8455 -2.1622 2.5849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242523865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:35 Heat of formation + Delta-G solvation = 6.265150 kcal Electronic energy + Delta-G solvation = -22391.214545 eV Core-core repulsion = 19263.409271 eV Total energy + Delta-G solvation = -3127.805275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.15177 -38.80552 -36.63785 -33.98267 -33.47652 -32.66513 -30.25308 -29.95715 -28.47726 -27.01599 -24.61457 -24.01296 -23.48085 -21.21109 -21.01297 -20.11546 -17.57268 -17.30492 -16.32534 -16.02551 -15.41479 -15.18233 -15.02909 -14.72990 -13.90628 -13.65523 -13.40369 -13.16998 -13.15912 -12.82039 -12.68801 -12.53632 -12.16210 -11.88937 -11.65746 -11.51164 -11.17214 -10.93440 -10.84568 -10.55617 -10.35854 -10.29888 -10.01492 -9.67148 -9.44931 -9.18735 -9.06848 -8.51470 -7.78351 -7.24777 -6.97919 -4.46092 1.41819 1.63684 2.39623 2.51090 3.05192 3.14286 3.24068 3.92472 4.06573 4.13799 4.36445 4.63796 5.10321 5.18661 5.23342 5.26136 5.47065 5.47612 5.54886 5.67390 5.71019 5.75019 5.81030 5.85351 5.91780 6.16757 6.22650 6.27049 6.38566 6.45716 6.54413 6.64588 6.66556 6.70032 6.84895 7.04261 7.11552 7.24316 7.41539 7.66933 7.81478 8.19892 8.30339 8.36459 8.57782 8.74709 10.05121 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.007873 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.986065 B = 3555.671424 C = 4470.328205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C 0.151 3.849 4 N -0.488 5.488 5 C 0.084 3.916 6 C -0.182 4.182 7 C -0.072 4.072 8 C -0.056 4.056 9 C -0.036 4.036 10 C -0.192 4.192 11 C 0.073 3.927 12 C -0.448 4.448 13 H 0.091 0.909 14 C 0.085 3.915 15 N -0.809 5.809 16 Si 0.899 3.101 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.243 1.243 20 C -0.167 4.167 21 C -0.157 4.157 22 C 0.012 3.988 23 O -0.323 6.323 24 C 0.036 3.964 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.149 0.851 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.285 0.715 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.054 -2.203 -8.189 11.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C 0.013 3.987 4 N -0.197 5.197 5 C -0.072 4.072 6 C -0.202 4.202 7 C -0.098 4.098 8 C -0.058 4.058 9 C -0.037 4.037 10 C -0.212 4.212 11 C 0.070 3.930 12 C -0.477 4.477 13 H 0.109 0.891 14 C -0.133 4.133 15 N -0.434 5.434 16 Si 0.725 3.275 17 H -0.194 1.194 18 H -0.216 1.216 19 H -0.167 1.167 20 C -0.187 4.187 21 C -0.175 4.175 22 C -0.032 4.032 23 O -0.238 6.238 24 C -0.060 4.060 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.732 -2.398 -9.041 12.136 hybrid contribution 0.607 1.134 0.868 1.551 sum 8.339 -1.264 -8.173 11.745 Atomic orbital electron populations 1.21683 0.94514 1.01692 1.02210 1.20517 0.96091 0.90784 1.03686 1.21311 0.93876 0.96374 0.87096 1.67403 1.12665 1.10180 1.29404 1.22569 0.96266 0.90455 0.97955 1.21954 1.03543 1.01246 0.93424 1.21691 0.95737 0.94155 0.98234 1.19663 0.98249 0.93775 0.94152 1.17495 0.97883 0.95195 0.93151 1.20909 1.01477 1.03784 0.94984 1.17606 0.91787 0.92156 0.91476 1.19350 1.14937 0.94014 1.19362 0.89065 1.26087 0.94545 1.00008 0.92691 1.69722 1.19194 1.19272 1.35215 0.86496 0.83369 0.78938 0.78677 1.19403 1.21634 1.16654 1.20703 0.97634 1.01085 0.99238 1.20501 1.01440 1.00723 0.94886 1.18366 0.94550 0.98076 0.92217 1.85910 1.46767 1.45912 1.45205 1.22770 0.95054 0.87912 1.00301 0.92381 0.91896 0.93058 0.91102 0.88736 0.83396 0.85307 0.85363 0.87382 0.90504 0.87654 0.87673 0.89814 0.93764 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.89 37.16 0.37 -1.95 16 2 C -0.07 -1.25 5.68 -27.88 -0.16 -1.41 16 3 C 0.15 2.84 5.86 -82.22 -0.48 2.36 16 4 N -0.49 -8.69 10.26 -9.20 -0.09 -8.78 16 5 C 0.08 1.29 11.17 -17.50 -0.20 1.09 16 6 C -0.18 -2.76 10.10 -39.49 -0.40 -3.16 16 7 C -0.07 -1.32 9.89 -38.94 -0.39 -1.70 16 8 C -0.06 -1.13 4.94 -104.75 -0.52 -1.64 16 9 C -0.04 -0.77 4.64 -104.80 -0.49 -1.26 16 10 C -0.19 -4.49 6.85 -38.55 -0.26 -4.75 16 11 C 0.07 1.76 5.10 -106.85 -0.55 1.21 16 12 C -0.45 -11.70 9.55 -37.83 -0.36 -12.06 16 13 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 14 C 0.09 2.19 5.40 -17.34 -0.09 2.09 16 15 N -0.81 -21.29 13.93 55.54 0.77 -20.52 16 16 Si 0.90 20.31 24.52 -169.99 -4.17 16.14 16 17 H -0.27 -5.94 6.70 56.52 0.38 -5.56 16 18 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.24 -5.55 6.87 56.52 0.39 -5.16 16 20 C -0.17 -3.65 9.72 -39.23 -0.38 -4.03 16 21 C -0.16 -3.09 8.95 -39.90 -0.36 -3.45 16 22 C 0.01 0.23 5.33 -38.43 -0.20 0.03 16 23 O -0.32 -5.89 8.46 -18.51 -0.16 -6.05 16 24 C 0.04 0.48 9.80 101.05 0.99 1.47 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.71 4.70 -51.93 -0.24 1.47 16 30 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.11 2.60 4.74 -52.48 -0.25 2.35 16 34 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 35 H 0.11 2.15 8.06 -52.48 -0.42 1.73 16 36 H 0.11 1.75 6.26 -52.49 -0.33 1.43 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.57 7.65 -51.93 -0.40 0.17 16 39 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 LS Contribution 321.01 15.07 4.84 4.84 Total: -1.00 -28.10 321.01 -7.29 -35.40 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.01 Total: 6.13 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -3.47 Total: -27.16 kcal Atomic # 7 Polarization: -29.98 SS G_CDS: 0.68 Total: -29.30 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.16 Total: -6.05 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.17 Total: 16.14 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.10 -7.29 -35.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242523865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.661 kcal (2) G-P(sol) polarization free energy of solvation -28.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds