Wall clock time and date at job start Tue Mar 31 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50691 * 109.47005 * 2 1 4 4 N 1.31753 * 119.70146 * 261.91199 * 3 2 1 5 5 C 1.31893 * 121.85048 * 180.31068 * 4 3 2 6 6 C 1.38309 * 121.03403 * 359.68666 * 5 4 3 7 7 C 1.38418 * 119.28500 * 0.02562 * 6 5 4 8 8 C 1.39317 * 119.70805 * 81.64607 * 3 2 1 9 9 C 1.48376 * 120.53136 * 0.02562 * 8 3 2 10 10 C 1.39926 * 119.92129 * 56.69060 * 9 8 3 11 11 C 1.38034 * 120.46993 * 180.27662 * 10 9 8 12 12 C 1.38517 * 120.30943 * 359.49229 * 11 10 9 13 13 O 1.35597 * 120.08709 * 180.27525 * 12 11 10 14 14 C 1.42900 * 116.99763 * 359.97438 * 13 12 11 15 15 C 1.41383 * 119.82649 * 0.25408 * 12 11 10 16 16 C 1.41189 * 120.22522 * 180.02562 * 15 12 11 17 17 H 1.07998 * 119.99968 * 334.95848 * 16 15 12 18 18 C 1.39908 * 119.99817 * 154.95801 * 16 15 12 19 19 N 1.30880 * 119.99977 * 344.72411 * 18 16 15 20 20 Si 1.86801 * 120.00067 * 164.72749 * 18 16 15 21 21 H 1.48500 * 109.46795 * 59.99675 * 20 18 16 22 22 H 1.48495 * 109.46845 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46610 * 299.99940 * 20 18 16 24 24 C 1.38615 * 119.91840 * 236.45703 * 9 8 3 25 25 H 1.09000 * 109.46946 * 184.61784 * 1 2 3 26 26 H 1.08995 * 109.47108 * 304.61820 * 1 2 3 27 27 H 1.08999 * 109.47337 * 64.62456 * 1 2 3 28 28 H 1.08999 * 109.47211 * 239.99440 * 2 1 3 29 29 H 1.09003 * 109.46664 * 119.99915 * 2 1 3 30 30 H 1.07998 * 119.48025 * 179.70050 * 5 4 3 31 31 H 1.08000 * 120.35984 * 179.97438 * 6 5 4 32 32 H 1.08003 * 120.84695 * 179.97438 * 7 6 5 33 33 H 1.07997 * 119.77120 * 0.02562 * 10 9 8 34 34 H 1.08000 * 119.84880 * 179.76624 * 11 10 9 35 35 H 1.09004 * 109.47351 * 60.00164 * 14 13 12 36 36 H 1.09004 * 109.47227 * 179.97438 * 14 13 12 37 37 H 1.08995 * 109.47807 * 300.00075 * 14 13 12 38 38 H 0.97000 * 119.99762 * 180.02562 * 19 18 16 39 39 H 1.08006 * 120.15581 * 359.96154 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.4017 1.9825 -1.1330 5 6 2.8532 3.2208 -1.1812 6 6 2.9522 3.9888 -0.0351 7 6 2.5708 3.4450 1.1793 8 6 2.0967 2.1303 1.1972 9 6 1.6753 1.4981 2.4717 10 6 2.2754 0.3057 2.8912 11 6 1.8881 -0.2952 4.0720 12 6 0.9069 0.2821 4.8611 13 8 0.5338 -0.3091 6.0230 14 6 1.1944 -1.5272 6.3723 15 6 0.2957 1.4896 4.4522 16 6 -0.7049 2.0857 5.2503 17 1 -1.2906 1.4785 5.9246 18 6 -0.9375 3.4628 5.1677 19 7 -0.0560 4.2421 4.5944 20 14 -2.5061 4.1892 5.8756 21 1 -2.5722 3.9008 7.3309 22 1 -2.5114 5.6587 5.6619 23 1 -3.6811 3.5855 5.1974 24 6 0.6915 2.0927 3.2463 25 1 -0.3633 -1.0243 0.0827 26 1 -0.3633 0.5838 0.8457 27 1 -0.3634 0.4404 -0.9285 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.1501 3.6418 -2.1304 31 1 3.3239 5.0015 -0.0870 32 1 2.6379 4.0219 2.0899 33 1 3.0442 -0.1500 2.2849 34 1 2.3553 -1.2175 4.3843 35 1 2.2651 -1.3459 6.4666 36 1 0.8033 -1.8933 7.3217 37 1 1.0190 -2.2714 5.5956 38 1 -0.2172 5.1969 4.5374 39 1 0.2315 3.0155 2.9246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242524416.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:29 Heat of formation + Delta-G solvation = 4.948424 kcal Electronic energy + Delta-G solvation = -21932.430854 eV Core-core repulsion = 18804.568482 eV Total energy + Delta-G solvation = -3127.862372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.92297 -38.59632 -36.26224 -34.15459 -33.44681 -32.12537 -29.98063 -29.72645 -27.87129 -26.52068 -25.27380 -23.94757 -22.95544 -21.03467 -20.90030 -19.92910 -17.50884 -16.66464 -16.04698 -15.96210 -15.42856 -14.87383 -14.70502 -14.61486 -13.87868 -13.52416 -13.42593 -13.08595 -12.81166 -12.54961 -12.47135 -12.28145 -11.75910 -11.63324 -11.44481 -11.25814 -11.13436 -10.91426 -10.84132 -10.59875 -10.43191 -10.09537 -9.87481 -9.59999 -9.26350 -9.18927 -8.96886 -8.34642 -7.55495 -6.96057 -6.69331 -4.30410 1.49286 1.75845 2.69559 2.85647 3.06800 3.10088 3.17006 3.93623 4.22963 4.45024 4.57177 4.70638 5.20455 5.35203 5.40953 5.46034 5.61122 5.71371 5.76097 5.78336 5.83250 5.83612 5.93664 6.07145 6.13116 6.22491 6.29141 6.32123 6.46335 6.65557 6.71264 6.78937 6.81291 7.05190 7.14073 7.23094 7.31095 7.59733 7.64705 7.90368 8.11380 8.32402 8.44028 8.63496 8.79492 8.99387 10.17538 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013529 B = 0.006646 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.072739 B = 4212.193294 C = 5495.742493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 C 0.131 3.869 4 N -0.490 5.490 5 C 0.077 3.923 6 C -0.181 4.181 7 C -0.066 4.066 8 C -0.055 4.055 9 C -0.066 4.066 10 C -0.190 4.190 11 C -0.178 4.178 12 C 0.020 3.980 13 O -0.312 6.312 14 C 0.034 3.966 15 C 0.095 3.905 16 C -0.443 4.443 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.800 5.800 20 Si 0.910 3.090 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.280 0.720 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -2.904 -4.624 6.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.007 4.007 4 N -0.199 5.199 5 C -0.080 4.080 6 C -0.201 4.201 7 C -0.092 4.092 8 C -0.056 4.056 9 C -0.067 4.067 10 C -0.209 4.209 11 C -0.197 4.197 12 C -0.025 4.025 13 O -0.226 6.226 14 C -0.062 4.062 15 C 0.093 3.907 16 C -0.473 4.473 17 H 0.100 0.900 18 C -0.144 4.144 19 N -0.426 5.426 20 Si 0.734 3.266 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.142 4.142 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.164 0.836 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.762 -3.052 -5.308 6.717 hybrid contribution -0.220 0.886 1.030 1.376 sum 2.542 -2.166 -4.278 5.427 Atomic orbital electron populations 1.21647 0.94397 1.01763 1.02078 1.20603 0.96602 0.90959 1.03406 1.21360 0.95087 0.96671 0.87565 1.67393 1.11288 1.12065 1.29111 1.22526 0.97314 0.90187 0.97943 1.21992 1.03190 1.01115 0.93773 1.21828 0.94514 0.94495 0.98338 1.19874 0.97401 0.93869 0.94501 1.18197 0.99739 0.95861 0.92888 1.20029 1.04730 0.97625 0.98527 1.20520 1.01109 1.00648 0.97426 1.19334 0.98693 0.97422 0.87010 1.85961 1.61538 1.36736 1.38342 1.22745 0.97041 0.86549 0.99841 1.16959 0.92807 0.88921 0.92058 1.19390 1.15370 0.92395 1.20114 0.89969 1.25873 0.97167 0.97310 0.94044 1.69790 1.32299 1.05909 1.34585 0.86332 0.82177 0.77767 0.80291 1.18986 1.20411 1.18864 1.21201 0.98890 1.01144 0.92944 0.92504 0.91593 0.93325 0.91240 0.88745 0.83650 0.85479 0.84463 0.88885 0.88363 0.94118 0.90017 0.94149 0.90889 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.86 37.16 0.37 -1.93 16 2 C -0.08 -1.31 5.67 -27.89 -0.16 -1.46 16 3 C 0.13 2.44 6.05 -82.23 -0.50 1.94 16 4 N -0.49 -8.75 10.26 -9.20 -0.09 -8.85 16 5 C 0.08 1.20 11.17 -17.50 -0.20 1.00 16 6 C -0.18 -2.79 10.10 -39.49 -0.40 -3.19 16 7 C -0.07 -1.22 9.78 -38.94 -0.38 -1.60 16 8 C -0.05 -1.09 5.39 -104.75 -0.56 -1.65 16 9 C -0.07 -1.44 4.33 -104.95 -0.45 -1.90 16 10 C -0.19 -3.98 7.80 -39.02 -0.30 -4.28 16 11 C -0.18 -3.80 9.01 -39.55 -0.36 -4.15 16 12 C 0.02 0.48 6.72 -38.28 -0.26 0.22 16 13 O -0.31 -6.99 9.77 -18.49 -0.18 -7.17 16 14 C 0.03 0.56 9.81 101.05 0.99 1.55 16 15 C 0.10 2.46 5.59 -106.72 -0.60 1.87 16 16 C -0.44 -11.62 8.72 -37.84 -0.33 -11.95 16 17 H 0.08 2.15 7.63 -52.49 -0.40 1.75 16 18 C 0.07 1.79 5.19 -17.33 -0.09 1.70 16 19 N -0.80 -19.95 10.84 55.55 0.60 -19.35 16 20 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 C -0.12 -3.00 8.25 -38.58 -0.32 -3.32 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.23 7.56 -51.93 -0.39 0.84 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.61 4.80 -51.93 -0.25 1.36 16 30 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.14 2.56 8.06 -52.48 -0.42 2.13 16 33 H 0.09 1.78 7.11 -52.49 -0.37 1.41 16 34 H 0.10 1.82 6.27 -52.49 -0.33 1.49 16 35 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 38 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 39 H 0.13 3.34 6.09 -52.48 -0.32 3.02 16 LS Contribution 325.03 15.07 4.90 4.90 Total: -1.00 -27.83 325.03 -8.30 -36.14 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.95 Total: 7.85 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -3.54 Total: -27.16 kcal Atomic # 7 Polarization: -28.70 SS G_CDS: 0.51 Total: -28.20 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.18 Total: -7.17 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.83 -8.30 -36.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242524416.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.084 kcal (2) G-P(sol) polarization free energy of solvation -27.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds