Wall clock time and date at job start Tue Mar 31 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38873 * 119.24950 * 2 1 4 4 C 1.36888 * 119.80366 * 179.74035 * 3 2 1 5 5 C 1.41126 * 118.39014 * 0.52328 * 4 3 2 6 6 C 1.40881 * 120.71487 * 179.72361 * 5 4 3 7 7 H 1.08002 * 119.99825 * 151.67339 * 6 5 4 8 8 C 1.40069 * 120.00597 * 331.66776 * 6 5 4 9 9 N 1.30775 * 119.99728 * 348.23155 * 8 6 5 10 10 Si 1.86795 * 120.00287 * 168.22532 * 8 6 5 11 11 H 1.48502 * 109.47411 * 60.00444 * 10 8 6 12 12 H 1.48508 * 109.47278 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47271 * 300.00016 * 10 8 6 14 14 C 1.41864 * 118.56174 * 359.74477 * 5 4 3 15 15 C 1.47826 * 119.98820 * 179.97438 * 14 5 4 16 16 C 1.39690 * 120.15102 * 316.15625 * 15 14 5 17 17 C 1.37905 * 119.84349 * 179.74308 * 16 15 14 18 18 C 1.38423 * 120.14668 * 0.53293 * 17 16 15 19 19 C 1.38370 * 120.31267 * 359.72142 * 18 17 16 20 20 C 1.50703 * 119.92722 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.46987 * 205.02542 * 20 19 18 22 22 C 1.52997 * 109.47242 * 85.01792 * 20 19 18 23 23 O 1.42903 * 109.46670 * 325.01897 * 20 19 18 24 24 C 1.37941 * 120.14863 * 0.02562 * 19 18 17 25 25 N 1.31740 * 119.25284 * 180.27407 * 2 1 3 26 26 H 1.09000 * 109.47339 * 269.72694 * 1 2 3 27 27 H 1.08996 * 109.46958 * 149.72598 * 1 2 3 28 28 H 1.08996 * 109.47433 * 29.72568 * 1 2 3 29 29 H 1.08008 * 120.09655 * 0.02913 * 3 2 1 30 30 H 1.08001 * 120.80400 * 180.24520 * 4 3 2 31 31 H 0.97002 * 120.00145 * 179.97438 * 9 8 6 32 32 H 1.07997 * 120.08225 * 359.97302 * 16 15 14 33 33 H 1.07997 * 119.92381 * 180.25386 * 17 16 15 34 34 H 1.08010 * 119.84166 * 179.74354 * 18 17 16 35 35 H 1.09003 * 109.46792 * 179.97438 * 22 20 19 36 36 H 1.08997 * 109.47004 * 300.00369 * 22 20 19 37 37 H 1.09001 * 109.46976 * 60.00332 * 22 20 19 38 38 H 0.96703 * 113.99417 * 180.02562 * 23 20 19 39 39 H 1.08007 * 120.07480 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5543 1.2249 0.0054 5 6 4.2373 -0.0100 -0.0005 6 6 5.6454 -0.0535 -0.0012 7 1 6.1599 -0.8952 0.4386 8 6 6.3783 0.9946 -0.5723 9 7 5.7722 1.8939 -1.3032 10 14 8.2213 1.1081 -0.2899 11 1 8.8787 -0.1162 -0.8137 12 1 8.7580 2.2992 -0.9960 13 1 8.4925 1.2318 1.1648 14 6 3.4752 -1.2066 -0.0062 15 6 4.1582 -2.5176 -0.0130 16 6 5.2547 -2.7331 -0.8513 17 6 5.8904 -3.9569 -0.8487 18 6 5.4375 -4.9738 -0.0260 19 6 4.3487 -4.7689 0.8029 20 6 3.8633 -5.8819 1.6955 21 1 2.8075 -5.7322 1.9214 22 6 4.6686 -5.8805 2.9964 23 8 4.0349 -7.1350 1.0303 24 6 3.7066 -3.5481 0.8142 25 7 2.1507 -1.1494 -0.0055 26 1 -0.3634 -0.0049 1.0276 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3634 0.8924 -0.5095 29 1 1.6348 2.1408 0.0005 30 1 4.0983 2.1579 0.0094 31 1 6.2797 2.6200 -1.6984 32 1 5.6061 -1.9421 -1.4972 33 1 6.7408 -4.1236 -1.4932 34 1 5.9366 -5.9317 -0.0310 35 1 4.3171 -6.6853 3.6421 36 1 5.7243 -6.0303 2.7703 37 1 4.5376 -4.9247 3.5037 38 1 3.7424 -7.8980 1.5474 39 1 2.8571 -3.3893 1.4621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242547469.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:57 Heat of formation + Delta-G solvation = -17.175602 kcal Electronic energy + Delta-G solvation = -21550.330343 eV Core-core repulsion = 18421.508601 eV Total energy + Delta-G solvation = -3128.821742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.23956 -38.24743 -36.59843 -34.36350 -32.38425 -31.56650 -30.89501 -29.26270 -28.81151 -27.64580 -24.52491 -23.45711 -22.62298 -21.08617 -20.62948 -19.45288 -17.44689 -16.99722 -16.17618 -15.61703 -14.98619 -14.73170 -14.44472 -14.20647 -13.86515 -13.62550 -13.20314 -13.03528 -12.56351 -12.53256 -12.23542 -11.99398 -11.84896 -11.60293 -11.51299 -11.46102 -11.23332 -11.13575 -10.98044 -10.71439 -10.52312 -10.23121 -10.02481 -9.78559 -9.42438 -8.54988 -8.16925 -8.08898 -7.92149 -7.29453 -6.89876 -4.53077 1.87805 2.07370 2.61560 2.96154 2.97395 3.00489 3.13116 3.78957 4.31029 4.48359 4.55822 5.02307 5.23734 5.33102 5.38131 5.55907 5.66826 5.77339 5.83313 5.85372 6.02438 6.09508 6.19355 6.26400 6.29391 6.34241 6.37863 6.50522 6.64864 6.75791 6.82373 6.92586 7.01296 7.07399 7.19714 7.29020 7.47065 7.62244 7.70226 7.74364 7.85399 7.90348 8.35050 8.57099 8.63792 9.55677 9.97629 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.006478 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.227942 B = 4321.319502 C = 6045.214750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.008 4.008 3 C -0.144 4.144 4 C -0.126 4.126 5 C 0.084 3.916 6 C -0.439 4.439 7 H 0.088 0.912 8 C 0.073 3.927 9 N -0.790 5.790 10 Si 0.911 3.089 11 H -0.261 1.261 12 H -0.277 1.277 13 H -0.262 1.262 14 C 0.018 3.982 15 C 0.023 3.977 16 C -0.090 4.090 17 C -0.134 4.134 18 C -0.112 4.112 19 C -0.099 4.099 20 C 0.147 3.853 21 H 0.060 0.940 22 C -0.178 4.178 23 O -0.563 6.563 24 C -0.100 4.100 25 N -0.450 5.450 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.285 0.715 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.372 0.628 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -7.730 4.305 8.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.150 4.150 3 C -0.164 4.164 4 C -0.152 4.152 5 C 0.079 3.921 6 C -0.469 4.469 7 H 0.106 0.894 8 C -0.146 4.146 9 N -0.414 5.414 10 Si 0.735 3.265 11 H -0.185 1.185 12 H -0.202 1.202 13 H -0.186 1.186 14 C -0.120 4.120 15 C 0.022 3.978 16 C -0.108 4.108 17 C -0.152 4.152 18 C -0.131 4.131 19 C -0.100 4.100 20 C 0.088 3.912 21 H 0.078 0.922 22 C -0.236 4.236 23 O -0.368 6.368 24 C -0.119 4.119 25 N -0.158 5.158 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.096 0.904 32 H 0.151 0.849 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.219 0.781 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.532 -7.862 3.679 8.697 hybrid contribution 1.107 0.789 0.496 1.447 sum 0.575 -7.073 4.175 8.233 Atomic orbital electron populations 1.20282 0.91546 1.00928 1.00400 1.20266 0.94849 0.88557 1.11279 1.21262 0.95468 0.97106 1.02583 1.21436 0.92567 0.98910 1.02254 1.18331 0.94129 0.90790 0.88850 1.19580 0.91006 1.04542 1.31732 0.89372 1.25995 1.01616 0.94137 0.92810 1.69735 1.38867 1.10829 1.22007 0.86294 0.81378 0.78927 0.79939 1.18511 1.20155 1.18639 1.19472 0.88307 0.91335 1.12926 1.18339 0.93841 0.91479 0.94135 1.21503 0.94845 0.96535 0.97960 1.20990 1.00434 0.93606 1.00211 1.20765 0.96863 0.98406 0.97018 1.19293 0.97528 0.93740 0.99394 1.20501 0.97597 0.82715 0.90337 0.92223 1.22478 1.01543 1.02434 0.97141 1.86579 1.87852 1.15730 1.46650 1.20959 0.99346 0.92106 0.99470 1.66842 1.09642 1.29260 1.10070 0.93193 0.92593 0.92905 0.88344 0.85429 0.90383 0.84873 0.86810 0.86790 0.92634 0.91724 0.91286 0.78140 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.15 36.00 0.37 -0.97 16 2 C -0.01 -0.18 6.79 -82.40 -0.56 -0.74 16 3 C -0.14 -3.30 9.64 -39.84 -0.38 -3.68 16 4 C -0.13 -3.15 8.72 -38.98 -0.34 -3.49 16 5 C 0.08 2.15 5.54 -106.42 -0.59 1.56 16 6 C -0.44 -10.88 6.73 -37.90 -0.26 -11.13 16 7 H 0.09 2.14 6.48 -52.49 -0.34 1.80 16 8 C 0.07 1.72 5.26 -17.32 -0.09 1.63 16 9 N -0.79 -19.12 10.91 55.55 0.61 -18.52 16 10 Si 0.91 17.75 29.58 -169.99 -5.03 12.72 16 11 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 12 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 13 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 14 C 0.02 0.44 6.43 -82.24 -0.53 -0.09 16 15 C 0.02 0.52 5.25 -104.90 -0.55 -0.03 16 16 C -0.09 -1.90 7.85 -39.16 -0.31 -2.21 16 17 C -0.13 -2.47 10.03 -39.64 -0.40 -2.86 16 18 C -0.11 -1.98 9.35 -39.46 -0.37 -2.35 16 19 C -0.10 -1.76 5.00 -104.68 -0.52 -2.29 16 20 C 0.15 2.06 3.79 -27.88 -0.11 1.95 16 21 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 22 C -0.18 -2.11 9.52 37.16 0.35 -1.76 16 23 O -0.56 -7.39 12.46 -35.23 -0.44 -7.83 16 24 C -0.10 -2.01 9.29 -39.16 -0.36 -2.38 16 25 N -0.45 -11.06 10.05 -5.45 -0.05 -11.12 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.10 1.97 8.06 -52.48 -0.42 1.54 16 30 H 0.13 3.22 6.33 -52.49 -0.33 2.89 16 31 H 0.29 6.30 8.29 -40.82 -0.34 5.97 16 32 H 0.13 2.97 6.76 -52.49 -0.35 2.61 16 33 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.11 1.83 7.62 -52.48 -0.40 1.43 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.37 2.98 9.08 45.56 0.41 3.39 16 39 H 0.12 2.29 8.06 -52.48 -0.42 1.86 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -28.32 329.21 -8.97 -37.29 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -4.37 Total: 11.33 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -4.65 Total: -28.83 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.55 Total: -29.63 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.44 Total: -7.83 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.32 -8.97 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242547469.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.112 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds