Wall clock time and date at job start Tue Mar 31 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31262 * 119.79802 * 2 1 4 4 C 1.33020 * 121.72318 * 180.02562 * 3 2 1 5 5 C 1.47970 * 119.44772 * 179.97438 * 4 3 2 6 6 C 1.39629 * 120.14420 * 185.00075 * 5 4 3 7 7 C 1.37911 * 119.85445 * 180.02562 * 6 5 4 8 8 C 1.38404 * 120.14633 * 0.02562 * 7 6 5 9 9 C 1.38375 * 120.29304 * 359.95958 * 8 7 6 10 10 C 1.50701 * 119.92914 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47114 * 160.00432 * 10 9 8 12 12 C 1.53000 * 109.46718 * 280.00205 * 10 9 8 13 13 O 1.42904 * 109.47052 * 39.99842 * 10 9 8 14 14 C 1.37959 * 120.14281 * 0.29544 * 9 8 7 15 15 C 1.39886 * 121.10241 * 0.25224 * 4 3 2 16 16 C 1.36616 * 119.46392 * 359.46482 * 15 4 3 17 17 C 1.40949 * 119.79829 * 179.97438 * 2 1 3 18 18 C 1.41051 * 120.55512 * 359.97349 * 17 2 1 19 19 H 1.07997 * 120.00054 * 329.71927 * 18 17 2 20 20 C 1.40028 * 120.00025 * 149.71050 * 18 17 2 21 21 N 1.30787 * 120.00286 * 162.34413 * 20 18 17 22 22 Si 1.86804 * 119.99929 * 342.34820 * 20 18 17 23 23 H 1.48498 * 109.46973 * 95.35276 * 22 20 18 24 24 H 1.48497 * 109.47197 * 215.35445 * 22 20 18 25 25 H 1.48502 * 109.47023 * 335.35355 * 22 20 18 26 26 H 1.08995 * 109.47537 * 90.00195 * 1 2 3 27 27 H 1.09001 * 109.47107 * 210.00658 * 1 2 3 28 28 H 1.09006 * 109.47228 * 330.00166 * 1 2 3 29 29 H 1.08008 * 120.07272 * 0.03678 * 6 5 4 30 30 H 1.08000 * 119.92998 * 179.97438 * 7 6 5 31 31 H 1.07999 * 119.85779 * 179.97438 * 8 7 6 32 32 H 1.09003 * 109.46556 * 179.97438 * 12 10 9 33 33 H 1.08999 * 109.47317 * 299.99286 * 12 10 9 34 34 H 1.08998 * 109.47575 * 60.00562 * 12 10 9 35 35 H 0.96701 * 114.00285 * 300.00476 * 13 10 9 36 36 H 1.07999 * 120.07074 * 179.72694 * 14 9 8 37 37 H 1.07998 * 120.27311 * 179.72071 * 15 4 3 38 38 H 1.07999 * 120.79271 * 180.26784 * 16 15 4 39 39 H 0.96994 * 120.00172 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1391 0.0000 4 6 3.4887 1.1838 -0.0005 5 6 4.1725 2.4960 -0.0011 6 6 5.5632 2.5620 -0.1068 7 6 6.1944 3.7882 -0.1062 8 6 5.4524 4.9518 -0.0005 9 6 4.0739 4.8935 0.1043 10 6 3.2741 6.1656 0.2185 11 1 2.2390 5.9704 -0.0618 12 6 3.3250 6.6722 1.6612 13 8 3.8253 7.1547 -0.6534 14 6 3.4306 3.6731 0.1102 15 6 4.2512 0.0110 -0.0063 16 6 3.6202 -1.2008 -0.0005 17 6 2.2074 -1.2231 0.0005 18 6 1.5097 -2.4490 0.0017 19 1 0.5409 -2.5185 0.4737 20 6 2.0732 -3.5759 -0.6094 21 7 1.6199 -4.7693 -0.3253 22 14 3.4725 -3.3746 -1.8305 23 1 4.7699 -3.5536 -1.1304 24 1 3.3441 -4.3936 -2.9030 25 1 3.4160 -2.0165 -2.4286 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 6.1434 1.6547 -0.1892 30 1 7.2700 3.8406 -0.1876 31 1 5.9515 5.9095 -0.0001 32 1 2.7468 7.5926 1.7437 33 1 2.9045 5.9179 2.3263 34 1 4.3600 6.8676 1.9415 35 1 4.7463 7.3785 -0.4619 36 1 2.3549 3.6288 0.1966 37 1 5.3299 0.0629 -0.0112 38 1 4.1877 -2.1196 -0.0005 39 1 2.0104 -5.5499 -0.7483 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242550112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:59 Heat of formation + Delta-G solvation = -16.505703 kcal Electronic energy + Delta-G solvation = -21149.771289 eV Core-core repulsion = 18020.978596 eV Total energy + Delta-G solvation = -3128.792693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.60978 -38.64777 -36.80090 -34.27080 -32.60632 -31.85100 -31.65770 -29.86970 -29.08613 -27.26172 -25.15791 -23.77543 -22.59881 -21.56373 -20.93104 -19.69406 -17.72674 -17.37875 -16.06770 -15.81459 -15.46683 -15.08619 -14.99580 -14.16940 -13.75568 -13.59255 -13.54626 -13.34514 -13.16005 -12.89957 -12.45036 -12.17061 -12.10010 -11.96689 -11.76107 -11.55328 -11.33269 -11.22237 -11.03000 -10.85732 -10.76429 -10.35895 -10.05838 -9.97727 -9.68104 -8.80897 -8.52208 -8.47341 -8.26789 -7.42116 -7.26903 -4.70839 1.35511 1.72133 2.42362 2.60842 2.92533 3.03288 3.13286 3.74219 3.98915 4.39025 4.52723 4.72332 5.00911 5.08338 5.15044 5.24190 5.26926 5.41314 5.57058 5.71097 5.71747 5.84666 5.92665 5.97849 6.00902 6.16793 6.24535 6.37590 6.44272 6.53229 6.54091 6.65616 6.73800 6.78635 6.83447 6.98514 7.12913 7.29338 7.42938 7.47624 7.54866 7.64574 8.00984 8.25720 8.42417 9.30100 9.71755 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027917 B = 0.004121 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.738356 B = 6792.852264 C = 7485.208289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.033 3.967 3 N -0.440 5.440 4 C -0.007 4.007 5 C 0.022 3.978 6 C -0.135 4.135 7 C -0.113 4.113 8 C -0.142 4.142 9 C -0.118 4.118 10 C 0.145 3.855 11 H 0.106 0.894 12 C -0.178 4.178 13 O -0.560 6.560 14 C -0.101 4.101 15 C -0.099 4.099 16 C -0.215 4.215 17 C 0.051 3.949 18 C -0.412 4.412 19 H 0.103 0.897 20 C 0.082 3.918 21 N -0.785 5.785 22 Si 0.912 3.088 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.244 1.244 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.371 0.629 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 12.287 0.931 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 N -0.148 5.148 4 C -0.139 4.139 5 C 0.021 3.979 6 C -0.154 4.154 7 C -0.131 4.131 8 C -0.160 4.160 9 C -0.118 4.118 10 C 0.086 3.914 11 H 0.124 0.876 12 C -0.236 4.236 13 O -0.365 6.365 14 C -0.119 4.119 15 C -0.119 4.119 16 C -0.239 4.239 17 C 0.046 3.954 18 C -0.440 4.440 19 H 0.121 0.879 20 C -0.140 4.140 21 N -0.407 5.407 22 Si 0.737 3.263 23 H -0.192 1.192 24 H -0.212 1.212 25 H -0.167 1.167 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.218 0.782 36 H 0.148 0.852 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.587 12.735 0.674 13.553 hybrid contribution 1.819 -1.190 -0.190 2.182 sum 6.405 11.545 0.484 13.212 Atomic orbital electron populations 1.20311 0.90347 1.01313 1.01193 1.21061 0.95460 0.87502 1.07494 1.66783 1.08587 1.30311 1.09149 1.18714 0.89034 0.90625 1.15520 1.18630 0.92070 0.91941 0.95241 1.21200 0.93905 0.97618 1.02644 1.20847 0.99128 0.92342 1.00785 1.20630 0.93227 0.97707 1.04486 1.20373 0.94358 0.95403 1.01680 1.20794 0.96976 0.84296 0.89343 0.87616 1.22470 1.02472 1.01864 0.96758 1.86604 1.31509 1.59822 1.58611 1.21058 1.00411 0.90437 1.00030 1.21224 0.98830 0.93166 0.98660 1.21020 0.94731 0.96629 1.11557 1.18503 0.91930 0.94283 0.90679 1.19625 1.05294 0.90866 1.28220 0.87903 1.26294 0.97042 0.94167 0.96541 1.69648 1.37465 0.99448 1.34154 0.86276 0.80044 0.80186 0.79772 1.19229 1.21159 1.16683 0.92477 0.91267 0.92943 0.86218 0.86612 0.87267 0.91802 0.91190 0.92337 0.78169 0.85249 0.87566 0.87213 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.79 36.00 0.35 -1.11 16 2 C 0.03 0.77 6.86 -81.81 -0.56 0.21 16 3 N -0.44 -10.14 9.32 -5.39 -0.05 -10.19 16 4 C -0.01 -0.16 6.73 -82.75 -0.56 -0.72 16 5 C 0.02 0.42 5.88 -104.89 -0.62 -0.20 16 6 C -0.13 -2.22 9.41 -39.18 -0.37 -2.59 16 7 C -0.11 -1.57 10.03 -39.64 -0.40 -1.97 16 8 C -0.14 -1.89 9.32 -39.47 -0.37 -2.26 16 9 C -0.12 -1.72 4.97 -104.67 -0.52 -2.24 16 10 C 0.14 1.79 3.82 -27.88 -0.11 1.68 16 11 H 0.11 1.34 8.00 -51.93 -0.42 0.93 16 12 C -0.18 -1.82 9.51 37.16 0.35 -1.47 16 13 O -0.56 -6.82 13.19 -35.23 -0.46 -7.29 16 14 C -0.10 -1.76 9.19 -39.18 -0.36 -2.12 16 15 C -0.10 -2.14 9.38 -39.55 -0.37 -2.51 16 16 C -0.22 -5.00 7.21 -39.01 -0.28 -5.28 16 17 C 0.05 1.25 5.10 -106.64 -0.54 0.70 16 18 C -0.41 -10.21 8.92 -37.85 -0.34 -10.55 16 19 H 0.10 2.60 6.54 -52.49 -0.34 2.25 16 20 C 0.08 1.97 5.42 -17.33 -0.09 1.88 16 21 N -0.79 -19.14 13.93 55.55 0.77 -18.37 16 22 Si 0.91 19.46 24.53 -169.99 -4.17 15.29 16 23 H -0.27 -5.49 6.71 56.52 0.38 -5.11 16 24 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.24 -5.49 6.85 56.52 0.39 -5.10 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 1.34 6.31 -51.93 -0.33 1.01 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.12 1.83 6.18 -52.48 -0.32 1.50 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.11 1.10 6.77 -52.49 -0.36 0.75 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.37 3.19 7.49 45.56 0.34 3.53 16 36 H 0.13 2.33 7.51 -52.49 -0.39 1.94 16 37 H 0.11 1.97 6.18 -52.49 -0.32 1.65 16 38 H 0.11 2.47 4.83 -52.49 -0.25 2.22 16 39 H 0.29 6.40 8.29 -40.82 -0.34 6.06 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -27.49 320.03 -7.97 -35.46 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.10 Total: 8.81 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -4.78 Total: -28.53 kcal Atomic # 7 Polarization: -29.28 SS G_CDS: 0.72 Total: -28.56 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.46 Total: -7.29 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.17 Total: 15.29 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.49 -7.97 -35.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242550112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.953 kcal (2) G-P(sol) polarization free energy of solvation -27.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds