Wall clock time and date at job start Tue Mar 31 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31266 * 119.79356 * 2 1 4 4 C 1.33027 * 121.71912 * 180.02562 * 3 2 1 5 5 C 1.47969 * 119.44683 * 180.02562 * 4 3 2 6 6 C 1.39627 * 120.14508 * 179.72289 * 5 4 3 7 7 C 1.37914 * 119.84990 * 179.67870 * 6 5 4 8 8 C 1.38406 * 120.14794 * 0.62038 * 7 6 5 9 9 C 1.38370 * 120.29169 * 359.67314 * 8 7 6 10 10 C 1.50698 * 119.92742 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47395 * 204.98274 * 10 9 8 12 12 C 1.52999 * 109.46989 * 84.98079 * 10 9 8 13 13 O 1.42904 * 109.47374 * 324.98553 * 10 9 8 14 14 C 1.37960 * 120.14461 * 0.02562 * 9 8 7 15 15 C 1.39885 * 121.10248 * 0.02562 * 4 3 2 16 16 C 1.36607 * 119.46752 * 359.97438 * 15 4 3 17 17 C 1.40947 * 119.80068 * 180.02562 * 2 1 3 18 18 C 1.41052 * 120.55432 * 359.97362 * 17 2 1 19 19 H 1.08001 * 119.99857 * 24.92594 * 18 17 2 20 20 C 1.40024 * 119.99933 * 204.92524 * 18 17 2 21 21 N 1.30781 * 120.00424 * 14.68746 * 20 18 17 22 22 Si 1.86803 * 119.99940 * 194.68200 * 20 18 17 23 23 H 1.48505 * 109.46752 * 60.00177 * 22 20 18 24 24 H 1.48499 * 109.47192 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47171 * 300.00486 * 22 20 18 26 26 H 1.09003 * 109.47125 * 90.00086 * 1 2 3 27 27 H 1.09004 * 109.47083 * 209.99388 * 1 2 3 28 28 H 1.08996 * 109.47350 * 329.99780 * 1 2 3 29 29 H 1.08006 * 120.07112 * 359.97438 * 6 5 4 30 30 H 1.07998 * 119.92240 * 180.29577 * 7 6 5 31 31 H 1.07997 * 119.85593 * 179.70050 * 8 7 6 32 32 H 1.09004 * 109.47160 * 59.99890 * 12 10 9 33 33 H 1.08997 * 109.47263 * 179.97438 * 12 10 9 34 34 H 1.08998 * 109.47211 * 300.00307 * 12 10 9 35 35 H 0.96703 * 113.99946 * 59.99138 * 13 10 9 36 36 H 1.08000 * 120.07046 * 179.97438 * 14 9 8 37 37 H 1.08006 * 120.27050 * 180.02562 * 15 4 3 38 38 H 1.07999 * 120.79460 * 179.97438 * 16 15 4 39 39 H 0.97002 * 120.00847 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1392 0.0000 4 6 3.4887 1.1839 -0.0005 5 6 4.1725 2.4961 0.0001 6 6 5.5673 2.5600 0.0054 7 6 6.1983 3.7863 -0.0008 8 6 5.4521 4.9520 0.0008 9 6 4.0695 4.8957 0.0016 10 6 3.2652 6.1701 0.0027 11 1 2.2838 5.9800 0.4373 12 6 3.0988 6.6693 -1.4339 13 8 3.9445 7.1616 0.7757 14 6 3.4258 3.6755 0.0016 15 6 4.2512 0.0110 -0.0016 16 6 3.6203 -1.2006 -0.0016 17 6 2.2075 -1.2231 -0.0005 18 6 1.5098 -2.4490 -0.0005 19 1 0.5054 -2.4986 -0.3943 20 6 2.1195 -3.6015 0.5100 21 7 3.2003 -3.5011 1.2396 22 14 1.3890 -5.2825 0.1492 23 1 1.3675 -5.5081 -1.3184 24 1 2.2151 -6.3312 0.7997 25 1 0.0035 -5.3444 0.6799 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 6.1507 1.6511 0.0095 30 1 7.2771 3.8371 -0.0015 31 1 5.9511 5.9098 0.0008 32 1 2.5806 5.9130 -2.0237 33 1 2.5166 7.5908 -1.4333 34 1 4.0801 6.8594 -1.8685 35 1 4.8267 7.3811 0.4460 36 1 2.3467 3.6330 0.0027 37 1 5.3300 0.0630 -0.0016 38 1 4.1878 -2.1195 -0.0029 39 1 3.6225 -4.2995 1.5936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242550114.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:02 Heat of formation + Delta-G solvation = -19.182477 kcal Electronic energy + Delta-G solvation = -21045.300392 eV Core-core repulsion = 17916.391626 eV Total energy + Delta-G solvation = -3128.908767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.46216 -38.42272 -36.70651 -34.34043 -32.45105 -31.70104 -31.02513 -29.60649 -29.00146 -27.01322 -25.19473 -23.71811 -22.50081 -21.50526 -20.46438 -19.61994 -17.52649 -17.29275 -15.90382 -15.72008 -15.35453 -15.00494 -14.64015 -14.17965 -13.68409 -13.49931 -13.34772 -13.22524 -13.04006 -12.64762 -12.09026 -11.99524 -11.90206 -11.78705 -11.67045 -11.40262 -11.32973 -11.12606 -10.98386 -10.83386 -10.75587 -10.53997 -9.98665 -9.85916 -9.57775 -8.65741 -8.36119 -8.30602 -8.12156 -7.28426 -7.00033 -4.60042 1.51243 1.83151 2.62653 2.88486 2.91422 2.93466 3.12178 3.69711 4.11766 4.45181 4.62147 4.80830 5.10614 5.18835 5.26697 5.34833 5.51912 5.52854 5.65855 5.82687 5.86551 6.01081 6.05530 6.09108 6.26236 6.36270 6.40451 6.55455 6.58530 6.67553 6.75293 6.78836 6.89303 6.93136 7.01353 7.20754 7.26721 7.42157 7.60750 7.65060 7.74269 7.85034 8.26318 8.46735 8.57205 9.52436 9.84447 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032045 B = 0.003681 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.550022 B = 7604.917821 C = 8271.675876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.008 3.992 3 N -0.446 5.446 4 C -0.006 4.006 5 C 0.026 3.974 6 C -0.135 4.135 7 C -0.113 4.113 8 C -0.145 4.145 9 C -0.119 4.119 10 C 0.145 3.855 11 H 0.106 0.894 12 C -0.178 4.178 13 O -0.560 6.560 14 C -0.104 4.104 15 C -0.125 4.125 16 C -0.143 4.143 17 C 0.074 3.926 18 C -0.429 4.429 19 H 0.089 0.911 20 C 0.071 3.929 21 N -0.777 5.777 22 Si 0.917 3.083 23 H -0.260 1.260 24 H -0.276 1.276 25 H -0.261 1.261 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.371 0.629 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.564 8.649 -3.104 9.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.138 4.138 3 N -0.154 5.154 4 C -0.139 4.139 5 C 0.025 3.975 6 C -0.154 4.154 7 C -0.132 4.132 8 C -0.163 4.163 9 C -0.119 4.119 10 C 0.086 3.914 11 H 0.123 0.877 12 C -0.235 4.235 13 O -0.366 6.366 14 C -0.123 4.123 15 C -0.145 4.145 16 C -0.168 4.168 17 C 0.069 3.931 18 C -0.458 4.458 19 H 0.107 0.893 20 C -0.150 4.150 21 N -0.401 5.401 22 Si 0.740 3.260 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.186 1.186 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.218 0.782 36 H 0.146 0.854 37 H 0.119 0.881 38 H 0.147 0.853 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.739 9.242 -2.607 9.758 hybrid contribution 0.952 -1.772 -0.401 2.051 sum 2.691 7.470 -3.007 8.490 Atomic orbital electron populations 1.20262 0.90980 1.01283 1.00399 1.21002 0.95151 0.87993 1.09643 1.66721 1.08627 1.30418 1.09620 1.18729 0.89094 0.90628 1.15490 1.18683 0.92046 0.92082 0.94720 1.21213 0.93950 0.97570 1.02668 1.20844 0.99038 0.92373 1.00902 1.20595 0.93160 0.97630 1.04964 1.20355 0.94352 0.95335 1.01853 1.20780 0.95086 0.84290 0.91214 0.87660 1.22463 1.02473 1.01850 0.96735 1.86598 1.33721 1.59719 1.56591 1.21041 1.00386 0.90445 1.00402 1.21303 0.98611 0.93481 1.01123 1.21365 0.94730 0.96717 1.03959 1.18427 0.92574 0.93166 0.88954 1.19695 1.01438 0.91907 1.32724 0.89298 1.26108 0.94303 1.02092 0.92493 1.69757 1.16305 1.32513 1.21483 0.86205 0.80060 0.79594 0.80127 1.18481 1.20038 1.18552 0.93290 0.91456 0.93128 0.86171 0.86714 0.87358 0.91174 0.91866 0.92352 0.78168 0.85363 0.88093 0.85327 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.58 36.01 0.34 -1.11 16 2 C 0.01 0.20 6.86 -81.81 -0.56 -0.36 16 3 N -0.45 -10.82 9.30 -5.39 -0.05 -10.87 16 4 C -0.01 -0.13 6.74 -82.75 -0.56 -0.69 16 5 C 0.03 0.52 5.88 -104.89 -0.62 -0.10 16 6 C -0.13 -2.38 9.42 -39.18 -0.37 -2.75 16 7 C -0.11 -1.70 10.03 -39.64 -0.40 -2.09 16 8 C -0.14 -2.06 9.33 -39.47 -0.37 -2.43 16 9 C -0.12 -1.84 5.00 -104.68 -0.52 -2.37 16 10 C 0.14 1.90 3.83 -27.88 -0.11 1.79 16 11 H 0.11 1.41 8.05 -51.93 -0.42 1.00 16 12 C -0.18 -1.94 9.52 37.16 0.35 -1.59 16 13 O -0.56 -7.15 13.13 -35.23 -0.46 -7.61 16 14 C -0.10 -1.93 9.20 -39.18 -0.36 -2.29 16 15 C -0.12 -2.90 9.38 -39.55 -0.37 -3.27 16 16 C -0.14 -3.57 8.73 -39.01 -0.34 -3.91 16 17 C 0.07 1.87 5.59 -106.64 -0.60 1.27 16 18 C -0.43 -10.39 8.16 -37.85 -0.31 -10.70 16 19 H 0.09 2.02 6.84 -52.49 -0.36 1.66 16 20 C 0.07 1.62 5.22 -17.33 -0.09 1.53 16 21 N -0.78 -18.54 10.83 55.55 0.60 -17.93 16 22 Si 0.92 17.02 29.58 -169.99 -5.03 11.99 16 23 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 24 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 25 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.33 6.76 -51.93 -0.35 0.98 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.12 2.00 6.15 -52.48 -0.32 1.67 16 30 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.11 1.19 6.60 -52.49 -0.35 0.84 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.37 3.40 7.38 45.56 0.34 3.74 16 36 H 0.13 2.45 7.52 -52.49 -0.39 2.05 16 37 H 0.10 2.06 6.15 -52.48 -0.32 1.74 16 38 H 0.13 3.23 6.17 -52.49 -0.32 2.91 16 39 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -27.75 325.30 -9.08 -36.83 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.17 Total: 11.77 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -4.87 Total: -29.07 kcal Atomic # 7 Polarization: -29.36 SS G_CDS: 0.55 Total: -28.80 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.46 Total: -7.61 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.75 -9.08 -36.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242550114.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.646 kcal (2) G-P(sol) polarization free energy of solvation -27.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds