Wall clock time and date at job start Tue Mar 31 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 O 1.42905 * 109.46728 * 120.00053 * 2 1 3 5 5 C 1.50697 * 109.46961 * 239.99559 * 2 1 3 6 6 C 1.38327 * 119.87454 * 29.73322 * 5 2 1 7 7 C 1.38006 * 120.12560 * 179.72302 * 6 5 2 8 8 C 1.39391 * 119.87226 * 0.54509 * 7 6 5 9 9 C 1.48310 * 120.12555 * 179.70725 * 8 7 6 10 10 C 1.39907 * 119.60878 * 0.02562 * 9 8 7 11 11 C 1.38682 * 119.46385 * 180.02562 * 10 9 8 12 12 C 1.38297 * 118.69250 * 359.97438 * 11 10 9 13 13 C 1.40684 * 119.18353 * 359.97438 * 12 11 10 14 14 C 1.41379 * 119.76657 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99857 * 0.02562 * 14 13 12 16 16 C 1.40015 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.30743 * 119.99531 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00256 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47037 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.47166 * 119.99887 * 18 16 14 21 21 H 1.48503 * 109.47088 * 239.99978 * 18 16 14 22 22 N 1.32215 * 119.60913 * 179.75322 * 9 8 7 23 23 C 1.39388 * 119.75120 * 359.72816 * 8 7 6 24 24 C 1.38009 * 119.86892 * 359.97438 * 23 8 7 25 25 H 1.09001 * 109.47362 * 300.00732 * 1 2 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 1 2 3 27 27 H 1.09000 * 109.47486 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47153 * 299.99641 * 3 2 1 30 30 H 1.08996 * 109.46952 * 59.99813 * 3 2 1 31 31 H 0.96696 * 114.00036 * 179.97438 * 4 2 1 32 32 H 1.07999 * 119.94113 * 359.97438 * 6 5 2 33 33 H 1.08003 * 120.06391 * 180.27369 * 7 6 5 34 34 H 1.08001 * 120.26655 * 359.97438 * 10 9 8 35 35 H 1.07997 * 120.65669 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.40477 * 179.97438 * 12 11 10 37 37 H 0.97008 * 120.00147 * 179.97438 * 17 16 14 38 38 H 1.07994 * 120.06493 * 180.02562 * 23 8 7 39 39 H 1.07992 * 119.93437 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.0323 -0.7105 -1.2304 6 6 1.2799 -0.6938 -2.3911 7 6 1.7376 -1.3379 -3.5225 8 6 2.9552 -2.0158 -3.4909 9 6 3.4494 -2.7153 -4.7016 10 6 2.6867 -2.6900 -5.8743 11 6 3.1514 -3.3456 -7.0045 12 6 4.3633 -4.0083 -6.9366 13 6 5.0847 -3.9968 -5.7288 14 6 6.3247 -4.6707 -5.6454 15 1 6.7152 -5.1916 -6.5071 16 6 7.0465 -4.6629 -4.4457 17 7 6.5739 -4.0319 -3.4026 18 14 8.6852 -5.5527 -4.3357 19 1 8.9955 -6.1821 -5.6444 20 1 9.7536 -4.5814 -3.9884 21 1 8.6096 -6.6014 -3.2870 22 7 4.6080 -3.3510 -4.6617 23 6 3.7064 -2.0340 -2.3169 24 6 3.2416 -1.3812 -1.1933 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 2.9702 -0.7122 1.2328 32 1 0.3345 -0.1723 -2.4131 33 1 1.1515 -1.3205 -4.4295 34 1 1.7433 -2.1647 -5.8988 35 1 2.5786 -3.3381 -7.9201 36 1 4.7511 -4.5283 -7.8001 37 1 7.0738 -4.0267 -2.5713 38 1 4.6506 -2.5573 -2.2868 39 1 3.8225 -1.3950 -0.2830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242622807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:09 Heat of formation + Delta-G solvation = -1.384314 kcal Electronic energy + Delta-G solvation = -21334.105549 eV Core-core repulsion = 18205.968568 eV Total energy + Delta-G solvation = -3128.136980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.66963 -38.28225 -36.75052 -33.74961 -32.84905 -31.13557 -30.79323 -30.00567 -28.30092 -27.37831 -25.69551 -23.39628 -22.33337 -21.14824 -20.72044 -19.62059 -17.72941 -17.35746 -15.92270 -15.23624 -15.12766 -14.79520 -14.69654 -14.16032 -13.65267 -13.48951 -13.26402 -13.17793 -12.91588 -12.56357 -12.40393 -12.24180 -12.00678 -11.76149 -11.72532 -11.36715 -11.22678 -11.07079 -10.82487 -10.72844 -10.58335 -10.32796 -9.98376 -9.85184 -9.49800 -8.76732 -8.41310 -8.08679 -7.67170 -7.22029 -6.48035 -4.57977 1.49018 1.95845 2.75962 3.02018 3.06329 3.10245 3.16525 3.90476 4.17196 4.38282 4.73550 4.79120 4.92234 5.01941 5.28712 5.36737 5.47180 5.55605 5.71223 5.72191 5.83891 5.88321 5.93230 6.00745 6.03681 6.11522 6.26442 6.40624 6.43447 6.55300 6.69755 6.75697 6.86305 6.95699 7.12307 7.26481 7.31426 7.53203 7.57704 7.65425 7.68147 7.97379 8.17355 8.60609 8.85733 9.99207 10.24652 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.004604 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.604297 B = 6080.683859 C = 7358.733945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.170 3.830 3 C -0.172 4.172 4 O -0.558 6.558 5 C -0.123 4.123 6 C -0.125 4.125 7 C -0.110 4.110 8 C -0.017 4.017 9 C 0.173 3.827 10 C -0.300 4.300 11 C -0.060 4.060 12 C -0.271 4.271 13 C 0.256 3.744 14 C -0.431 4.431 15 H 0.084 0.916 16 C 0.071 3.929 17 N -0.719 5.719 18 Si 0.908 3.092 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.273 1.273 22 N -0.467 5.467 23 C -0.076 4.076 24 C -0.126 4.126 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.375 0.625 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.272 0.728 38 H 0.155 0.845 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 7.324 5.894 11.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.130 3.870 3 C -0.230 4.230 4 O -0.365 6.365 5 C -0.123 4.123 6 C -0.143 4.143 7 C -0.129 4.129 8 C -0.018 4.018 9 C 0.029 3.971 10 C -0.323 4.323 11 C -0.084 4.084 12 C -0.294 4.294 13 C 0.131 3.869 14 C -0.462 4.462 15 H 0.103 0.897 16 C -0.154 4.154 17 N -0.340 5.340 18 Si 0.732 3.268 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.198 1.198 22 N -0.180 5.180 23 C -0.094 4.094 24 C -0.144 4.144 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.172 0.828 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.456 7.272 6.965 11.962 hybrid contribution 0.819 -0.343 -1.018 1.351 sum -5.637 6.930 5.947 10.732 Atomic orbital electron populations 1.21804 0.92479 1.03021 1.02077 1.19952 0.94514 0.89998 0.82552 1.22470 1.01816 0.96168 1.02506 1.86540 1.26856 1.79725 1.43390 1.20346 0.95969 1.00481 0.95552 1.20772 0.99569 1.01359 0.92620 1.21251 0.95928 0.97602 0.98100 1.18898 0.93544 0.96041 0.93273 1.19762 0.92128 0.94622 0.90629 1.21217 1.02980 1.12770 0.95366 1.20791 0.95345 0.95820 0.96459 1.21805 0.98409 1.09526 0.99691 1.18528 0.92556 0.89420 0.86439 1.19639 1.01536 1.27519 0.97555 0.89744 1.26030 0.99319 0.94665 0.95358 1.70077 1.34852 1.28240 1.00879 0.86271 0.81381 0.79685 0.79490 1.18437 1.19823 1.19801 1.68710 1.10121 1.10282 1.28864 1.21721 1.00707 0.96116 0.90886 1.20783 0.95766 0.99376 0.98431 0.92051 0.90885 0.91635 0.92143 0.91419 0.91891 0.77631 0.86392 0.85946 0.88429 0.88454 0.88231 0.91709 0.82772 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.14 37.16 0.30 -1.21 16 2 C 0.17 2.12 1.26 -91.78 -0.12 2.00 16 3 C -0.17 -1.82 8.80 37.16 0.33 -1.49 16 4 O -0.56 -7.23 12.71 -35.23 -0.45 -7.68 16 5 C -0.12 -1.85 4.85 -104.55 -0.51 -2.35 16 6 C -0.13 -1.90 9.12 -39.63 -0.36 -2.26 16 7 C -0.11 -1.95 9.42 -39.24 -0.37 -2.31 16 8 C -0.02 -0.35 5.88 -104.90 -0.62 -0.97 16 9 C 0.17 4.22 6.74 -82.93 -0.56 3.66 16 10 C -0.30 -6.77 9.48 -38.79 -0.37 -7.13 16 11 C -0.06 -1.34 10.15 -39.40 -0.40 -1.74 16 12 C -0.27 -6.63 9.83 -38.64 -0.38 -7.01 16 13 C 0.26 6.93 6.55 -85.01 -0.56 6.38 16 14 C -0.43 -11.34 9.14 -37.72 -0.34 -11.68 16 15 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 16 C 0.07 1.76 5.50 -17.35 -0.10 1.67 16 17 N -0.72 -18.32 11.11 55.55 0.62 -17.70 16 18 Si 0.91 18.22 29.56 -169.99 -5.02 13.20 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 N -0.47 -12.60 6.92 -7.68 -0.05 -12.65 16 23 C -0.08 -1.54 9.57 -39.24 -0.38 -1.92 16 24 C -0.13 -2.09 9.30 -39.63 -0.37 -2.46 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.69 6.50 -51.93 -0.34 0.35 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.38 3.83 7.31 45.56 0.33 4.16 16 32 H 0.12 1.45 6.14 -52.49 -0.32 1.12 16 33 H 0.12 1.99 6.17 -52.48 -0.32 1.66 16 34 H 0.10 1.91 6.17 -52.49 -0.32 1.59 16 35 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.27 6.24 8.29 -40.82 -0.34 5.90 16 38 H 0.15 3.50 7.18 -52.49 -0.38 3.12 16 39 H 0.11 1.57 6.47 -52.49 -0.34 1.23 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -29.33 324.25 -9.01 -38.34 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -4.20 Total: 10.46 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -4.79 Total: -28.85 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.56 Total: -30.35 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.45 Total: -7.68 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.33 -9.01 -38.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242622807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.955 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds