Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47179 * 2 1 4 4 O 1.42895 * 109.47133 * 239.99989 * 2 1 3 5 5 C 1.50703 * 109.46846 * 119.99906 * 2 1 3 6 6 C 1.38411 * 119.84197 * 149.99891 * 5 2 1 7 7 C 1.37916 * 120.14658 * 180.02562 * 6 5 2 8 8 C 1.39674 * 119.84763 * 0.02562 * 7 6 5 9 9 C 1.47828 * 120.14877 * 179.97438 * 8 7 6 10 10 N 1.32578 * 119.99255 * 316.14164 * 9 8 7 11 11 C 1.31738 * 121.71850 * 179.97438 * 10 9 8 12 12 C 1.38866 * 121.50881 * 0.02562 * 11 10 9 13 13 C 1.36875 * 119.79879 * 359.97438 * 12 11 10 14 14 C 1.41131 * 118.39682 * 0.27535 * 13 12 11 15 15 C 1.40882 * 120.72137 * 179.71959 * 14 13 12 16 16 H 1.08001 * 120.00129 * 151.61536 * 15 14 13 17 17 C 1.40081 * 120.00079 * 331.61347 * 15 14 13 18 18 N 1.30777 * 119.99878 * 348.29740 * 17 15 14 19 19 Si 1.86800 * 119.99865 * 168.29059 * 17 15 14 20 20 H 1.48502 * 109.46645 * 90.00494 * 19 17 15 21 21 H 1.48505 * 109.46820 * 210.00217 * 19 17 15 22 22 H 1.48498 * 109.47261 * 330.00660 * 19 17 15 23 23 C 1.39669 * 119.70331 * 0.25232 * 8 7 6 24 24 C 1.37922 * 119.83884 * 359.48993 * 23 8 7 25 25 H 1.09004 * 109.47001 * 299.99937 * 1 2 3 26 26 H 1.08995 * 109.47267 * 60.00132 * 1 2 3 27 27 H 1.08998 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46937 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46913 * 300.00084 * 3 2 1 30 30 H 1.09004 * 109.47103 * 60.00125 * 3 2 1 31 31 H 0.96702 * 114.00416 * 300.00187 * 4 2 1 32 32 H 1.07995 * 119.92583 * 0.04424 * 6 5 2 33 33 H 1.08004 * 120.07528 * 180.02562 * 7 6 5 34 34 H 1.08008 * 119.24276 * 180.02562 * 11 10 9 35 35 H 1.08003 * 120.09616 * 179.97438 * 12 11 10 36 36 H 1.08001 * 120.80390 * 179.97438 * 13 12 11 37 37 H 0.96994 * 119.99509 * 179.97438 * 18 17 15 38 38 H 1.07992 * 120.08190 * 179.72339 * 23 8 7 39 39 H 1.08003 * 119.92483 * 180.25153 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0323 -0.7104 1.2305 6 6 3.2421 -1.3817 1.1926 7 6 3.7075 -2.0344 2.3149 8 6 2.9547 -2.0173 3.4913 9 6 3.4469 -2.7152 4.6980 10 7 3.9688 -3.9295 4.5947 11 6 4.4181 -4.5821 5.6472 12 6 4.3669 -4.0294 6.9201 13 6 3.8402 -2.7786 7.0979 14 6 3.3558 -2.0873 5.9669 15 6 2.7984 -0.7998 6.0945 16 1 2.8514 -0.1042 5.2700 17 6 2.1753 -0.4217 7.2908 18 7 1.9058 -1.3217 8.2005 19 14 1.7297 1.3681 7.5866 20 1 0.3578 1.6267 7.0803 21 1 1.7828 1.6573 9.0423 22 1 2.6940 2.2429 6.8726 23 6 1.7320 -1.3429 3.5208 24 6 1.2811 -0.6899 2.3927 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.7210 -1.5952 -1.2329 32 1 3.8231 -1.3942 0.2824 33 1 4.6519 -2.5575 2.2842 34 1 4.8359 -5.5696 5.5170 35 1 4.7414 -4.5849 7.7672 36 1 3.7920 -2.3334 8.0807 37 1 1.4747 -1.0598 9.0290 38 1 1.1428 -1.3295 4.4257 39 1 0.3377 -0.1645 2.4151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242623116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = -13.539576 kcal Electronic energy + Delta-G solvation = -21656.811340 eV Core-core repulsion = 18528.147268 eV Total energy + Delta-G solvation = -3128.664072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.51790 -38.41133 -36.63014 -34.22274 -32.78756 -31.10444 -30.76098 -30.01540 -28.16505 -27.28088 -25.72304 -23.26336 -22.01967 -21.24928 -20.80259 -19.60968 -17.53449 -17.15881 -16.19770 -15.57313 -15.06084 -14.82546 -14.49006 -14.12542 -13.87407 -13.78171 -13.10368 -12.94432 -12.54885 -12.50695 -12.25839 -12.13105 -12.07374 -11.67907 -11.57333 -11.54325 -11.48535 -11.22022 -11.11757 -10.73233 -10.63100 -10.25169 -9.95835 -9.72252 -9.48452 -8.57057 -8.26624 -8.12540 -8.03562 -7.35929 -6.93788 -4.58506 1.74971 2.13221 2.58826 2.91320 2.95049 3.00072 3.11346 3.76177 4.30697 4.41593 4.52512 4.88357 5.03305 5.19244 5.42726 5.56071 5.56876 5.68399 5.70611 5.81346 5.90719 5.93478 6.07127 6.16635 6.21654 6.26420 6.29634 6.37992 6.61834 6.66904 6.75963 6.81938 6.96081 6.98832 7.12001 7.23639 7.46325 7.60718 7.68313 7.75847 7.81216 7.85580 8.31910 8.53912 8.60925 9.51395 9.94184 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.005936 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.062832 B = 4716.033465 C = 6194.785023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.173 3.827 3 C -0.133 4.133 4 O -0.560 6.560 5 C -0.144 4.144 6 C -0.111 4.111 7 C -0.112 4.112 8 C 0.029 3.971 9 C 0.010 3.990 10 N -0.453 5.453 11 C -0.032 4.032 12 C -0.150 4.150 13 C -0.128 4.128 14 C 0.086 3.914 15 C -0.439 4.439 16 H 0.089 0.911 17 C 0.073 3.927 18 N -0.789 5.789 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.096 4.096 24 C -0.121 4.121 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.376 0.624 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.285 0.715 38 H 0.134 0.866 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 3.730 -8.134 9.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.133 3.867 3 C -0.190 4.190 4 O -0.366 6.366 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.131 4.131 8 C 0.028 3.972 9 C -0.128 4.128 10 N -0.160 5.160 11 C -0.193 4.193 12 C -0.170 4.170 13 C -0.154 4.154 14 C 0.081 3.919 15 C -0.468 4.468 16 H 0.107 0.893 17 C -0.146 4.146 18 N -0.414 5.414 19 Si 0.734 3.266 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.115 4.115 24 C -0.139 4.139 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.223 0.777 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.117 0.883 36 H 0.145 0.855 37 H 0.096 0.904 38 H 0.151 0.849 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.455 3.900 -8.802 9.935 hybrid contribution -0.525 0.445 1.509 1.659 sum -2.980 4.345 -7.293 8.997 Atomic orbital electron populations 1.22528 0.95734 1.02591 1.02468 1.19895 0.92052 0.92184 0.82552 1.21730 1.02138 0.93160 1.01951 1.86486 1.77486 1.28998 1.43625 1.20276 0.96621 1.01926 0.95622 1.20724 0.95652 0.98436 0.98112 1.21242 0.99904 0.99501 0.92439 1.18494 0.92816 0.94266 0.91627 1.19561 1.08991 0.92127 0.92095 1.67033 1.07504 1.07880 1.33621 1.21675 1.08768 1.00079 0.88738 1.21446 1.01296 0.97025 0.97256 1.21437 0.99206 0.94830 0.99904 1.18349 0.89384 0.93429 0.90734 1.19618 1.30100 0.98130 0.98979 0.89314 1.26010 0.93903 0.99723 0.94944 1.69742 1.29491 1.35175 1.06963 0.86253 0.79992 0.81886 0.78510 1.19074 1.19911 1.18146 1.21452 0.95602 0.96389 0.98007 1.20879 0.99509 1.00827 0.92678 0.91165 0.92115 0.92152 0.91852 0.92239 0.91081 0.77688 0.86508 0.86557 0.86136 0.88282 0.85471 0.90407 0.84856 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.11 37.16 0.30 -1.66 16 2 C 0.17 2.27 1.23 -91.77 -0.11 2.16 16 3 C -0.13 -1.64 8.83 37.16 0.33 -1.32 16 4 O -0.56 -7.23 11.95 -35.23 -0.42 -7.65 16 5 C -0.14 -2.28 4.82 -104.50 -0.50 -2.78 16 6 C -0.11 -1.89 9.33 -39.64 -0.37 -2.26 16 7 C -0.11 -2.22 9.67 -39.16 -0.38 -2.60 16 8 C 0.03 0.64 5.25 -104.90 -0.55 0.09 16 9 C 0.01 0.25 6.43 -82.23 -0.53 -0.28 16 10 N -0.45 -11.10 10.15 -9.17 -0.09 -11.20 16 11 C -0.03 -0.72 11.16 -17.36 -0.19 -0.91 16 12 C -0.15 -3.40 10.03 -39.84 -0.40 -3.80 16 13 C -0.13 -3.18 8.72 -38.98 -0.34 -3.52 16 14 C 0.09 2.19 5.54 -106.41 -0.59 1.60 16 15 C -0.44 -10.77 6.74 -37.89 -0.26 -11.02 16 16 H 0.09 2.14 6.46 -52.49 -0.34 1.80 16 17 C 0.07 1.70 5.26 -17.31 -0.09 1.61 16 18 N -0.79 -18.93 10.91 55.55 0.61 -18.32 16 19 Si 0.91 17.50 29.58 -169.99 -5.03 12.47 16 20 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 23 C -0.10 -1.95 7.84 -39.16 -0.31 -2.25 16 24 C -0.12 -2.05 9.12 -39.64 -0.36 -2.41 16 25 H 0.07 0.76 6.50 -51.93 -0.34 0.42 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.38 3.83 9.04 45.56 0.41 4.24 16 32 H 0.12 1.80 7.47 -52.49 -0.39 1.41 16 33 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 34 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 35 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 36 H 0.13 3.19 6.33 -52.49 -0.33 2.85 16 37 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 38 H 0.13 2.88 6.76 -52.49 -0.35 2.52 16 39 H 0.12 1.68 6.14 -52.48 -0.32 1.35 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -27.27 323.87 -8.59 -35.86 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -4.18 Total: 13.32 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -4.35 Total: -29.37 kcal Atomic # 7 Polarization: -30.03 SS G_CDS: 0.51 Total: -29.52 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.42 Total: -7.65 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.27 -8.59 -35.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242623116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.321 kcal (2) G-P(sol) polarization free energy of solvation -27.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds