Wall clock time and date at job start Tue Mar 31 2020 06:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46896 * 2 1 4 4 O 1.42899 * 109.46632 * 240.00178 * 2 1 3 5 5 C 1.50700 * 109.46912 * 120.00100 * 2 1 3 6 6 C 1.38390 * 119.84933 * 150.00109 * 5 2 1 7 7 C 1.37937 * 120.14236 * 180.02562 * 6 5 2 8 8 C 1.39600 * 119.85294 * 359.97438 * 7 6 5 9 9 C 1.47967 * 120.14321 * 179.97438 * 8 7 6 10 10 C 1.39900 * 119.45076 * 180.02562 * 9 8 7 11 11 C 1.36610 * 119.46550 * 180.02562 * 10 9 8 12 12 C 1.41294 * 118.41562 * 0.26689 * 11 10 9 13 13 C 1.41058 * 120.55616 * 179.72676 * 12 11 10 14 14 H 1.07996 * 120.00268 * 203.69289 * 13 12 11 15 15 C 1.40024 * 119.99464 * 23.69422 * 13 12 11 16 16 N 1.30781 * 120.00405 * 17.63075 * 15 13 12 17 17 Si 1.86806 * 119.99704 * 197.62655 * 15 13 12 18 18 H 1.48499 * 109.47093 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46741 * 120.00081 * 17 15 13 20 20 H 1.48488 * 109.47181 * 240.00023 * 17 15 13 21 21 C 1.40955 * 118.89379 * 359.46389 * 12 11 10 22 22 N 1.31265 * 120.39910 * 0.55246 * 21 12 11 23 23 C 1.39603 * 119.71416 * 0.25993 * 8 7 6 24 24 C 1.37938 * 119.84905 * 359.49005 * 23 8 7 25 25 H 1.09007 * 109.46856 * 299.99918 * 1 2 3 26 26 H 1.08997 * 109.47540 * 59.99693 * 1 2 3 27 27 H 1.08995 * 109.47406 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46827 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47278 * 299.99972 * 3 2 1 30 30 H 1.08999 * 109.47550 * 60.00396 * 3 2 1 31 31 H 0.96699 * 114.00032 * 299.99730 * 4 2 1 32 32 H 1.08003 * 119.92866 * 359.97438 * 6 5 2 33 33 H 1.08004 * 120.06824 * 180.02562 * 7 6 5 34 34 H 1.07990 * 120.26464 * 359.97438 * 10 9 8 35 35 H 1.07995 * 120.78790 * 180.02562 * 11 10 9 36 36 H 0.97000 * 120.00675 * 179.97438 * 16 15 13 37 37 H 1.08000 * 119.80263 * 180.24537 * 21 12 11 38 38 H 1.07999 * 120.07876 * 179.72387 * 23 8 7 39 39 H 1.08002 * 119.92758 * 180.23677 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2305 6 6 3.2420 -1.3816 1.1927 7 6 3.7072 -2.0344 2.3153 8 6 2.9552 -2.0164 3.4913 9 6 3.4479 -2.7149 4.6991 10 6 2.6823 -2.6880 5.8697 11 6 3.1371 -3.3324 6.9851 12 6 4.3786 -4.0033 6.9147 13 6 4.8938 -4.6784 8.0411 14 1 5.9560 -4.8530 8.1268 15 6 4.0277 -5.1221 9.0479 16 7 2.7466 -5.2300 8.8079 17 14 4.7022 -5.5601 10.7340 18 1 6.1726 -5.3528 10.7480 19 1 4.0706 -4.6924 11.7604 20 1 4.3996 -6.9825 11.0339 21 6 5.0911 -3.9916 5.6986 22 7 4.6117 -3.3577 4.6539 23 6 1.7335 -1.3416 3.5211 24 6 1.2821 -0.6885 2.3931 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7209 -1.5952 -1.2329 32 1 3.8226 -1.3951 0.2822 33 1 4.6516 -2.5575 2.2846 34 1 1.7397 -2.1614 5.8915 35 1 2.5633 -3.3257 7.8999 36 1 2.1467 -5.5377 9.5053 37 1 6.0396 -4.5031 5.6272 38 1 1.1448 -1.3277 4.4265 39 1 0.3390 -0.1628 2.4159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242623314.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:14 Heat of formation + Delta-G solvation = -15.559348 kcal Electronic energy + Delta-G solvation = -20846.547888 eV Core-core repulsion = 17717.796232 eV Total energy + Delta-G solvation = -3128.751656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.63663 -38.43880 -36.80938 -34.34170 -32.79435 -31.19130 -30.86860 -30.08651 -28.67170 -27.39462 -25.56834 -23.13147 -22.56213 -21.16293 -20.78478 -19.78476 -17.59560 -17.39391 -16.31075 -15.62357 -15.08385 -14.97355 -14.64834 -14.33800 -13.70338 -13.66429 -13.30813 -13.01718 -12.90390 -12.52594 -12.39517 -12.24273 -12.21257 -11.78627 -11.73871 -11.68805 -11.48024 -11.37776 -11.09140 -10.78842 -10.70098 -10.40958 -9.97801 -9.88412 -9.58902 -8.65552 -8.46240 -8.40131 -8.13594 -7.33773 -7.03943 -4.61605 1.48788 1.92304 2.60538 2.88591 2.91752 2.96572 3.10381 3.69008 4.15133 4.21443 4.58773 4.75679 4.91702 5.07294 5.28324 5.42697 5.46889 5.56464 5.59202 5.69027 5.77364 5.81968 5.92811 5.98615 6.01711 6.14887 6.18374 6.38557 6.49393 6.58072 6.66571 6.74254 6.81954 6.91799 6.99413 7.11585 7.28366 7.44676 7.64980 7.66180 7.72269 7.82648 8.25632 8.44785 8.55017 9.49983 9.81258 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.046713 B = 0.003094 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.263059 B = 9048.147747 C = 9395.975023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.174 3.826 3 C -0.133 4.133 4 O -0.559 6.559 5 C -0.154 4.154 6 C -0.101 4.101 7 C -0.116 4.116 8 C 0.026 3.974 9 C -0.013 4.013 10 C -0.120 4.120 11 C -0.146 4.146 12 C 0.069 3.931 13 C -0.432 4.432 14 H 0.088 0.912 15 C 0.071 3.929 16 N -0.774 5.774 17 Si 0.916 3.084 18 H -0.256 1.256 19 H -0.269 1.269 20 H -0.271 1.271 21 C -0.017 4.017 22 N -0.447 5.447 23 C -0.137 4.137 24 C -0.108 4.108 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.376 0.624 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.287 0.713 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.591 6.808 -8.501 11.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.134 3.866 3 C -0.190 4.190 4 O -0.366 6.366 5 C -0.155 4.155 6 C -0.119 4.119 7 C -0.134 4.134 8 C 0.025 3.975 9 C -0.146 4.146 10 C -0.140 4.140 11 C -0.171 4.171 12 C 0.064 3.936 13 C -0.460 4.460 14 H 0.106 0.894 15 C -0.149 4.149 16 N -0.397 5.397 17 Si 0.739 3.261 18 H -0.180 1.180 19 H -0.194 1.194 20 H -0.196 1.196 21 C -0.182 4.182 22 N -0.154 5.154 23 C -0.156 4.156 24 C -0.126 4.126 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.224 0.776 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.098 0.902 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.103 7.324 -9.270 12.506 hybrid contribution -0.646 -0.914 1.899 2.205 sum -4.749 6.411 -7.371 10.861 Atomic orbital electron populations 1.22532 0.95727 1.02599 1.02467 1.19882 0.92036 0.92180 0.82540 1.21728 1.02164 0.93145 1.01937 1.86494 1.77465 1.29057 1.43539 1.20260 0.96827 1.02675 0.95745 1.20836 0.95354 0.97511 0.98246 1.21270 1.00495 0.99779 0.91899 1.18747 0.92675 0.93613 0.92452 1.18804 0.94774 1.08200 0.92842 1.21313 0.98752 0.99804 0.94179 1.21329 0.98578 0.99051 0.98093 1.18632 0.92259 0.89857 0.92862 1.19736 0.95597 1.29293 1.01384 0.89378 1.26109 0.94472 0.93193 1.01174 1.69784 1.04477 1.30764 1.34707 0.86120 0.80772 0.78856 0.80337 1.17971 1.19371 1.19595 1.22463 1.01831 1.05146 0.88799 1.66914 1.11514 1.05541 1.31423 1.21166 0.96499 0.99663 0.98320 1.20806 0.99198 0.99940 0.92624 0.91279 0.92014 0.92139 0.91833 0.92158 0.91186 0.77610 0.86311 0.85412 0.88078 0.85531 0.90176 0.85284 0.86217 0.86631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.12 37.16 0.30 -1.43 16 2 C 0.17 2.06 1.23 -91.77 -0.11 1.95 16 3 C -0.13 -1.47 8.82 37.15 0.33 -1.14 16 4 O -0.56 -6.70 11.95 -35.23 -0.42 -7.12 16 5 C -0.15 -2.22 4.82 -104.51 -0.50 -2.72 16 6 C -0.10 -1.61 9.33 -39.64 -0.37 -1.98 16 7 C -0.12 -2.16 9.57 -39.18 -0.38 -2.54 16 8 C 0.03 0.53 5.88 -104.89 -0.62 -0.09 16 9 C -0.01 -0.30 6.74 -82.74 -0.56 -0.85 16 10 C -0.12 -2.78 9.38 -39.55 -0.37 -3.15 16 11 C -0.15 -3.63 8.74 -39.01 -0.34 -3.97 16 12 C 0.07 1.75 5.59 -106.64 -0.60 1.15 16 13 C -0.43 -10.57 9.07 -37.84 -0.34 -10.91 16 14 H 0.09 2.04 7.91 -52.49 -0.41 1.62 16 15 C 0.07 1.65 5.17 -17.33 -0.09 1.56 16 16 N -0.77 -18.45 10.92 55.55 0.61 -17.85 16 17 Si 0.92 17.03 29.60 -169.99 -5.03 12.00 16 18 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 21 C -0.02 -0.41 10.97 -16.77 -0.18 -0.60 16 22 N -0.45 -10.91 9.39 -9.10 -0.09 -11.00 16 23 C -0.14 -2.40 9.42 -39.18 -0.37 -2.77 16 24 C -0.11 -1.59 9.12 -39.64 -0.36 -1.95 16 25 H 0.07 0.63 6.50 -51.92 -0.34 0.30 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.38 3.49 9.04 45.56 0.41 3.90 16 32 H 0.12 1.72 7.47 -52.48 -0.39 1.33 16 33 H 0.13 2.47 7.52 -52.48 -0.39 2.07 16 34 H 0.10 2.05 6.15 -52.49 -0.32 1.73 16 35 H 0.13 3.17 6.19 -52.49 -0.32 2.85 16 36 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 37 H 0.13 2.90 8.06 -52.49 -0.42 2.48 16 38 H 0.12 1.97 6.15 -52.49 -0.32 1.65 16 39 H 0.12 1.40 6.15 -52.49 -0.32 1.08 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -27.37 325.28 -8.68 -36.05 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -4.09 Total: 12.45 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -4.56 Total: -29.44 kcal Atomic # 7 Polarization: -29.37 SS G_CDS: 0.52 Total: -28.84 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.42 Total: -7.12 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.37 -8.68 -36.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242623314.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.492 kcal (2) G-P(sol) polarization free energy of solvation -27.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds