Wall clock time and date at job start Tue Mar 31 2020 06:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47030 * 2 1 4 4 O 1.42896 * 109.46794 * 240.00138 * 2 1 3 5 5 C 1.50697 * 109.46894 * 120.00025 * 2 1 3 6 6 C 1.38408 * 119.84184 * 150.00324 * 5 2 1 7 7 C 1.37914 * 120.15074 * 180.02562 * 6 5 2 8 8 C 1.39680 * 119.84770 * 359.97438 * 7 6 5 9 9 C 1.47819 * 120.15604 * 180.02562 * 8 7 6 10 10 C 1.39684 * 120.64682 * 309.97477 * 9 8 7 11 11 C 1.38394 * 118.47319 * 180.02562 * 10 9 8 12 12 C 1.39054 * 119.72705 * 359.97438 * 11 10 9 13 13 N 1.31284 * 121.33873 * 0.02577 * 12 11 10 14 14 C 1.33693 * 121.63692 * 359.97438 * 13 12 11 15 15 C 1.40820 * 119.94040 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00273 * 179.97438 * 15 14 13 17 17 C 1.40151 * 119.99825 * 0.02562 * 15 14 13 18 18 N 1.30698 * 120.00211 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47144 * 89.99890 * 19 17 15 21 21 H 1.48500 * 109.47643 * 209.99982 * 19 17 15 22 22 H 1.48502 * 109.46991 * 330.00332 * 19 17 15 23 23 C 1.39688 * 119.69584 * 0.27426 * 8 7 6 24 24 C 1.37919 * 119.84323 * 359.47227 * 23 8 7 25 25 H 1.09002 * 109.46834 * 300.00080 * 1 2 3 26 26 H 1.09000 * 109.46995 * 59.99589 * 1 2 3 27 27 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47089 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47567 * 300.00061 * 3 2 1 30 30 H 1.09002 * 109.47377 * 60.00252 * 3 2 1 31 31 H 0.96699 * 114.00106 * 180.02562 * 4 2 1 32 32 H 1.07994 * 119.92817 * 359.96919 * 6 5 2 33 33 H 1.08001 * 120.07498 * 179.97438 * 7 6 5 34 34 H 1.07995 * 120.76107 * 0.04170 * 10 9 8 35 35 H 1.07996 * 120.13647 * 180.02562 * 11 10 9 36 36 H 1.08007 * 119.33144 * 180.29683 * 12 11 10 37 37 H 0.96997 * 120.00557 * 179.97438 * 18 17 15 38 38 H 1.08004 * 120.08032 * 179.72985 * 23 8 7 39 39 H 1.08004 * 119.92444 * 180.23319 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2304 6 6 3.2422 -1.3816 1.1926 7 6 3.7077 -2.0343 2.3148 8 6 2.9554 -2.0165 3.4915 9 6 3.4481 -2.7134 4.6985 10 6 3.8817 -4.0393 4.6280 11 6 4.3336 -4.6482 5.7857 12 6 4.3466 -3.9355 6.9797 13 7 3.9369 -2.6895 7.0356 14 6 3.4898 -2.0489 5.9506 15 6 3.0584 -0.7122 6.0515 16 1 2.6974 -0.1937 5.1757 17 6 3.0985 -0.0545 7.2884 18 7 3.5358 -0.6818 8.3484 19 14 2.5269 1.7189 7.4223 20 1 1.0753 1.7489 7.7338 21 1 3.2798 2.4014 8.5052 22 1 2.7712 2.4162 6.1341 23 6 1.7328 -1.3415 3.5211 24 6 1.2818 -0.6886 2.3931 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 2.9703 -0.7122 -1.2328 32 1 3.8226 -1.3950 0.2820 33 1 4.6517 -2.5581 2.2837 34 1 3.8650 -4.5769 3.6914 35 1 4.6754 -5.6723 5.7618 36 1 4.7050 -4.4154 7.8784 37 1 3.5640 -0.2265 9.2044 38 1 1.1439 -1.3275 4.4264 39 1 0.3385 -0.1631 2.4156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242626663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:52 Heat of formation + Delta-G solvation = -2.459332 kcal Electronic energy + Delta-G solvation = -21629.887514 eV Core-core repulsion = 18501.703917 eV Total energy + Delta-G solvation = -3128.183597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.60843 -38.28567 -36.69133 -33.76819 -32.96049 -31.34333 -30.61171 -29.96854 -28.02586 -27.32348 -25.77725 -23.27021 -22.06810 -21.26056 -20.84003 -19.59594 -17.69587 -17.38958 -15.88862 -15.44604 -15.02680 -14.95597 -14.44480 -14.22400 -13.84991 -13.61188 -13.24222 -12.94205 -12.85222 -12.46276 -12.26989 -12.10358 -11.99389 -11.76166 -11.72581 -11.51542 -11.28073 -11.12556 -10.91889 -10.84255 -10.43041 -10.34329 -10.01057 -9.78277 -9.48691 -8.57804 -8.32992 -8.03240 -7.67019 -7.30876 -6.52716 -4.61118 1.74945 2.01212 2.68785 2.95918 3.01880 3.05159 3.15237 3.85177 4.20741 4.46583 4.64889 4.82142 4.98088 5.08688 5.40893 5.44830 5.61409 5.72304 5.75854 5.78719 5.84303 5.88519 6.03659 6.04915 6.08255 6.16600 6.17887 6.32456 6.46326 6.60334 6.62104 6.79203 6.90864 7.02637 7.05679 7.23621 7.30699 7.47983 7.63400 7.67220 7.71844 7.95471 8.15008 8.53053 8.82209 9.99088 10.17734 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015556 B = 0.005818 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.539823 B = 4811.468381 C = 6255.611342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.173 3.827 3 C -0.172 4.172 4 O -0.559 6.559 5 C -0.141 4.141 6 C -0.114 4.114 7 C -0.128 4.128 8 C 0.030 3.970 9 C -0.240 4.240 10 C -0.032 4.032 11 C -0.321 4.321 12 C 0.133 3.867 13 N -0.483 5.483 14 C 0.268 3.732 15 C -0.420 4.420 16 H 0.094 0.906 17 C 0.068 3.932 18 N -0.707 5.707 19 Si 0.903 3.097 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.107 4.107 24 C -0.115 4.115 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.373 0.627 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.275 0.725 38 H 0.128 0.872 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 2.982 -10.484 11.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.132 3.868 3 C -0.230 4.230 4 O -0.366 6.366 5 C -0.141 4.141 6 C -0.132 4.132 7 C -0.146 4.146 8 C 0.030 3.970 9 C -0.245 4.245 10 C -0.057 4.057 11 C -0.344 4.344 12 C -0.036 4.036 13 N -0.194 5.194 14 C 0.145 3.855 15 C -0.450 4.450 16 H 0.112 0.888 17 C -0.159 4.159 18 N -0.327 5.327 19 Si 0.727 3.273 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.125 4.125 24 C -0.133 4.133 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.221 0.779 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.086 0.914 38 H 0.146 0.854 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.360 3.463 -9.562 10.710 hybrid contribution 0.548 0.229 -0.454 0.747 sum -2.812 3.691 -10.016 11.039 Atomic orbital electron populations 1.21805 0.92547 1.02938 1.02087 1.19920 0.94447 0.89927 0.82474 1.22474 1.01691 0.96306 1.02508 1.86534 1.26589 1.79811 1.43665 1.20202 0.96384 1.01942 0.95605 1.20552 0.95735 0.99176 0.97739 1.21203 0.99697 1.00951 0.92784 1.18753 0.92315 0.93861 0.92111 1.19380 1.15647 0.95459 0.93998 1.20892 0.94660 0.93525 0.96590 1.21226 1.17339 1.00729 0.95143 1.22618 0.93829 0.91771 0.95376 1.68770 1.14191 1.07079 1.29350 1.18522 0.88585 0.93030 0.85371 1.19833 1.34538 0.95332 0.95273 0.88784 1.26159 0.94057 1.00055 0.95610 1.70112 1.26720 1.36234 0.99683 0.86375 0.79629 0.81923 0.79394 1.19147 1.19941 1.18269 1.21420 0.95977 0.97314 0.97809 1.20869 0.99401 1.00375 0.92613 0.90805 0.92165 0.91711 0.92271 0.92039 0.91315 0.77905 0.87385 0.86778 0.88559 0.88671 0.86349 0.91380 0.85416 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.14 37.16 0.30 -1.31 16 2 C 0.17 2.23 1.26 -91.77 -0.12 2.11 16 3 C -0.17 -1.96 8.80 37.16 0.33 -1.64 16 4 O -0.56 -7.21 12.71 -35.23 -0.45 -7.65 16 5 C -0.14 -2.18 4.85 -104.50 -0.51 -2.69 16 6 C -0.11 -1.80 9.30 -39.64 -0.37 -2.17 16 7 C -0.13 -2.36 9.55 -39.16 -0.37 -2.73 16 8 C 0.03 0.64 5.02 -104.90 -0.53 0.11 16 9 C -0.24 -5.70 5.53 -104.07 -0.58 -6.28 16 10 C -0.03 -0.72 9.67 -38.98 -0.38 -1.10 16 11 C -0.32 -7.07 10.10 -39.22 -0.40 -7.47 16 12 C 0.13 3.15 11.17 -17.48 -0.20 2.96 16 13 N -0.48 -13.02 7.85 -10.91 -0.09 -13.10 16 14 C 0.27 7.09 6.56 -84.71 -0.56 6.54 16 15 C -0.42 -10.77 7.97 -37.89 -0.30 -11.08 16 16 H 0.09 2.29 5.25 -52.49 -0.28 2.01 16 17 C 0.07 1.67 5.50 -17.32 -0.10 1.58 16 18 N -0.71 -18.27 11.46 55.56 0.64 -17.63 16 19 Si 0.90 18.10 29.56 -169.99 -5.02 13.07 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 C -0.11 -2.10 7.57 -39.16 -0.30 -2.40 16 24 C -0.11 -1.90 9.12 -39.64 -0.36 -2.27 16 25 H 0.07 0.79 6.49 -51.93 -0.34 0.45 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.37 3.68 7.31 45.56 0.33 4.02 16 32 H 0.11 1.37 6.47 -52.49 -0.34 1.03 16 33 H 0.11 2.00 8.05 -52.49 -0.42 1.57 16 34 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 36 H 0.12 2.49 8.06 -52.48 -0.42 2.06 16 37 H 0.27 6.42 8.29 -40.82 -0.34 6.08 16 38 H 0.13 2.60 7.26 -52.48 -0.38 2.22 16 39 H 0.12 1.64 6.15 -52.48 -0.32 1.32 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -29.06 323.18 -8.73 -37.79 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.26 Total: 10.47 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -4.42 Total: -27.82 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.55 Total: -30.73 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.45 Total: -7.65 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.06 -8.73 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242626663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.335 kcal (2) G-P(sol) polarization free energy of solvation -29.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds