Wall clock time and date at job start Tue Mar 31 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47100 * 2 1 4 4 O 1.42896 * 109.47421 * 239.99643 * 2 1 3 5 5 C 1.50703 * 109.47091 * 119.99727 * 2 1 3 6 6 C 1.38400 * 119.85430 * 150.00097 * 5 2 1 7 7 C 1.37927 * 120.14489 * 179.97438 * 6 5 2 8 8 C 1.39619 * 119.85514 * 0.02562 * 7 6 5 9 9 C 1.47971 * 120.14765 * 179.97438 * 8 7 6 10 10 C 1.40259 * 120.34932 * 180.20321 * 9 8 7 11 11 C 1.36682 * 118.60683 * 180.26880 * 10 9 8 12 12 C 1.40879 * 119.25231 * 359.75881 * 11 10 9 13 13 C 1.40986 * 119.67981 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99986 * 353.67772 * 13 12 11 15 15 C 1.40111 * 120.00160 * 173.67979 * 13 12 11 16 16 N 1.30710 * 119.99458 * 6.30350 * 15 13 12 17 17 Si 1.86799 * 120.00265 * 186.30108 * 15 13 12 18 18 H 1.48497 * 109.46900 * 94.98295 * 17 15 13 19 19 H 1.48496 * 109.47233 * 214.98549 * 17 15 13 20 20 H 1.48505 * 109.46788 * 334.98411 * 17 15 13 21 21 N 1.33781 * 120.63661 * 0.02562 * 12 11 10 22 22 C 1.31193 * 121.50585 * 359.97438 * 21 12 11 23 23 C 1.39619 * 119.71007 * 0.25352 * 8 7 6 24 24 C 1.37940 * 119.84938 * 359.46932 * 23 8 7 25 25 H 1.08994 * 109.47467 * 300.00078 * 1 2 3 26 26 H 1.09000 * 109.46762 * 60.00233 * 1 2 3 27 27 H 1.09000 * 109.46951 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47412 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47123 * 299.99546 * 3 2 1 30 30 H 1.08999 * 109.47460 * 59.99826 * 3 2 1 31 31 H 0.96703 * 113.99962 * 180.02562 * 4 2 1 32 32 H 1.07996 * 119.92382 * 0.02621 * 6 5 2 33 33 H 1.08005 * 120.06921 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.69810 * 0.03229 * 10 9 8 35 35 H 1.07996 * 120.37337 * 179.77294 * 11 10 9 36 36 H 0.97006 * 119.99578 * 180.02562 * 16 15 13 37 37 H 1.08000 * 119.64935 * 179.97438 * 22 21 12 38 38 H 1.07999 * 120.07553 * 179.74604 * 23 8 7 39 39 H 1.07995 * 119.92683 * 180.25855 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2305 6 6 3.2421 -1.3816 1.1929 7 6 3.7078 -2.0333 2.3158 8 6 2.9557 -2.0153 3.4919 9 6 3.4489 -2.7128 4.7002 10 6 2.6947 -2.7010 5.8827 11 6 3.1867 -3.3521 6.9792 12 6 4.4261 -4.0155 6.8872 13 6 4.9423 -4.6895 8.0128 14 1 4.4409 -4.6110 8.9662 15 6 6.1058 -5.4612 7.8947 16 7 6.7811 -5.4582 6.7755 17 14 6.6919 -6.4942 9.3364 18 1 6.1820 -7.8813 9.1911 19 1 8.1766 -6.5126 9.3611 20 1 6.1830 -5.9099 10.6033 21 7 5.1184 -4.0112 5.7425 22 6 4.6721 -3.3951 4.6737 23 6 1.7334 -1.3412 3.5214 24 6 1.2818 -0.6886 2.3931 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 2.9704 -0.7122 -1.2326 32 1 3.8230 -1.3944 0.2826 33 1 4.6522 -2.5565 2.2852 34 1 1.7471 -2.1849 5.9272 35 1 2.6315 -3.3581 7.9054 36 1 7.5864 -5.9927 6.6935 37 1 5.2560 -3.4105 3.7652 38 1 1.1448 -1.3269 4.4268 39 1 0.3385 -0.1633 2.4158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242626966.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:54 Heat of formation + Delta-G solvation = -5.091799 kcal Electronic energy + Delta-G solvation = -20865.512763 eV Core-core repulsion = 17737.215014 eV Total energy + Delta-G solvation = -3128.297749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.68686 -38.36624 -36.84098 -33.96857 -32.86274 -31.39269 -30.73324 -30.16479 -28.46508 -27.41121 -25.61168 -23.11462 -22.72610 -21.07119 -20.85516 -19.70517 -17.81379 -17.53800 -15.93438 -15.62872 -15.13880 -15.09574 -14.56754 -14.22110 -13.68751 -13.56470 -13.27794 -13.07496 -12.97590 -12.56468 -12.44109 -12.22635 -12.07125 -11.90859 -11.84708 -11.65248 -11.31986 -11.18335 -10.96241 -10.84094 -10.59627 -10.34473 -10.06998 -9.92607 -9.64026 -8.80594 -8.51737 -8.29552 -7.72006 -7.20865 -6.63187 -4.66855 1.50796 1.87004 2.70541 2.97086 2.98382 3.00744 3.11126 3.77767 4.13721 4.33911 4.67731 4.74304 4.89796 5.00245 5.28030 5.30871 5.52085 5.60953 5.67259 5.69640 5.73830 5.77246 5.88586 5.93653 5.98191 6.05028 6.09055 6.20268 6.40629 6.48512 6.62856 6.67657 6.85746 6.91722 6.92463 7.03351 7.23668 7.39172 7.56046 7.61493 7.70572 7.86058 8.02378 8.42085 8.71421 9.91471 10.07607 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.045705 B = 0.003119 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.478907 B = 8974.431868 C = 9400.296938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.174 3.826 3 C -0.172 4.172 4 O -0.559 6.559 5 C -0.158 4.158 6 C -0.099 4.099 7 C -0.145 4.145 8 C 0.036 3.964 9 C -0.280 4.280 10 C -0.035 4.035 11 C -0.272 4.272 12 C 0.251 3.749 13 C -0.407 4.407 14 H 0.089 0.911 15 C 0.063 3.937 16 N -0.699 5.699 17 Si 0.913 3.087 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.259 1.259 21 N -0.489 5.489 22 C 0.158 3.842 23 C -0.148 4.148 24 C -0.100 4.100 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.374 0.626 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.278 0.722 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 7.738 -8.355 12.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.133 3.867 3 C -0.229 4.229 4 O -0.366 6.366 5 C -0.158 4.158 6 C -0.117 4.117 7 C -0.163 4.163 8 C 0.035 3.965 9 C -0.285 4.285 10 C -0.058 4.058 11 C -0.294 4.294 12 C 0.128 3.872 13 C -0.436 4.436 14 H 0.107 0.893 15 C -0.165 4.165 16 N -0.318 5.318 17 Si 0.736 3.264 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.183 1.183 21 N -0.201 5.201 22 C -0.012 4.012 23 C -0.167 4.167 24 C -0.118 4.118 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.222 0.778 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.433 7.114 -8.491 12.337 hybrid contribution 0.064 0.051 0.783 0.788 sum -5.369 7.165 -7.707 11.813 Atomic orbital electron populations 1.21800 0.92637 1.02939 1.01998 1.19890 0.94382 0.89860 0.82523 1.22472 1.01670 0.96366 1.02409 1.86541 1.26649 1.79780 1.43613 1.20149 0.96734 1.03217 0.95715 1.20596 0.95421 0.98021 0.97705 1.21127 1.00604 1.01934 0.92615 1.18898 0.92339 0.92554 0.92670 1.19057 1.01283 1.14210 0.93999 1.20659 0.96897 0.95718 0.92544 1.21440 1.00327 1.09071 0.98561 1.18679 0.87979 0.89023 0.91470 1.19816 1.06276 1.21686 0.95841 0.89331 1.26215 0.96195 0.96997 0.97097 1.70121 1.10583 1.26938 1.24169 0.86217 0.78557 0.80244 0.81373 1.19197 1.19828 1.18270 1.68802 1.32456 1.20325 0.98494 1.22778 0.91101 0.90677 0.96599 1.21144 0.96921 1.00417 0.98169 1.20794 0.98929 0.99498 0.92575 0.90959 0.92139 0.91703 0.92281 0.92021 0.91497 0.77831 0.87235 0.86167 0.88312 0.88096 0.91106 0.85991 0.86527 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.14 37.16 0.30 -1.17 16 2 C 0.17 2.07 1.26 -91.77 -0.12 1.95 16 3 C -0.17 -1.74 8.80 37.16 0.33 -1.41 16 4 O -0.56 -6.86 12.71 -35.23 -0.45 -7.31 16 5 C -0.16 -2.24 4.85 -104.50 -0.51 -2.75 16 6 C -0.10 -1.48 9.30 -39.64 -0.37 -1.84 16 7 C -0.14 -2.50 9.44 -39.18 -0.37 -2.87 16 8 C 0.04 0.70 5.88 -104.88 -0.62 0.08 16 9 C -0.28 -6.20 5.92 -104.45 -0.62 -6.82 16 10 C -0.04 -0.77 9.46 -39.38 -0.37 -1.15 16 11 C -0.27 -6.46 9.76 -39.15 -0.38 -6.84 16 12 C 0.25 6.65 6.54 -84.98 -0.56 6.09 16 13 C -0.41 -10.39 9.11 -37.84 -0.34 -10.74 16 14 H 0.09 2.09 7.86 -52.48 -0.41 1.68 16 15 C 0.06 1.51 5.49 -17.33 -0.10 1.42 16 16 N -0.70 -17.79 11.47 55.56 0.64 -17.15 16 17 Si 0.91 17.58 29.57 -169.99 -5.03 12.56 16 18 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 21 N -0.49 -13.14 7.86 -10.84 -0.09 -13.22 16 22 C 0.16 3.76 10.60 -17.13 -0.18 3.58 16 23 C -0.15 -2.53 9.44 -39.18 -0.37 -2.90 16 24 C -0.10 -1.48 9.12 -39.63 -0.36 -1.84 16 25 H 0.07 0.68 6.49 -51.93 -0.34 0.34 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.37 3.45 7.31 45.56 0.33 3.79 16 32 H 0.11 1.31 6.47 -52.49 -0.34 0.97 16 33 H 0.12 1.99 6.22 -52.48 -0.33 1.67 16 34 H 0.10 1.87 6.30 -52.49 -0.33 1.54 16 35 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 37 H 0.12 2.61 6.21 -52.49 -0.33 2.28 16 38 H 0.12 1.87 6.25 -52.49 -0.33 1.54 16 39 H 0.11 1.40 6.15 -52.49 -0.32 1.07 16 LS Contribution 322.38 15.07 4.86 4.86 Total: -1.00 -28.96 322.38 -8.75 -37.71 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -4.06 Total: 9.74 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -4.63 Total: -27.20 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.55 Total: -30.37 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.45 Total: -7.31 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.96 -8.75 -37.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242626966.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.623 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds