Wall clock time and date at job start Tue Mar 31 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38867 * 119.24551 * 2 1 4 4 C 1.36889 * 119.79565 * 180.02562 * 3 2 1 5 5 C 1.41118 * 118.39615 * 0.02562 * 4 3 2 6 6 C 1.40891 * 120.71761 * 180.02562 * 5 4 3 7 7 H 1.07995 * 119.99519 * 151.51746 * 6 5 4 8 8 C 1.40074 * 120.00042 * 331.52455 * 6 5 4 9 9 N 1.30767 * 119.99930 * 348.36998 * 8 6 5 10 10 Si 1.86800 * 119.99926 * 168.37749 * 8 6 5 11 11 H 1.48502 * 109.47042 * 59.99569 * 10 8 6 12 12 H 1.48499 * 109.47038 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47115 * 299.99363 * 10 8 6 14 14 C 1.41870 * 118.56302 * 359.97438 * 5 4 3 15 15 C 1.47817 * 119.98966 * 179.97438 * 14 5 4 16 16 C 1.39675 * 120.14986 * 136.36886 * 15 14 5 17 17 C 1.37919 * 119.84495 * 180.02562 * 16 15 14 18 18 C 1.38396 * 120.15282 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.84865 * 180.02562 * 18 17 16 20 20 H 1.08998 * 109.47277 * 24.99221 * 19 18 17 21 21 C 1.53001 * 109.46891 * 264.99792 * 19 18 17 22 22 O 1.42893 * 109.47611 * 144.99552 * 19 18 17 23 23 C 1.38396 * 120.30854 * 0.27284 * 18 17 16 24 24 C 1.37929 * 120.14998 * 359.49167 * 23 18 17 25 25 N 1.31743 * 119.24572 * 180.27010 * 2 1 3 26 26 H 1.08995 * 109.47067 * 90.00296 * 1 2 3 27 27 H 1.08999 * 109.47121 * 209.99949 * 1 2 3 28 28 H 1.09000 * 109.47628 * 330.00192 * 1 2 3 29 29 H 1.07997 * 120.10274 * 0.04201 * 3 2 1 30 30 H 1.08004 * 120.79799 * 179.97438 * 4 3 2 31 31 H 0.97002 * 120.00535 * 180.02562 * 9 8 6 32 32 H 1.07998 * 120.07350 * 0.03855 * 16 15 14 33 33 H 1.08002 * 119.92498 * 179.97438 * 17 16 15 34 34 H 1.09003 * 109.47163 * 299.99794 * 21 19 18 35 35 H 1.09000 * 109.47258 * 59.99692 * 21 19 18 36 36 H 1.09002 * 109.47280 * 179.97438 * 21 19 18 37 37 H 0.96705 * 114.00123 * 60.00079 * 22 19 18 38 38 H 1.07998 * 119.93061 * 179.72695 * 23 18 17 39 39 H 1.07994 * 120.07881 * 180.24724 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2117 0.0000 4 6 3.5543 1.2248 -0.0005 5 6 4.2373 -0.0101 -0.0016 6 6 5.6455 -0.0536 -0.0017 7 1 6.1597 -0.8924 0.4436 8 6 6.3785 0.9910 -0.5791 9 7 5.7722 1.8873 -1.3134 10 14 8.2222 1.1038 -0.3004 11 1 8.8772 -0.1238 -0.8193 12 1 8.7590 2.2902 -1.0141 13 1 8.4960 1.2343 1.1532 14 6 3.4752 -1.2067 -0.0016 15 6 4.1582 -2.5176 -0.0033 16 6 3.7080 -3.5443 0.8300 17 6 4.3503 -4.7648 0.8237 18 6 5.4381 -4.9736 -0.0060 19 6 6.1344 -6.3101 -0.0077 20 1 5.4392 -7.0825 0.3210 21 6 7.3313 -6.2628 0.9442 22 8 6.5885 -6.6090 -1.3292 23 6 5.8927 -3.9592 -0.8304 24 6 5.2568 -2.7352 -0.8379 25 7 2.1506 -1.1495 -0.0054 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6349 2.1407 0.0007 30 1 4.0983 2.1578 -0.0010 31 1 6.2798 2.6105 -1.7136 32 1 2.8589 -3.3828 1.4774 33 1 4.0036 -5.5594 1.4677 34 1 8.0266 -5.4904 0.6156 35 1 6.9850 -6.0348 1.9523 36 1 7.8347 -7.2296 0.9434 37 1 7.2120 -5.9620 -1.6867 38 1 6.7448 -4.1274 -1.4722 39 1 5.6100 -1.9457 -1.4845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242644082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:07 Heat of formation + Delta-G solvation = -18.831262 kcal Electronic energy + Delta-G solvation = -21514.144210 eV Core-core repulsion = 18385.250673 eV Total energy + Delta-G solvation = -3128.893537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.36043 -38.39029 -36.53716 -34.39720 -32.49852 -31.04907 -30.76539 -30.18649 -28.61640 -27.67266 -24.72074 -23.45333 -22.07715 -21.57789 -20.55678 -19.87916 -17.53931 -17.12987 -15.73374 -15.70039 -15.34877 -14.71766 -14.49828 -14.06218 -13.72253 -13.58190 -13.19023 -13.02550 -12.85780 -12.70774 -12.26982 -12.07591 -11.92895 -11.68583 -11.60552 -11.51040 -11.18406 -11.08577 -11.01641 -10.81172 -10.63052 -10.36177 -10.01587 -9.80576 -9.45979 -8.56493 -8.29116 -8.12543 -7.98129 -7.31997 -6.93285 -4.56649 1.73002 2.09244 2.56595 2.91097 2.94198 2.96860 3.09644 3.75316 4.32087 4.47546 4.60532 4.91679 5.20059 5.25435 5.34409 5.46624 5.55921 5.59005 5.75521 5.87688 5.99402 6.05344 6.10212 6.17493 6.28843 6.34248 6.37609 6.47505 6.62686 6.63590 6.78626 6.85934 6.95145 7.01153 7.09703 7.21938 7.43487 7.57890 7.64762 7.69075 7.80645 7.86735 8.31222 8.53558 8.60193 9.52403 9.94359 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.006617 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.214178 B = 4230.598319 C = 6160.358607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.006 4.006 3 C -0.144 4.144 4 C -0.125 4.125 5 C 0.084 3.916 6 C -0.440 4.440 7 H 0.088 0.912 8 C 0.073 3.927 9 N -0.789 5.789 10 Si 0.911 3.089 11 H -0.261 1.261 12 H -0.276 1.276 13 H -0.262 1.262 14 C 0.015 3.985 15 C 0.027 3.973 16 C -0.108 4.108 17 C -0.120 4.120 18 C -0.142 4.142 19 C 0.148 3.852 20 H 0.100 0.900 21 C -0.179 4.179 22 O -0.563 6.563 23 C -0.121 4.121 24 C -0.090 4.090 25 N -0.449 5.449 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.128 0.872 31 H 0.285 0.715 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.373 0.627 38 H 0.110 0.890 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 -6.551 2.320 7.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 C -0.164 4.164 4 C -0.151 4.151 5 C 0.079 3.921 6 C -0.469 4.469 7 H 0.106 0.894 8 C -0.146 4.146 9 N -0.414 5.414 10 Si 0.735 3.265 11 H -0.186 1.186 12 H -0.201 1.201 13 H -0.186 1.186 14 C -0.123 4.123 15 C 0.026 3.974 16 C -0.127 4.127 17 C -0.138 4.138 18 C -0.142 4.142 19 C 0.090 3.910 20 H 0.118 0.882 21 C -0.236 4.236 22 O -0.369 6.369 23 C -0.140 4.140 24 C -0.109 4.109 25 N -0.158 5.158 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.221 0.779 38 H 0.128 0.872 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.622 -7.597 2.243 8.085 hybrid contribution 1.636 1.690 0.013 2.352 sum 3.258 -5.907 2.256 7.113 Atomic orbital electron populations 1.20288 0.91502 1.00848 1.00549 1.20277 0.94877 0.88542 1.11131 1.21271 0.95478 0.97142 1.02524 1.21440 0.92581 0.98913 1.02180 1.18334 0.94129 0.90791 0.88820 1.19572 0.90994 1.04809 1.31536 0.89409 1.25996 1.01628 0.94116 0.92844 1.69727 1.38889 1.10988 1.21791 0.86292 0.81339 0.78945 0.79946 1.18556 1.20127 1.18616 1.19489 0.88373 0.91379 1.13097 1.18462 0.93500 0.91603 0.93801 1.21219 0.99552 0.92674 0.99212 1.20675 0.96192 0.97255 0.99680 1.20324 0.98153 0.96091 0.99678 1.20703 0.94244 0.93699 0.82381 0.88197 1.22484 0.98567 1.02057 1.00529 1.86558 1.66142 1.53203 1.30981 1.20615 1.00288 0.93257 0.99798 1.21432 0.95010 0.96278 0.98162 1.66847 1.09613 1.29271 1.10030 0.93138 0.92584 0.92877 0.88286 0.85407 0.90340 0.86451 0.87008 0.92128 0.91422 0.92085 0.77850 0.87185 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.15 36.01 0.37 -0.97 16 2 C -0.01 -0.15 6.79 -82.40 -0.56 -0.71 16 3 C -0.14 -3.27 9.64 -39.84 -0.38 -3.66 16 4 C -0.13 -3.11 8.72 -38.98 -0.34 -3.45 16 5 C 0.08 2.13 5.54 -106.41 -0.59 1.54 16 6 C -0.44 -10.72 6.72 -37.89 -0.25 -10.98 16 7 H 0.09 2.09 6.47 -52.49 -0.34 1.75 16 8 C 0.07 1.69 5.26 -17.32 -0.09 1.60 16 9 N -0.79 -18.90 10.91 55.55 0.61 -18.29 16 10 Si 0.91 17.42 29.58 -169.99 -5.03 12.40 16 11 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 12 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 13 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 14 C 0.01 0.36 6.43 -82.24 -0.53 -0.17 16 15 C 0.03 0.60 5.26 -104.91 -0.55 0.05 16 16 C -0.11 -2.11 9.67 -39.16 -0.38 -2.49 16 17 C -0.12 -1.99 9.66 -39.64 -0.38 -2.38 16 18 C -0.14 -2.25 5.01 -104.51 -0.52 -2.78 16 19 C 0.15 1.94 3.82 -27.88 -0.11 1.83 16 20 H 0.10 1.23 8.05 -51.93 -0.42 0.81 16 21 C -0.18 -1.99 9.52 37.16 0.35 -1.64 16 22 O -0.56 -7.58 13.14 -35.23 -0.46 -8.04 16 23 C -0.12 -2.07 9.31 -39.64 -0.37 -2.44 16 24 C -0.09 -1.84 7.85 -39.16 -0.31 -2.14 16 25 N -0.45 -10.95 10.06 -5.45 -0.05 -11.01 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.13 3.20 6.33 -52.48 -0.33 2.86 16 31 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 32 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.37 3.97 7.38 45.56 0.34 4.31 16 38 H 0.11 1.55 6.60 -52.49 -0.35 1.21 16 39 H 0.13 2.91 6.74 -52.49 -0.35 2.55 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -27.61 327.17 -9.05 -36.65 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -4.39 Total: 12.13 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -4.65 Total: -28.76 kcal Atomic # 7 Polarization: -29.85 SS G_CDS: 0.55 Total: -29.30 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.46 Total: -8.04 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.61 -9.05 -36.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242644082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.821 kcal (2) G-P(sol) polarization free energy of solvation -27.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds