Wall clock time and date at job start Tue Mar 31 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31272 * 119.79619 * 2 1 4 4 C 1.33022 * 121.72076 * 179.97438 * 3 2 1 5 5 C 1.47971 * 119.44592 * 180.02562 * 4 3 2 6 6 C 1.39607 * 120.13804 * 179.72023 * 5 4 3 7 7 C 1.37945 * 119.84613 * 179.74395 * 6 5 4 8 8 C 1.38384 * 120.14605 * 0.52785 * 7 6 5 9 9 C 1.50702 * 119.85573 * 179.76420 * 8 7 6 10 10 H 1.09001 * 109.47380 * 159.98285 * 9 8 7 11 11 C 1.52996 * 109.47131 * 279.98346 * 9 8 7 12 12 O 1.42899 * 109.46756 * 39.98009 * 9 8 7 13 13 C 1.38393 * 120.29123 * 359.74773 * 8 7 6 14 14 C 1.37932 * 120.14884 * 359.97133 * 13 8 7 15 15 C 1.39889 * 121.09965 * 0.02562 * 4 3 2 16 16 C 1.36607 * 119.46971 * 359.96101 * 15 4 3 17 17 C 1.40943 * 119.80066 * 179.97438 * 2 1 3 18 18 C 1.41055 * 120.55442 * 359.74488 * 17 2 1 19 19 H 1.08001 * 119.99617 * 329.98518 * 18 17 2 20 20 C 1.40022 * 120.00309 * 149.97771 * 18 17 2 21 21 N 1.30789 * 120.00135 * 162.24090 * 20 18 17 22 22 Si 1.86798 * 119.99961 * 342.24973 * 20 18 17 23 23 H 1.48497 * 109.47588 * 95.37807 * 22 20 18 24 24 H 1.48505 * 109.46978 * 215.38120 * 22 20 18 25 25 H 1.48504 * 109.47214 * 335.37514 * 22 20 18 26 26 H 1.09002 * 109.47252 * 270.02813 * 1 2 3 27 27 H 1.09010 * 109.47102 * 30.02352 * 1 2 3 28 28 H 1.09002 * 109.47260 * 150.02332 * 1 2 3 29 29 H 1.08000 * 120.07922 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.92445 * 180.27440 * 7 6 5 31 31 H 1.09004 * 109.47540 * 59.99692 * 11 9 8 32 32 H 1.09001 * 109.47048 * 179.97438 * 11 9 8 33 33 H 1.09000 * 109.47163 * 300.00004 * 11 9 8 34 34 H 0.96694 * 114.00409 * 300.00196 * 12 9 8 35 35 H 1.08003 * 119.92400 * 179.97438 * 13 8 7 36 36 H 1.07997 * 120.07438 * 180.02562 * 14 13 8 37 37 H 1.08004 * 120.26165 * 179.97438 * 15 4 3 38 38 H 1.08001 * 120.79237 * 179.97438 * 16 15 4 39 39 H 0.96996 * 119.99918 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1392 0.0000 4 6 3.4888 1.1839 0.0005 5 6 4.1725 2.4961 0.0011 6 6 5.5671 2.5599 0.0075 7 6 6.1983 3.7864 0.0026 8 6 5.4523 4.9519 0.0024 9 6 6.1486 6.2884 0.0025 10 1 5.4603 7.0568 -0.3495 11 6 6.6058 6.6252 1.4231 12 8 7.2844 6.2337 -0.8630 13 6 4.0695 4.8956 0.0018 14 6 3.4258 3.6757 0.0008 15 6 4.2512 0.0110 0.0005 16 6 3.6203 -1.2007 0.0008 17 6 2.2075 -1.2230 0.0005 18 6 1.5098 -2.4490 0.0065 19 1 0.5406 -2.5164 0.4783 20 6 2.0736 -3.5784 -0.5994 21 7 1.6214 -4.7707 -0.3088 22 14 3.4717 -3.3822 -1.8225 23 1 4.7698 -3.5573 -1.1229 24 1 3.3427 -4.4063 -2.8902 25 1 3.4141 -2.0270 -2.4270 26 1 -0.3634 0.0005 1.0277 27 1 -0.3634 0.8899 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 6.1505 1.6510 0.0117 30 1 7.2771 3.8372 0.0031 31 1 7.2942 5.8568 1.7752 32 1 7.1099 7.5917 1.4231 33 1 5.7395 6.6669 2.0833 34 1 7.9405 5.5701 -0.6095 35 1 3.4931 5.8090 0.0021 36 1 2.3467 3.6332 0.0000 37 1 5.3299 0.0630 0.0005 38 1 4.1878 -2.1195 0.0004 39 1 2.0122 -5.5531 -0.7283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242645915.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:10 Heat of formation + Delta-G solvation = -17.493413 kcal Electronic energy + Delta-G solvation = -20996.438086 eV Core-core repulsion = 17867.602563 eV Total energy + Delta-G solvation = -3128.835523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.60809 -38.68074 -36.81246 -34.27937 -32.72544 -31.80174 -31.17144 -30.51794 -28.96694 -27.28126 -25.33769 -23.32519 -22.55365 -21.92817 -20.58256 -20.00767 -17.69888 -17.50948 -16.27257 -15.70345 -15.39383 -15.12433 -14.88621 -14.09644 -13.81984 -13.53410 -13.50041 -13.26256 -13.07665 -12.99504 -12.80633 -12.18065 -12.14713 -12.03736 -11.78599 -11.55068 -11.37716 -11.14070 -11.00860 -10.92126 -10.64175 -10.39515 -10.09425 -10.02977 -9.68051 -8.73899 -8.61020 -8.50491 -8.27250 -7.38515 -7.27775 -4.72283 1.31628 1.77646 2.40731 2.60226 2.91962 3.02862 3.12806 3.73467 3.98016 4.35745 4.51188 4.70902 4.94976 5.06747 5.10673 5.23553 5.26363 5.34523 5.56063 5.63696 5.75334 5.77437 5.91707 5.95841 6.03379 6.16573 6.26077 6.36918 6.42606 6.49341 6.55896 6.64449 6.73897 6.77404 6.83956 7.00175 7.13806 7.28582 7.42783 7.49130 7.50424 7.64830 7.99026 8.25413 8.41845 9.30127 9.70424 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.030165 B = 0.003813 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.993513 B = 7342.158686 C = 7985.452296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.032 3.968 3 N -0.440 5.440 4 C -0.008 4.008 5 C 0.021 3.979 6 C -0.132 4.132 7 C -0.108 4.108 8 C -0.149 4.149 9 C 0.148 3.852 10 H 0.102 0.898 11 C -0.179 4.179 12 O -0.561 6.561 13 C -0.109 4.109 14 C -0.109 4.109 15 C -0.099 4.099 16 C -0.214 4.214 17 C 0.050 3.950 18 C -0.411 4.411 19 H 0.102 0.898 20 C 0.082 3.918 21 N -0.784 5.784 22 Si 0.912 3.088 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.243 1.243 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.372 0.628 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 11.802 0.726 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 N -0.148 5.148 4 C -0.139 4.139 5 C 0.020 3.980 6 C -0.151 4.151 7 C -0.126 4.126 8 C -0.150 4.150 9 C 0.089 3.911 10 H 0.119 0.881 11 C -0.236 4.236 12 O -0.367 6.367 13 C -0.127 4.127 14 C -0.127 4.127 15 C -0.120 4.120 16 C -0.238 4.238 17 C 0.045 3.955 18 C -0.438 4.438 19 H 0.120 0.880 20 C -0.141 4.141 21 N -0.406 5.406 22 Si 0.737 3.263 23 H -0.192 1.192 24 H -0.211 1.211 25 H -0.167 1.167 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.220 0.780 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.248 12.755 0.424 14.209 hybrid contribution 1.411 -1.609 -0.077 2.142 sum 7.659 11.146 0.347 13.528 Atomic orbital electron populations 1.20322 0.90357 1.01680 1.00937 1.21054 0.95453 0.87500 1.07611 1.66785 1.08595 1.30323 1.09062 1.18734 0.89040 0.90672 1.15495 1.18673 0.92039 0.92076 0.95186 1.21127 0.93896 0.97358 1.02734 1.20548 0.98662 0.92008 1.01379 1.20341 0.94407 0.95227 1.05030 1.20722 0.86821 0.93898 0.89622 0.88060 1.22485 1.02246 1.01904 0.97009 1.86582 1.32912 1.62059 1.55187 1.20826 0.93358 0.97666 1.00819 1.21254 1.00604 0.91019 0.99846 1.21222 0.98819 0.93174 0.98737 1.21021 0.94749 0.96631 1.11441 1.18512 0.91929 0.94262 0.90812 1.19606 1.05188 0.90734 1.28304 0.87980 1.26315 0.97076 0.94198 0.96509 1.69652 1.37413 0.99441 1.34071 0.86274 0.80026 0.80190 0.79787 1.19214 1.21136 1.16651 0.92826 0.92824 0.90976 0.86152 0.87052 0.92237 0.91928 0.91369 0.77975 0.86649 0.85175 0.87576 0.87226 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 9.58 36.01 0.35 -1.14 16 2 C 0.03 0.74 6.86 -81.81 -0.56 0.18 16 3 N -0.44 -10.13 9.30 -5.39 -0.05 -10.18 16 4 C -0.01 -0.17 6.74 -82.75 -0.56 -0.73 16 5 C 0.02 0.40 5.88 -104.89 -0.62 -0.21 16 6 C -0.13 -2.16 9.42 -39.18 -0.37 -2.52 16 7 C -0.11 -1.49 9.30 -39.63 -0.37 -1.86 16 8 C -0.15 -2.02 4.98 -104.51 -0.52 -2.54 16 9 C 0.15 1.64 3.82 -27.88 -0.11 1.54 16 10 H 0.10 1.07 8.00 -51.93 -0.42 0.66 16 11 C -0.18 -1.65 9.51 37.16 0.35 -1.29 16 12 O -0.56 -6.49 13.19 -35.23 -0.46 -6.96 16 13 C -0.11 -1.59 9.65 -39.64 -0.38 -1.97 16 14 C -0.11 -1.90 9.57 -39.18 -0.38 -2.27 16 15 C -0.10 -2.15 9.38 -39.55 -0.37 -2.52 16 16 C -0.21 -4.97 7.23 -39.01 -0.28 -5.25 16 17 C 0.05 1.22 5.10 -106.64 -0.54 0.67 16 18 C -0.41 -10.15 8.53 -37.85 -0.32 -10.47 16 19 H 0.10 2.58 7.24 -52.49 -0.38 2.20 16 20 C 0.08 1.96 5.42 -17.33 -0.09 1.87 16 21 N -0.78 -19.06 13.93 55.55 0.77 -18.28 16 22 Si 0.91 19.39 24.53 -169.99 -4.17 15.22 16 23 H -0.27 -5.47 6.71 56.52 0.38 -5.09 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.24 -5.46 6.85 56.52 0.39 -5.07 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 28 H 0.07 1.40 6.86 -51.93 -0.36 1.05 16 29 H 0.12 1.81 6.15 -52.49 -0.32 1.49 16 30 H 0.11 1.18 6.77 -52.49 -0.36 0.83 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.37 3.13 7.49 45.56 0.34 3.47 16 35 H 0.12 1.39 8.03 -52.48 -0.42 0.97 16 36 H 0.13 2.33 7.52 -52.49 -0.39 1.94 16 37 H 0.11 1.96 6.15 -52.48 -0.32 1.64 16 38 H 0.11 2.47 4.82 -52.49 -0.25 2.21 16 39 H 0.29 6.38 8.29 -40.82 -0.34 6.04 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -27.45 320.62 -8.02 -35.47 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.16 Total: 8.43 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -4.77 Total: -28.53 kcal Atomic # 7 Polarization: -29.19 SS G_CDS: 0.72 Total: -28.46 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.46 Total: -6.96 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.17 Total: 15.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.45 -8.02 -35.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242645915.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.976 kcal (2) G-P(sol) polarization free energy of solvation -27.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds