Wall clock time and date at job start Tue Mar 31 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31266 * 119.79730 * 2 1 4 4 C 1.33024 * 121.72179 * 180.26204 * 3 2 1 5 5 C 1.47969 * 119.44810 * 179.74869 * 4 3 2 6 6 C 1.39608 * 120.14116 * 359.72906 * 5 4 3 7 7 C 1.37941 * 119.85080 * 180.02562 * 6 5 4 8 8 C 1.38387 * 120.14210 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.85507 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.46679 * 24.99791 * 9 8 7 11 11 C 1.52997 * 109.46702 * 265.00196 * 9 8 7 12 12 O 1.42896 * 109.47636 * 144.99820 * 9 8 7 13 13 C 1.38391 * 120.29569 * 0.27743 * 8 7 6 14 14 C 1.37934 * 120.14429 * 359.48723 * 13 8 7 15 15 C 1.39891 * 121.10136 * 359.47539 * 4 3 2 16 16 C 1.36614 * 119.46526 * 0.24790 * 15 4 3 17 17 C 1.40948 * 119.79851 * 179.73817 * 2 1 3 18 18 C 1.41046 * 120.55509 * 0.02829 * 17 2 1 19 19 H 1.08004 * 120.00072 * 334.64911 * 18 17 2 20 20 C 1.40028 * 119.99925 * 154.65454 * 18 17 2 21 21 N 1.30790 * 120.00286 * 343.67154 * 20 18 17 22 22 Si 1.86804 * 119.99866 * 163.66953 * 20 18 17 23 23 H 1.48497 * 109.47423 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47193 * 120.00121 * 22 20 18 25 25 H 1.48503 * 109.47132 * 239.99777 * 22 20 18 26 26 H 1.09001 * 109.47330 * 270.25624 * 1 2 3 27 27 H 1.08998 * 109.46851 * 30.26333 * 1 2 3 28 28 H 1.09006 * 109.46702 * 150.25801 * 1 2 3 29 29 H 1.07998 * 120.08087 * 0.02562 * 6 5 4 30 30 H 1.07995 * 119.92914 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47223 * 299.99262 * 11 9 8 32 32 H 1.09000 * 109.47414 * 59.99944 * 11 9 8 33 33 H 1.09009 * 109.47258 * 179.97438 * 11 9 8 34 34 H 0.96695 * 113.99836 * 59.99482 * 12 9 8 35 35 H 1.08004 * 119.92867 * 179.74532 * 13 8 7 36 36 H 1.08001 * 120.07754 * 180.23224 * 14 13 8 37 37 H 1.07997 * 120.26772 * 180.27680 * 15 4 3 38 38 H 1.08000 * 120.78637 * 179.97438 * 16 15 4 39 39 H 0.96997 * 120.00006 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1391 0.0000 4 6 3.4888 1.1838 -0.0052 5 6 4.1726 2.4960 -0.0106 6 6 3.4258 3.6756 -0.0159 7 6 4.0695 4.8956 -0.0214 8 6 5.4522 4.9519 -0.0212 9 6 6.1487 6.2883 -0.0267 10 1 5.4904 7.0428 0.4042 11 6 6.4963 6.6762 -1.4652 12 8 7.3472 6.2041 0.7469 13 6 6.1983 3.7863 -0.0211 14 6 5.5672 2.5599 -0.0107 15 6 4.2513 0.0109 0.0001 16 6 3.6203 -1.2007 0.0056 17 6 2.2075 -1.2231 0.0056 18 6 1.5098 -2.4489 0.0106 19 1 0.5079 -2.4984 0.4109 20 6 2.1162 -3.6017 -0.5033 21 7 3.1737 -3.4998 -1.2662 22 14 1.4148 -5.2853 -0.0992 23 1 0.2250 -5.1290 0.7755 24 1 1.0184 -5.9709 -1.3554 25 1 2.4432 -6.0944 0.6030 26 1 -0.3634 0.0046 1.0276 27 1 -0.3633 0.8876 -0.5179 28 1 -0.3633 -0.8924 -0.5099 29 1 2.3467 3.6331 -0.0157 30 1 3.4931 5.8089 -0.0252 31 1 7.1546 5.9218 -1.8960 32 1 5.5821 6.7405 -2.0553 33 1 6.9997 7.6431 -1.4693 34 1 7.9809 5.5508 0.4205 35 1 7.2771 3.8371 -0.0251 36 1 6.1505 1.6510 -0.0069 37 1 5.3300 0.0629 0.0003 38 1 4.1879 -2.1195 0.0093 39 1 3.5935 -4.2984 -1.6224 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242645916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:12 Heat of formation + Delta-G solvation = -19.534318 kcal Electronic energy + Delta-G solvation = -20886.772016 eV Core-core repulsion = 17757.847993 eV Total energy + Delta-G solvation = -3128.924024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.46514 -38.46032 -36.71588 -34.34133 -32.58838 -31.33680 -30.89542 -30.25488 -28.85558 -27.02733 -25.35202 -23.37920 -22.43197 -21.67468 -20.26803 -19.93934 -17.52386 -17.41775 -16.05959 -15.58388 -15.37480 -14.96950 -14.62346 -14.14215 -13.61767 -13.52102 -13.35775 -13.11875 -12.96077 -12.86511 -12.30907 -12.10294 -11.99635 -11.74813 -11.65488 -11.53344 -11.23275 -11.12354 -10.97764 -10.82840 -10.67673 -10.54775 -10.02986 -9.84689 -9.58352 -8.58881 -8.50267 -8.30270 -8.12096 -7.27751 -7.01264 -4.59890 1.46820 1.88355 2.59272 2.86948 2.91717 2.96620 3.09677 3.69449 4.10740 4.41781 4.60564 4.79249 5.04908 5.13510 5.24029 5.34304 5.46387 5.51287 5.63485 5.73733 5.88536 5.96207 5.99066 6.14051 6.25452 6.33454 6.43840 6.52804 6.58559 6.67158 6.71745 6.78058 6.88141 6.93016 7.00508 7.20629 7.27342 7.42130 7.56517 7.64401 7.73865 7.83628 8.25724 8.45985 8.56481 9.52092 9.83058 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036283 B = 0.003384 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.516983 B = 8272.817365 C = 8812.186162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.009 3.991 3 N -0.446 5.446 4 C -0.006 4.006 5 C 0.024 3.976 6 C -0.111 4.111 7 C -0.110 4.110 8 C -0.152 4.152 9 C 0.149 3.851 10 H 0.101 0.899 11 C -0.179 4.179 12 O -0.562 6.562 13 C -0.108 4.108 14 C -0.132 4.132 15 C -0.124 4.124 16 C -0.143 4.143 17 C 0.074 3.926 18 C -0.429 4.429 19 H 0.090 0.910 20 C 0.071 3.929 21 N -0.775 5.775 22 Si 0.915 3.085 23 H -0.256 1.256 24 H -0.271 1.271 25 H -0.269 1.269 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.372 0.628 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.103 8.293 -0.095 9.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.137 4.137 3 N -0.154 5.154 4 C -0.140 4.140 5 C 0.023 3.977 6 C -0.130 4.130 7 C -0.128 4.128 8 C -0.153 4.153 9 C 0.090 3.910 10 H 0.119 0.881 11 C -0.236 4.236 12 O -0.368 6.368 13 C -0.127 4.127 14 C -0.151 4.151 15 C -0.145 4.145 16 C -0.168 4.168 17 C 0.069 3.931 18 C -0.458 4.458 19 H 0.108 0.892 20 C -0.150 4.150 21 N -0.399 5.399 22 Si 0.738 3.262 23 H -0.180 1.180 24 H -0.196 1.196 25 H -0.194 1.194 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.220 0.780 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.119 0.881 38 H 0.144 0.856 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.529 9.382 0.094 10.024 hybrid contribution 0.604 -2.186 -0.353 2.295 sum 4.133 7.195 -0.258 8.302 Atomic orbital electron populations 1.20263 0.90970 1.01275 1.00416 1.21010 0.95160 0.87975 1.09596 1.66721 1.08639 1.30433 1.09584 1.18739 0.89091 0.90665 1.15472 1.18725 0.92034 0.92224 0.94674 1.21250 1.00542 0.91071 1.00110 1.20789 0.93338 0.97610 1.01059 1.20313 0.94389 0.95173 1.05432 1.20704 0.85528 0.93811 0.90950 0.88109 1.22484 1.02539 1.01736 0.96865 1.86574 1.29799 1.63597 1.56838 1.20542 0.98613 0.92032 1.01464 1.21136 0.93974 0.97309 1.02680 1.21297 0.98598 0.93481 1.01101 1.21308 0.94705 0.96624 1.04136 1.18430 0.92547 0.93209 0.88893 1.19749 1.01699 0.91843 1.32480 0.89190 1.26113 0.94196 1.02156 0.92499 1.69785 1.16949 1.32418 1.20723 0.86136 0.80278 0.80243 0.79530 1.17963 1.19617 1.19398 0.93280 0.93140 0.91438 0.85307 0.86795 0.92229 0.91390 0.91992 0.77960 0.87117 0.86118 0.88099 0.85590 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.58 36.01 0.34 -1.11 16 2 C 0.01 0.21 6.86 -81.81 -0.56 -0.35 16 3 N -0.45 -10.83 9.30 -5.39 -0.05 -10.88 16 4 C -0.01 -0.14 6.74 -82.74 -0.56 -0.70 16 5 C 0.02 0.49 5.88 -104.89 -0.62 -0.12 16 6 C -0.11 -2.05 9.57 -39.18 -0.38 -2.43 16 7 C -0.11 -1.70 9.66 -39.64 -0.38 -2.08 16 8 C -0.15 -2.19 5.01 -104.51 -0.52 -2.71 16 9 C 0.15 1.75 3.83 -27.88 -0.11 1.65 16 10 H 0.10 1.13 8.05 -51.93 -0.42 0.72 16 11 C -0.18 -1.76 9.52 37.16 0.35 -1.41 16 12 O -0.56 -6.81 13.14 -35.23 -0.46 -7.27 16 13 C -0.11 -1.60 9.31 -39.64 -0.37 -1.97 16 14 C -0.13 -2.31 9.42 -39.18 -0.37 -2.67 16 15 C -0.12 -2.88 9.38 -39.55 -0.37 -3.25 16 16 C -0.14 -3.56 8.73 -39.00 -0.34 -3.90 16 17 C 0.07 1.88 5.58 -106.64 -0.59 1.28 16 18 C -0.43 -10.38 8.14 -37.85 -0.31 -10.69 16 19 H 0.09 2.05 6.86 -52.48 -0.36 1.69 16 20 C 0.07 1.63 5.19 -17.32 -0.09 1.54 16 21 N -0.78 -18.44 10.95 55.55 0.61 -17.83 16 22 Si 0.91 16.98 29.59 -169.99 -5.03 11.95 16 23 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 24 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 25 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.33 6.76 -51.93 -0.35 0.98 16 29 H 0.13 2.45 7.52 -52.49 -0.39 2.05 16 30 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.37 3.35 7.38 45.56 0.34 3.68 16 35 H 0.11 1.28 6.60 -52.48 -0.35 0.93 16 36 H 0.12 1.98 6.15 -52.49 -0.32 1.66 16 37 H 0.10 2.05 6.15 -52.49 -0.32 1.73 16 38 H 0.13 3.16 6.26 -52.49 -0.33 2.83 16 39 H 0.29 6.12 8.29 -40.82 -0.34 5.79 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -27.78 325.49 -9.08 -36.86 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -4.18 Total: 11.22 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -4.87 Total: -28.95 kcal Atomic # 7 Polarization: -29.27 SS G_CDS: 0.56 Total: -28.71 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.46 Total: -7.27 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.78 -9.08 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242645916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.321 kcal (2) G-P(sol) polarization free energy of solvation -27.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds