Wall clock time and date at job start Tue Mar 31 2020 05:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37961 * 120.07447 * 2 1 4 4 C 1.38367 * 120.14302 * 180.28143 * 3 2 1 5 5 C 1.38413 * 120.29605 * 359.73888 * 4 3 2 6 6 C 1.50699 * 119.92642 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.47118 * 269.97845 * 6 5 4 8 8 C 1.37914 * 120.14179 * 0.02562 * 5 4 3 9 9 C 1.39587 * 120.07312 * 179.76703 * 2 1 3 10 10 C 1.47967 * 120.14711 * 359.97438 * 9 2 1 11 11 C 1.39888 * 119.45055 * 173.31649 * 10 9 2 12 12 C 1.36616 * 119.46519 * 180.02562 * 11 10 9 13 13 C 1.41301 * 118.41104 * 359.97438 * 12 11 10 14 14 C 1.41054 * 120.55035 * 179.72378 * 13 12 11 15 15 H 1.07998 * 119.99755 * 151.79100 * 14 13 12 16 16 C 1.40027 * 120.00239 * 331.79781 * 14 13 12 17 17 N 1.30796 * 119.99990 * 349.34145 * 16 14 13 18 18 Si 1.86798 * 120.00263 * 169.34255 * 16 14 13 19 19 H 1.48500 * 109.46833 * 89.99812 * 18 16 14 20 20 H 1.48496 * 109.47157 * 209.99744 * 18 16 14 21 21 H 1.48505 * 109.47110 * 330.00136 * 18 16 14 22 22 C 1.40945 * 118.89447 * 0.02562 * 13 12 11 23 23 C 1.50701 * 119.79983 * 179.97438 * 22 13 12 24 24 N 1.31260 * 120.40161 * 359.97438 * 22 13 12 25 25 H 1.09006 * 109.47279 * 263.28863 * 1 2 3 26 26 H 1.09000 * 109.47064 * 23.28557 * 1 2 3 27 27 H 1.08995 * 109.47149 * 143.29252 * 1 2 3 28 28 H 1.07997 * 119.93002 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.85445 * 179.72342 * 4 3 2 30 30 H 1.08998 * 109.47183 * 29.98022 * 6 5 4 31 31 H 1.09003 * 109.46579 * 149.98175 * 6 5 4 32 32 H 0.96694 * 114.00095 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.06808 * 180.02562 * 8 5 4 34 34 H 1.08004 * 120.26782 * 0.02562 * 11 10 9 35 35 H 1.08004 * 120.79053 * 179.97438 * 12 11 10 36 36 H 0.96997 * 119.99889 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47095 * 89.99601 * 23 22 13 38 38 H 1.08998 * 109.47450 * 209.99977 * 23 22 13 39 39 H 1.09002 * 109.46981 * 330.00497 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5820 1.1955 -0.0059 5 6 4.2817 0.0013 -0.0063 6 6 5.7886 0.0128 -0.0122 7 8 6.2597 0.0134 -1.3613 8 6 3.6027 -1.1991 -0.0015 9 6 2.2065 -1.2080 0.0049 10 6 1.4716 -2.4922 0.0107 11 6 2.1800 -3.6907 -0.1262 12 6 1.5017 -4.8765 -0.1214 13 6 0.0965 -4.8467 0.0236 14 6 -0.6494 -6.0439 0.0288 15 1 -1.5847 -6.0951 0.5663 16 6 -0.1770 -7.1661 -0.6629 17 7 0.8379 -7.0514 -1.4798 18 14 -0.9964 -8.8270 -0.4188 19 1 -2.0928 -8.9880 -1.4073 20 1 0.0055 -9.9061 -0.6106 21 1 -1.5533 -8.9070 0.9555 22 6 -0.5482 -3.6004 0.1566 23 6 -2.0461 -3.5448 0.3120 24 7 0.1483 -2.4878 0.1460 25 1 -0.3634 -0.1201 1.0207 26 1 -0.3633 0.9440 -0.4063 27 1 -0.3633 -0.8238 -0.6142 28 1 1.6584 2.1292 0.0004 29 1 4.1185 2.1329 -0.0104 30 1 6.1471 0.9067 0.4983 31 1 6.1607 -0.8733 0.5022 32 1 7.2233 0.0202 -1.4414 33 1 4.1499 -2.1303 -0.0014 34 1 3.2545 -3.6785 -0.2348 35 1 2.0270 -5.8144 -0.2260 36 1 1.1653 -7.8288 -1.9587 37 1 -2.3035 -3.5867 1.3703 38 1 -2.4217 -2.6157 -0.1168 39 1 -2.4967 -4.3919 -0.2052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242666988.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:02 Heat of formation + Delta-G solvation = -7.267556 kcal Electronic energy + Delta-G solvation = -21333.623027 eV Core-core repulsion = 18205.230930 eV Total energy + Delta-G solvation = -3128.392097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.44784 -38.18150 -36.52860 -34.33356 -32.63004 -32.32774 -30.76232 -29.69015 -27.94906 -26.93643 -25.16962 -23.96118 -22.64489 -21.43359 -19.98109 -19.65912 -17.47552 -17.38388 -15.98098 -15.63636 -15.27630 -14.89958 -14.46077 -14.09460 -13.65630 -13.58712 -13.36460 -13.06214 -12.76262 -12.62936 -11.96543 -11.84565 -11.78494 -11.62396 -11.48886 -11.35427 -11.21067 -11.08336 -10.83030 -10.74711 -10.47890 -10.46013 -10.01706 -9.78703 -9.54645 -8.59791 -8.28507 -8.17411 -7.84677 -7.19111 -6.92546 -4.57082 1.57004 1.82399 2.65150 2.89715 2.94257 2.98307 3.13178 3.74075 4.09506 4.52941 4.72431 5.06908 5.16348 5.34831 5.45822 5.48018 5.54008 5.54738 5.79511 5.95864 6.03238 6.20002 6.29039 6.40464 6.46676 6.54578 6.59077 6.61173 6.65023 6.80817 6.83701 6.91424 6.99100 6.99810 7.14521 7.30866 7.37760 7.46245 7.64550 7.69144 7.82540 7.88435 8.30569 8.52222 8.60945 9.51698 9.92236 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.004369 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.615358 B = 6406.841622 C = 7494.901964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.068 4.068 3 C -0.127 4.127 4 C -0.123 4.123 5 C -0.104 4.104 6 C 0.122 3.878 7 O -0.567 6.567 8 C -0.105 4.105 9 C 0.009 3.991 10 C 0.006 3.994 11 C -0.128 4.128 12 C -0.135 4.135 13 C 0.073 3.927 14 C -0.433 4.433 15 H 0.087 0.913 16 C 0.070 3.930 17 N -0.785 5.785 18 Si 0.916 3.084 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.258 1.258 22 C 0.005 3.995 23 C -0.071 4.071 24 N -0.440 5.440 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.374 0.626 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.286 0.714 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.860 7.098 2.434 8.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.069 4.069 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.105 4.105 6 C 0.045 3.955 7 O -0.372 6.372 8 C -0.125 4.125 9 C 0.009 3.991 10 C -0.128 4.128 11 C -0.149 4.149 12 C -0.160 4.160 13 C 0.069 3.931 14 C -0.462 4.462 15 H 0.105 0.895 16 C -0.150 4.150 17 N -0.409 5.409 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.139 4.139 23 C -0.129 4.129 24 N -0.149 5.149 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.220 0.780 33 H 0.138 0.862 34 H 0.118 0.882 35 H 0.146 0.854 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.945 7.713 2.226 8.945 hybrid contribution 0.999 -1.621 0.018 1.904 sum 4.944 6.093 2.243 8.160 Atomic orbital electron populations 1.21041 0.90521 1.01421 1.03036 1.20105 0.96838 0.91721 0.98232 1.20880 0.93817 0.97273 1.02573 1.20804 0.94080 0.96708 1.02569 1.19302 0.93548 0.93530 1.04070 1.20947 0.91438 0.99768 0.83338 1.86628 1.26139 1.97685 1.26743 1.21021 0.93434 0.97077 1.00929 1.18552 0.91707 0.91878 0.97001 1.18757 0.89531 0.90581 1.13957 1.21307 0.98759 0.93477 1.01333 1.21371 0.94202 0.97040 1.03361 1.18427 0.92438 0.93063 0.89198 1.19661 1.06163 0.94369 1.26041 0.89455 1.26074 0.94395 1.01413 0.93069 1.69757 1.20692 1.32486 1.17931 0.86166 0.79670 0.79945 0.80251 1.19147 1.19914 1.18194 1.21127 0.95145 0.88216 1.09439 1.20260 0.91164 1.01174 1.00289 1.67053 1.06857 1.30526 1.10421 0.91764 0.94645 0.87810 0.86700 0.87072 0.93284 0.93078 0.78000 0.86217 0.88171 0.85409 0.90323 0.93307 0.93132 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.90 8.56 36.00 0.31 -1.59 16 2 C -0.07 -1.31 5.91 -104.22 -0.62 -1.92 16 3 C -0.13 -2.11 9.66 -39.64 -0.38 -2.50 16 4 C -0.12 -1.94 9.70 -39.47 -0.38 -2.33 16 5 C -0.10 -1.73 5.50 -104.68 -0.58 -2.30 16 6 C 0.12 1.58 7.17 36.00 0.26 1.83 16 7 O -0.57 -7.52 13.64 -35.23 -0.48 -8.00 16 8 C -0.11 -1.98 9.05 -39.18 -0.35 -2.34 16 9 C 0.01 0.20 5.87 -104.89 -0.62 -0.42 16 10 C 0.01 0.13 6.67 -82.75 -0.55 -0.42 16 11 C -0.13 -3.02 9.37 -39.55 -0.37 -3.39 16 12 C -0.13 -3.39 8.70 -39.00 -0.34 -3.72 16 13 C 0.07 1.86 5.57 -106.64 -0.59 1.27 16 14 C -0.43 -10.55 8.07 -37.84 -0.31 -10.86 16 15 H 0.09 2.00 6.96 -52.49 -0.37 1.63 16 16 C 0.07 1.63 5.28 -17.32 -0.09 1.53 16 17 N -0.78 -19.02 10.83 55.55 0.60 -18.42 16 18 Si 0.92 17.29 29.57 -169.99 -5.03 12.26 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 21 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 22 C 0.01 0.13 6.86 -81.81 -0.56 -0.43 16 23 C -0.07 -1.43 9.59 36.01 0.35 -1.08 16 24 N -0.44 -10.39 6.09 -5.39 -0.03 -10.42 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.03 0.55 8.04 -51.93 -0.42 0.13 16 27 H 0.10 2.15 5.66 -51.93 -0.29 1.85 16 28 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 30 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.37 2.84 9.12 45.56 0.42 3.25 16 33 H 0.12 2.15 6.20 -52.48 -0.33 1.82 16 34 H 0.10 2.11 6.20 -52.48 -0.33 1.79 16 35 H 0.13 3.25 6.28 -52.48 -0.33 2.92 16 36 H 0.29 6.28 8.29 -40.82 -0.34 5.95 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.32 6.81 -51.93 -0.35 0.96 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -28.56 323.25 -8.98 -37.54 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.08 Total: 10.85 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -4.83 Total: -28.67 kcal Atomic # 7 Polarization: -29.41 SS G_CDS: 0.57 Total: -28.84 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.48 Total: -8.00 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.56 -8.98 -37.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242666988.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.269 kcal (2) G-P(sol) polarization free energy of solvation -28.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds