Wall clock time and date at job start Tue Mar 31 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38870 * 119.25152 * 2 1 4 4 C 1.36884 * 119.80270 * 179.97438 * 3 2 1 5 5 C 1.41122 * 118.39626 * 359.97438 * 4 3 2 6 6 C 1.40885 * 120.72335 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00120 * 153.47042 * 6 5 4 8 8 C 1.40075 * 119.99451 * 333.47191 * 6 5 4 9 9 N 1.30771 * 120.00426 * 344.36180 * 8 6 5 10 10 Si 1.86803 * 119.99529 * 164.36780 * 8 6 5 11 11 H 1.48496 * 109.47501 * 89.99950 * 10 8 6 12 12 H 1.48504 * 109.46860 * 209.99977 * 10 8 6 13 13 H 1.48505 * 109.47144 * 329.99416 * 10 8 6 14 14 C 1.41868 * 118.55828 * 0.02562 * 5 4 3 15 15 C 1.47820 * 119.98895 * 180.02562 * 14 5 4 16 16 C 1.39691 * 120.15278 * 308.48642 * 15 14 5 17 17 C 1.37892 * 119.84967 * 179.97438 * 16 15 14 18 18 C 1.50704 * 119.92813 * 179.97438 * 17 16 15 19 19 O 1.42907 * 109.46989 * 89.99022 * 18 17 16 20 20 C 1.38426 * 120.15151 * 359.97438 * 17 16 15 21 21 C 1.38373 * 120.30379 * 0.02562 * 20 17 16 22 22 C 1.37936 * 120.15470 * 359.74040 * 21 20 17 23 23 C 1.50699 * 120.08080 * 180.27620 * 22 21 20 24 24 N 1.31743 * 119.24595 * 179.72392 * 2 1 3 25 25 H 1.08998 * 109.47218 * 90.00261 * 1 2 3 26 26 H 1.08996 * 109.47106 * 330.00287 * 1 2 3 27 27 H 1.08994 * 109.47347 * 210.00062 * 1 2 3 28 28 H 1.08000 * 120.09471 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.80222 * 180.02562 * 4 3 2 30 30 H 0.96995 * 120.00183 * 180.02562 * 9 8 6 31 31 H 1.08008 * 120.07317 * 359.95677 * 16 15 14 32 32 H 1.08991 * 109.47213 * 209.99549 * 18 17 16 33 33 H 1.09003 * 109.46817 * 330.00141 * 18 17 16 34 34 H 0.96696 * 113.99903 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.84376 * 180.02562 * 20 17 16 36 36 H 1.07997 * 119.91969 * 179.97438 * 21 20 17 37 37 H 1.09007 * 109.47090 * 267.55702 * 23 22 21 38 38 H 1.08996 * 109.46917 * 27.55110 * 23 22 21 39 39 H 1.08998 * 109.47585 * 147.55616 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1855 1.2116 0.0000 4 6 3.5543 1.2248 0.0005 5 6 4.2373 -0.0101 0.0016 6 6 5.6455 -0.0538 0.0027 7 1 6.1590 -0.9067 0.4213 8 6 6.3795 1.0092 -0.5390 9 7 5.7894 1.8857 -1.3094 10 14 8.2014 1.1745 -0.1610 11 1 8.9878 0.4371 -1.1822 12 1 8.5833 2.6094 -0.1831 13 1 8.4814 0.6085 1.1832 14 6 3.4752 -1.2067 0.0016 15 6 4.1581 -2.5177 0.0033 16 6 5.1501 -2.7933 -0.9409 17 6 5.7835 -4.0182 -0.9333 18 6 6.8535 -4.3176 -1.9514 19 8 8.1263 -3.9235 -1.4347 20 6 5.4388 -4.9733 0.0075 21 6 4.4571 -4.7070 0.9456 22 6 3.8188 -3.4842 0.9525 23 6 2.7543 -3.1937 1.9788 24 7 2.1506 -1.1495 0.0055 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 0.8900 0.5138 27 1 -0.3634 -0.8899 0.5138 28 1 1.6349 2.1407 -0.0004 29 1 4.0984 2.1577 0.0010 30 1 6.2978 2.6216 -1.6848 31 1 5.4201 -2.0489 -1.6754 32 1 6.8631 -5.3864 -2.1648 33 1 6.6471 -3.7658 -2.8684 34 1 8.8637 -4.0877 -2.0383 35 1 5.9384 -5.9309 0.0092 36 1 4.1928 -5.4569 1.6764 37 1 1.7769 -3.4535 1.5721 38 1 2.9432 -3.7841 2.8754 39 1 2.7726 -2.1335 2.2313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242667228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:05 Heat of formation + Delta-G solvation = -16.262948 kcal Electronic energy + Delta-G solvation = -21978.451640 eV Core-core repulsion = 18849.669474 eV Total energy + Delta-G solvation = -3128.782166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.29398 -38.03493 -36.31506 -34.33913 -32.70874 -31.84670 -30.77138 -29.33965 -27.99249 -27.51062 -24.56890 -23.79684 -22.61973 -21.24309 -20.37002 -19.36235 -17.37005 -17.17101 -15.69466 -15.61598 -15.19818 -14.75686 -14.40065 -13.99356 -13.65971 -13.47153 -13.07198 -12.99132 -12.85775 -12.52713 -11.90892 -11.83015 -11.71400 -11.56055 -11.52786 -11.42995 -11.12427 -11.03461 -10.94069 -10.64422 -10.44450 -10.29654 -9.85307 -9.73695 -9.38425 -8.49522 -8.05497 -8.00249 -7.91270 -7.31357 -6.89535 -4.49004 1.84580 2.06206 2.61997 2.95477 3.01268 3.08328 3.17246 3.84635 4.28164 4.52564 4.87784 5.24991 5.36156 5.47738 5.52842 5.59091 5.62489 5.80504 5.84473 6.05789 6.08743 6.13809 6.31728 6.34509 6.41467 6.44118 6.51336 6.58419 6.73324 6.76520 6.92218 6.94463 7.03580 7.06280 7.14999 7.29824 7.49172 7.63448 7.69807 7.85623 7.88925 7.92777 8.39719 8.60470 8.67758 9.59193 9.97906 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.010584 B = 0.009234 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.972166 B = 3031.656906 C = 5115.463968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.014 4.014 3 C -0.142 4.142 4 C -0.130 4.130 5 C 0.084 3.916 6 C -0.434 4.434 7 H 0.088 0.912 8 C 0.076 3.924 9 N -0.786 5.786 10 Si 0.909 3.091 11 H -0.265 1.265 12 H -0.276 1.276 13 H -0.258 1.258 14 C 0.016 3.984 15 C 0.023 3.977 16 C -0.066 4.066 17 C -0.113 4.113 18 C 0.124 3.876 19 O -0.564 6.564 20 C -0.115 4.115 21 C -0.134 4.134 22 C -0.071 4.071 23 C -0.097 4.097 24 N -0.443 5.443 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.284 0.716 31 H 0.127 0.873 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.372 0.628 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -6.611 -0.063 6.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.156 4.156 3 C -0.162 4.162 4 C -0.156 4.156 5 C 0.079 3.921 6 C -0.463 4.463 7 H 0.106 0.894 8 C -0.143 4.143 9 N -0.410 5.410 10 Si 0.733 3.267 11 H -0.190 1.190 12 H -0.201 1.201 13 H -0.181 1.181 14 C -0.123 4.123 15 C 0.022 3.978 16 C -0.085 4.085 17 C -0.113 4.113 18 C 0.046 3.954 19 O -0.369 6.369 20 C -0.134 4.134 21 C -0.152 4.152 22 C -0.072 4.072 23 C -0.153 4.153 24 N -0.151 5.151 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.095 0.905 31 H 0.145 0.855 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.218 0.782 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.058 -6.969 0.308 6.976 hybrid contribution 1.708 0.944 -0.520 2.020 sum 1.765 -6.025 -0.212 6.282 Atomic orbital electron populations 1.20261 0.91631 1.00717 1.00390 1.20224 0.94765 0.88573 1.11994 1.21231 0.95390 0.97102 1.02504 1.21371 0.92613 0.98741 1.02855 1.18323 0.94055 0.90802 0.88887 1.19609 0.91003 1.03376 1.32319 0.89401 1.26000 1.01575 0.94193 0.92564 1.69765 1.38937 1.11172 1.21127 0.86264 0.81536 0.78139 0.80784 1.18976 1.20080 1.18139 1.19345 0.88304 0.91065 1.13537 1.18283 0.94268 0.91760 0.93521 1.21187 0.94560 0.94710 0.98028 1.19362 0.98119 0.95179 0.98687 1.20926 0.82442 0.97538 0.94449 1.86650 1.16295 1.87244 1.46735 1.20794 0.98221 0.98673 0.95667 1.20742 0.98126 0.96582 0.99762 1.20052 0.97321 0.93323 0.96463 1.20611 0.96997 1.02151 0.95572 1.66879 1.09514 1.29077 1.09644 0.93306 0.93033 0.92669 0.88482 0.85707 0.90462 0.85490 0.93547 0.93099 0.78235 0.87186 0.86887 0.91298 0.93343 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.00 0.37 -0.93 16 2 C -0.01 -0.32 6.79 -82.40 -0.56 -0.88 16 3 C -0.14 -3.25 9.64 -39.84 -0.38 -3.64 16 4 C -0.13 -3.27 8.73 -38.98 -0.34 -3.61 16 5 C 0.08 2.18 5.56 -106.41 -0.59 1.59 16 6 C -0.43 -11.11 7.22 -37.89 -0.27 -11.38 16 7 H 0.09 2.28 6.70 -52.49 -0.35 1.93 16 8 C 0.08 1.84 5.19 -17.31 -0.09 1.75 16 9 N -0.79 -19.32 11.00 55.55 0.61 -18.70 16 10 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 11 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 12 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 13 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 14 C 0.02 0.39 5.36 -82.23 -0.44 -0.05 16 15 C 0.02 0.51 5.01 -104.90 -0.53 -0.01 16 16 C -0.07 -1.43 7.69 -39.17 -0.30 -1.73 16 17 C -0.11 -2.11 5.50 -104.68 -0.58 -2.69 16 18 C 0.12 1.88 7.17 36.01 0.26 2.14 16 19 O -0.56 -8.88 13.64 -35.23 -0.48 -9.36 16 20 C -0.12 -1.98 9.70 -39.46 -0.38 -2.36 16 21 C -0.13 -2.36 9.68 -39.64 -0.38 -2.75 16 22 C -0.07 -1.43 5.91 -104.20 -0.62 -2.05 16 23 C -0.10 -1.79 8.91 36.00 0.32 -1.47 16 24 N -0.44 -10.66 8.90 -5.45 -0.05 -10.70 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 29 H 0.13 3.18 6.34 -52.49 -0.33 2.85 16 30 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 31 H 0.13 2.91 7.43 -52.48 -0.39 2.52 16 32 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.37 3.73 9.12 45.56 0.42 4.15 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 39 H 0.07 1.38 6.92 -51.93 -0.36 1.02 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -29.07 328.36 -8.89 -37.96 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -4.37 Total: 10.41 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -4.52 Total: -28.06 kcal Atomic # 7 Polarization: -29.97 SS G_CDS: 0.56 Total: -29.41 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.48 Total: -9.36 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.07 -8.89 -37.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242667228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.695 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds