Wall clock time and date at job start Tue Mar 31 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47378 * 2 1 4 4 C 1.37769 * 120.04258 * 99.65471 * 3 2 1 5 5 C 1.38953 * 120.08473 * 180.23013 * 4 3 2 6 6 O 1.35788 * 119.91412 * 179.76579 * 5 4 3 7 7 C 1.42899 * 117.00190 * 180.02562 * 6 5 4 8 8 C 1.38997 * 120.17803 * 359.78708 * 5 4 3 9 9 C 1.37734 * 120.08787 * 0.02562 * 8 5 4 10 10 C 1.39688 * 120.04259 * 279.44025 * 3 2 1 11 11 C 1.47846 * 120.08726 * 0.02794 * 10 3 2 12 12 C 1.39970 * 119.45155 * 180.17049 * 11 10 3 13 13 C 1.36556 * 119.46337 * 179.97438 * 12 11 10 14 14 C 1.41336 * 118.42037 * 0.28361 * 13 12 11 15 15 C 1.41027 * 120.54790 * 179.69710 * 14 13 12 16 16 H 1.07994 * 119.99583 * 202.46318 * 15 14 13 17 17 C 1.39990 * 120.00073 * 22.46269 * 15 14 13 18 18 N 1.30811 * 120.00217 * 19.39140 * 17 15 14 19 19 Si 1.86803 * 119.99894 * 199.38755 * 17 15 14 20 20 H 1.48493 * 109.47269 * 60.00368 * 19 17 15 21 21 H 1.48508 * 109.46776 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46899 * 299.99813 * 19 17 15 23 23 C 1.40956 * 118.89884 * 359.46997 * 14 13 12 24 24 N 1.31254 * 120.40648 * 0.53645 * 23 14 13 25 25 H 1.08998 * 109.47603 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46833 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46868 * 59.99669 * 1 2 3 28 28 H 1.09002 * 109.46833 * 239.99599 * 2 1 3 29 29 H 1.09000 * 109.46868 * 120.00330 * 2 1 3 30 30 H 1.07995 * 119.96128 * 0.02562 * 4 3 2 31 31 H 1.09001 * 109.47212 * 60.00253 * 7 6 5 32 32 H 1.09004 * 109.47258 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47186 * 299.99643 * 7 6 5 34 34 H 1.08006 * 119.95792 * 179.97438 * 8 5 4 35 35 H 1.08000 * 120.04469 * 179.97438 * 9 8 5 36 36 H 1.07997 * 120.27249 * 359.97438 * 12 11 10 37 37 H 1.08004 * 120.79436 * 180.02562 * 13 12 11 38 38 H 0.96996 * 120.00101 * 179.97438 * 18 17 15 39 39 H 1.08002 * 119.79399 * 180.22937 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4509 2.0044 1.1757 5 6 2.9098 3.3160 1.1775 6 8 3.3170 3.8893 2.3391 7 6 3.7765 5.2406 2.2695 8 6 2.9528 4.0428 -0.0065 9 6 2.5398 3.4652 -1.1867 10 6 2.0786 2.1463 -1.1928 11 6 1.6343 1.5224 -2.4574 12 6 1.6896 2.2603 -3.6455 13 6 1.2798 1.6841 -4.8138 14 6 0.8050 0.3533 -4.7772 15 6 0.3646 -0.2832 -5.9560 16 1 -0.3133 -1.1218 -5.8959 17 6 0.8061 0.1718 -7.2041 18 7 1.8851 0.9066 -7.2882 19 14 -0.1455 -0.2703 -8.7496 20 1 -1.5304 0.2554 -8.6455 21 1 0.5244 0.3290 -9.9317 22 1 -0.1865 -1.7470 -8.9001 23 6 0.7836 -0.3286 -3.5437 24 7 1.1884 0.2687 -2.4473 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.4192 1.4429 2.0977 31 1 2.9760 5.8777 1.8934 32 1 4.0704 5.5762 3.2641 33 1 4.6332 5.2990 1.5981 34 1 3.3098 5.0622 -0.0009 35 1 2.5731 4.0308 -2.1061 36 1 2.0534 3.2771 -3.6384 37 1 1.3136 2.2336 -5.7430 38 1 2.1912 1.2216 -8.1530 39 1 0.4271 -1.3471 -3.4998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242692448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:01 Heat of formation + Delta-G solvation = 11.382877 kcal Electronic energy + Delta-G solvation = -21368.246320 eV Core-core repulsion = 18240.662966 eV Total energy + Delta-G solvation = -3127.583353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.88238 -38.62539 -37.00874 -34.29788 -33.31491 -31.29890 -30.58265 -29.52270 -28.39882 -27.17073 -25.25477 -23.35841 -22.55434 -21.70513 -20.62750 -19.88648 -17.56972 -17.33088 -16.14962 -15.98924 -15.54444 -15.39078 -14.65832 -14.16848 -13.87278 -13.65530 -13.25445 -13.12801 -12.85786 -12.82918 -12.27636 -12.11394 -12.05147 -11.69254 -11.57355 -11.44843 -11.31831 -11.00210 -10.87198 -10.70862 -10.55900 -10.23724 -10.08602 -9.84849 -9.47818 -8.36727 -8.35344 -8.29605 -7.82346 -7.16948 -6.95596 -4.55899 1.61674 1.84557 2.66813 2.90794 2.92787 2.95268 3.14856 3.51264 3.71104 4.18095 4.59638 5.04648 5.18092 5.21432 5.28665 5.44783 5.46033 5.60094 5.70058 5.75317 5.91217 6.01741 6.13056 6.23123 6.31931 6.44496 6.49405 6.56765 6.66537 6.72769 6.76210 6.83169 6.93122 7.01236 7.06687 7.20294 7.29828 7.40590 7.62610 7.73653 7.84780 7.86863 8.29794 8.48757 8.60108 9.51587 9.84071 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.003898 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.954520 B = 7182.141888 C = 7955.727601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 C -0.035 4.035 4 C -0.150 4.150 5 C 0.096 3.904 6 O -0.324 6.324 7 C 0.031 3.969 8 C -0.208 4.208 9 C -0.094 4.094 10 C -0.017 4.017 11 C -0.002 4.002 12 C -0.124 4.124 13 C -0.145 4.145 14 C 0.069 3.931 15 C -0.435 4.435 16 H 0.086 0.914 17 C 0.073 3.927 18 N -0.774 5.774 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.024 4.024 24 N -0.435 5.435 25 H 0.045 0.955 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.042 0.958 30 H 0.121 0.879 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.287 0.713 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 4.865 8.261 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.118 4.118 3 C -0.036 4.036 4 C -0.168 4.168 5 C 0.052 3.948 6 O -0.238 6.238 7 C -0.065 4.065 8 C -0.227 4.227 9 C -0.113 4.113 10 C -0.018 4.018 11 C -0.135 4.135 12 C -0.144 4.144 13 C -0.170 4.170 14 C 0.064 3.936 15 C -0.464 4.464 16 H 0.104 0.896 17 C -0.148 4.148 18 N -0.397 5.397 19 Si 0.738 3.262 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.186 1.186 23 C -0.189 4.189 24 N -0.142 5.142 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.134 0.866 29 H 0.060 0.940 30 H 0.139 0.861 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.143 0.857 38 H 0.099 0.901 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.327 4.476 9.043 10.177 hybrid contribution -0.143 0.763 -1.816 1.975 sum 1.183 5.239 7.227 9.004 Atomic orbital electron populations 1.21514 0.95232 1.00548 1.00872 1.20786 0.96257 0.91915 1.02800 1.19839 0.96198 0.96624 0.90909 1.20166 1.05386 0.92747 0.98522 1.18970 0.98233 0.93093 0.84548 1.85977 1.79337 1.28094 1.30402 1.22936 0.98829 0.81618 1.03081 1.20950 1.08790 1.00282 0.92658 1.20953 0.98617 0.94570 0.97166 1.18498 0.98581 0.92606 0.92070 1.18724 1.11415 0.92414 0.90969 1.21279 1.00706 0.98850 0.93555 1.21310 1.03428 0.95164 0.97050 1.18584 0.89477 0.91857 0.93687 1.19638 1.23242 1.13521 0.89961 0.89556 1.26082 0.93765 0.93233 1.01702 1.69793 1.16784 1.25039 1.28127 0.86246 0.80703 0.80118 0.79143 1.18485 1.20077 1.18602 1.22505 1.08507 0.99105 0.88745 1.67240 1.07791 1.09060 1.30157 0.93555 0.94944 0.91566 0.86576 0.93950 0.86085 0.93031 0.88903 0.93003 0.86307 0.85945 0.88304 0.85713 0.90148 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 9.30 37.16 0.35 -1.81 16 2 C -0.08 -1.45 5.32 -27.88 -0.15 -1.60 16 3 C -0.03 -0.66 5.17 -104.25 -0.54 -1.19 16 4 C -0.15 -2.59 9.59 -39.49 -0.38 -2.97 16 5 C 0.10 1.59 6.70 -39.04 -0.26 1.33 16 6 O -0.32 -4.77 10.49 -19.08 -0.20 -4.97 16 7 C 0.03 0.31 9.81 101.05 0.99 1.30 16 8 C -0.21 -3.32 9.02 -39.48 -0.36 -3.68 16 9 C -0.09 -1.68 9.41 -39.21 -0.37 -2.05 16 10 C -0.02 -0.33 5.88 -104.87 -0.62 -0.95 16 11 C 0.00 -0.04 6.51 -82.75 -0.54 -0.58 16 12 C -0.12 -2.81 9.38 -39.54 -0.37 -3.19 16 13 C -0.14 -3.55 8.76 -39.01 -0.34 -3.89 16 14 C 0.07 1.71 5.60 -106.63 -0.60 1.11 16 15 C -0.44 -10.56 9.06 -37.87 -0.34 -10.90 16 16 H 0.09 1.97 7.92 -52.49 -0.42 1.56 16 17 C 0.07 1.68 5.14 -17.33 -0.09 1.59 16 18 N -0.77 -18.43 10.94 55.55 0.61 -17.83 16 19 Si 0.91 17.07 29.60 -169.99 -5.03 12.03 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 21 H -0.28 -5.04 7.11 56.52 0.40 -4.63 16 22 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 23 C -0.02 -0.57 10.97 -16.77 -0.18 -0.75 16 24 N -0.43 -9.87 4.27 -9.11 -0.04 -9.91 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 1.31 6.47 -51.93 -0.34 0.98 16 28 H 0.12 2.33 5.61 -51.93 -0.29 2.04 16 29 H 0.04 0.67 8.00 -51.93 -0.42 0.25 16 30 H 0.12 1.89 8.03 -52.49 -0.42 1.47 16 31 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 34 H 0.12 1.55 6.28 -52.48 -0.33 1.22 16 35 H 0.12 2.04 6.14 -52.49 -0.32 1.72 16 36 H 0.10 1.99 6.14 -52.49 -0.32 1.67 16 37 H 0.13 3.11 6.16 -52.48 -0.32 2.79 16 38 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 39 H 0.13 2.76 8.06 -52.49 -0.42 2.34 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -26.40 319.09 -8.45 -34.85 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.80 Total: 9.24 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -3.80 Total: -28.22 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.57 Total: -27.74 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.20 Total: -4.97 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.40 -8.45 -34.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242692448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.233 kcal (2) G-P(sol) polarization free energy of solvation -26.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds