Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47457 * 2 1 4 4 C 1.37898 * 120.02914 * 97.47528 * 3 2 1 5 5 C 1.38838 * 120.06192 * 179.77430 * 4 3 2 6 6 O 1.35848 * 119.93582 * 180.25524 * 5 4 3 7 7 C 1.42897 * 117.00260 * 180.25173 * 6 5 4 8 8 C 1.38879 * 120.13425 * 0.50695 * 5 4 3 9 9 C 1.37852 * 120.06486 * 359.75083 * 8 5 4 10 10 C 1.39390 * 120.03585 * 277.75571 * 3 2 1 11 11 C 1.48298 * 120.06732 * 359.95603 * 10 3 2 12 12 C 1.38950 * 119.61921 * 185.98302 * 11 10 3 13 13 C 1.40822 * 118.75668 * 179.97438 * 12 11 10 14 14 C 1.41533 * 120.98057 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00001 * 329.69033 * 14 13 12 16 16 C 1.40046 * 119.99593 * 149.69285 * 14 13 12 17 17 N 1.30741 * 119.99643 * 168.25574 * 16 14 13 18 18 Si 1.86793 * 120.00509 * 348.25285 * 16 14 13 19 19 H 1.48500 * 109.47165 * 92.60544 * 18 16 14 20 20 H 1.48498 * 109.47381 * 212.61180 * 18 16 14 21 21 H 1.48499 * 109.46962 * 332.60925 * 18 16 14 22 22 C 1.41157 * 118.03642 * 359.97438 * 13 12 11 23 23 C 1.37721 * 119.07919 * 0.02562 * 22 13 12 24 24 N 1.31943 * 121.16202 * 359.71809 * 23 22 13 25 25 H 1.09000 * 109.46909 * 59.99259 * 1 2 3 26 26 H 1.08999 * 109.46779 * 299.99856 * 1 2 3 27 27 H 1.09005 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47619 * 120.00508 * 2 1 3 29 29 H 1.09002 * 109.47432 * 240.00483 * 2 1 3 30 30 H 1.07997 * 119.97173 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.46915 * 299.99702 * 7 6 5 32 32 H 1.08993 * 109.47449 * 60.00197 * 7 6 5 33 33 H 1.09007 * 109.46853 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.96511 * 179.72165 * 8 5 4 35 35 H 1.08005 * 120.03442 * 179.97438 * 9 8 5 36 36 H 1.07992 * 120.61927 * 0.02562 * 12 11 10 37 37 H 0.97002 * 119.99547 * 180.02562 * 17 16 14 38 38 H 1.07993 * 120.46204 * 179.97438 * 22 13 12 39 39 H 1.07995 * 119.41740 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4089 2.0196 1.1837 5 6 2.8763 3.3270 1.1839 6 8 3.2514 3.9127 2.3508 7 6 3.7175 5.2616 2.2793 8 6 2.9562 4.0390 -0.0058 9 6 2.5762 3.4474 -1.1915 10 6 2.1115 2.1329 -1.1957 11 6 1.7024 1.4935 -2.4697 12 6 1.9012 2.1649 -3.6699 13 6 1.5065 1.5406 -4.8688 14 6 1.6865 2.1819 -6.1177 15 1 1.6531 3.2595 -6.1811 16 6 1.9079 1.4190 -7.2710 17 7 1.8456 1.9822 -8.4492 18 14 2.2921 -0.4033 -7.1261 19 1 1.0322 -1.1838 -7.2191 20 1 3.2060 -0.8054 -8.2253 21 1 2.9437 -0.6692 -5.8185 22 6 0.9260 0.2565 -4.7884 23 6 0.7689 -0.3308 -3.5526 24 7 1.1557 0.2832 -2.4507 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 2.3440 1.4699 2.1110 31 1 4.5937 5.3094 1.6327 32 1 2.9307 5.8968 1.8726 33 1 3.9841 5.6073 3.2781 34 1 3.3159 5.0573 -0.0019 35 1 2.6382 4.0018 -2.1164 36 1 2.3508 3.1467 -3.6829 37 1 1.9986 1.4537 -9.2481 38 1 0.6087 -0.2580 -5.6833 39 1 0.3258 -1.3134 -3.4847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242697063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = 15.239081 kcal Electronic energy + Delta-G solvation = -21513.588711 eV Core-core repulsion = 18386.172575 eV Total energy + Delta-G solvation = -3127.416136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.12149 -38.86648 -37.22464 -34.18466 -33.41689 -31.69869 -31.20447 -29.57555 -28.16044 -27.00326 -25.96935 -23.40684 -23.27157 -21.34512 -21.08974 -19.98332 -17.70281 -17.48505 -16.21514 -16.07442 -15.69465 -15.41473 -14.87460 -14.39183 -14.13553 -13.70518 -13.43722 -13.32342 -13.06843 -12.92112 -12.84816 -12.46090 -12.19384 -11.89813 -11.62822 -11.54631 -11.13172 -10.91315 -10.88021 -10.75517 -10.70009 -10.28793 -10.13571 -9.86014 -9.42324 -8.57415 -8.52634 -8.28941 -7.95191 -7.19116 -7.08210 -4.76983 1.35064 1.64988 2.49136 2.67794 3.02695 3.13433 3.22075 3.33550 3.85724 4.04661 4.56557 4.90541 5.02695 5.07711 5.08553 5.16324 5.33611 5.36815 5.50248 5.56201 5.70240 5.82257 5.94744 6.07107 6.13561 6.24391 6.32545 6.36717 6.42155 6.49474 6.51217 6.60809 6.83067 6.86803 6.91417 7.02850 7.07335 7.17130 7.30336 7.53957 7.58436 7.89397 8.16230 8.37766 8.60212 9.23194 9.93289 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.004615 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.587086 B = 6065.211986 C = 6993.733167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 C -0.010 4.010 4 C -0.160 4.160 5 C 0.120 3.880 6 O -0.322 6.322 7 C 0.029 3.971 8 C -0.218 4.218 9 C -0.064 4.064 10 C -0.060 4.060 11 C 0.168 3.832 12 C -0.240 4.240 13 C 0.111 3.889 14 C -0.438 4.438 15 H 0.094 0.906 16 C 0.084 3.916 17 N -0.803 5.803 18 Si 0.918 3.082 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.244 1.244 22 C -0.285 4.285 23 C 0.114 3.886 24 N -0.550 5.550 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.288 0.712 38 H 0.107 0.893 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 1.128 13.679 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.118 4.118 3 C -0.011 4.011 4 C -0.179 4.179 5 C 0.076 3.924 6 O -0.235 6.235 7 C -0.067 4.067 8 C -0.237 4.237 9 C -0.083 4.083 10 C -0.061 4.061 11 C 0.037 3.963 12 C -0.262 4.262 13 C 0.103 3.897 14 C -0.468 4.468 15 H 0.112 0.888 16 C -0.136 4.136 17 N -0.427 5.427 18 Si 0.745 3.255 19 H -0.194 1.194 20 H -0.219 1.219 21 H -0.167 1.167 22 C -0.308 4.308 23 C -0.039 4.039 24 N -0.266 5.266 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.132 0.868 30 H 0.143 0.857 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.842 0.681 14.385 14.518 hybrid contribution 0.335 0.114 -1.278 1.326 sum 2.177 0.795 13.107 13.310 Atomic orbital electron populations 1.21534 0.94814 1.00700 1.01092 1.20781 0.96601 0.91566 1.02819 1.19898 0.93987 0.96523 0.90723 1.20209 1.06214 0.92915 0.98571 1.19047 0.96065 0.92802 0.84524 1.86014 1.79499 1.28365 1.29666 1.22996 0.98936 0.81316 1.03409 1.21031 1.09482 1.00796 0.92348 1.21082 0.95564 0.94103 0.97582 1.18561 1.02015 0.93434 0.92064 1.19177 0.95499 0.91015 0.90618 1.21873 1.09727 1.02271 0.92340 1.17875 0.87590 0.90858 0.93414 1.19532 1.41373 0.96571 0.89371 0.88835 1.26191 0.91469 1.01618 0.94347 1.69603 1.34380 1.39641 0.99119 0.86229 0.78996 0.81121 0.79157 1.19447 1.21883 1.16735 1.21943 1.10974 1.00104 0.97768 1.21978 0.95626 0.97857 0.88476 1.67741 1.19137 1.09885 1.29814 0.91174 0.94932 0.93513 0.93678 0.86765 0.85667 0.92760 0.92766 0.88659 0.85768 0.85148 0.87160 0.90130 0.87581 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.30 37.16 0.35 -1.59 16 2 C -0.08 -1.31 5.31 -27.88 -0.15 -1.45 16 3 C -0.01 -0.18 5.16 -104.32 -0.54 -0.72 16 4 C -0.16 -2.51 9.60 -39.48 -0.38 -2.89 16 5 C 0.12 1.81 6.69 -39.12 -0.26 1.55 16 6 O -0.32 -4.31 10.49 -19.26 -0.20 -4.51 16 7 C 0.03 0.26 9.81 101.05 0.99 1.25 16 8 C -0.22 -3.19 9.02 -39.49 -0.36 -3.55 16 9 C -0.06 -1.08 9.40 -39.28 -0.37 -1.45 16 10 C -0.06 -1.12 5.87 -104.89 -0.62 -1.74 16 11 C 0.17 3.57 6.61 -83.04 -0.55 3.02 16 12 C -0.24 -5.44 9.24 -38.34 -0.35 -5.79 16 13 C 0.11 2.71 5.17 -106.56 -0.55 2.16 16 14 C -0.44 -11.42 9.67 -37.65 -0.36 -11.79 16 15 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 16 C 0.08 2.12 5.48 -17.34 -0.10 2.03 16 17 N -0.80 -20.68 13.92 55.55 0.77 -19.90 16 18 Si 0.92 20.15 24.41 -169.99 -4.15 16.00 16 19 H -0.27 -5.66 6.68 56.52 0.38 -5.28 16 20 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.24 -5.54 6.60 56.52 0.37 -5.16 16 22 C -0.29 -6.58 7.08 -38.66 -0.27 -6.86 16 23 C 0.11 2.40 11.15 -17.69 -0.20 2.20 16 24 N -0.55 -11.45 4.21 -9.95 -0.04 -11.49 16 25 H 0.07 1.26 6.49 -51.93 -0.34 0.92 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.64 8.03 -51.93 -0.42 0.22 16 29 H 0.11 2.07 5.67 -51.93 -0.29 1.78 16 30 H 0.13 1.75 8.05 -52.49 -0.42 1.33 16 31 H 0.05 0.45 7.65 -51.93 -0.40 0.06 16 32 H 0.05 0.45 7.65 -51.93 -0.40 0.06 16 33 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.12 1.47 6.28 -52.49 -0.33 1.14 16 35 H 0.13 2.08 6.21 -52.48 -0.33 1.75 16 36 H 0.11 2.33 6.22 -52.49 -0.33 2.01 16 37 H 0.29 6.70 8.29 -40.82 -0.34 6.36 16 38 H 0.11 2.41 4.36 -52.49 -0.23 2.18 16 39 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 313.44 15.07 4.72 4.72 Total: -1.00 -27.39 313.44 -7.39 -34.78 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.78 Total: 6.01 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -3.72 Total: -25.61 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.73 Total: -31.40 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.20 Total: -4.51 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.15 Total: 16.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.39 -7.39 -34.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242697063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.020 kcal (2) G-P(sol) polarization free energy of solvation -27.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds