Wall clock time and date at job start Tue Mar 31 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47278 * 2 1 4 4 C 1.37927 * 120.03120 * 257.94332 * 3 2 1 5 5 C 1.38816 * 120.06438 * 180.29590 * 4 3 2 6 6 O 1.35867 * 119.93948 * 179.69929 * 5 4 3 7 7 C 1.42906 * 117.00156 * 180.02562 * 6 5 4 8 8 C 1.38857 * 120.12534 * 359.73068 * 5 4 3 9 9 C 1.37888 * 120.06640 * 0.02562 * 8 5 4 10 10 C 1.39342 * 120.03168 * 77.71540 * 3 2 1 11 11 C 1.48385 * 120.06629 * 359.97278 * 10 3 2 12 12 C 1.39731 * 120.41328 * 236.45097 * 11 10 3 13 13 N 1.31903 * 121.14785 * 179.97438 * 12 11 10 14 14 C 1.31530 * 122.12130 * 0.02562 * 13 12 11 15 15 C 1.40772 * 120.66889 * 359.97438 * 14 13 12 16 16 C 1.41443 * 120.60266 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99987 * 156.82898 * 16 15 14 18 18 C 1.39933 * 119.99754 * 336.82596 * 16 15 14 19 19 N 1.30825 * 120.00255 * 332.69508 * 18 16 15 20 20 Si 1.86799 * 119.99541 * 152.69364 * 18 16 15 21 21 H 1.48505 * 109.47057 * 84.99879 * 20 18 16 22 22 H 1.48499 * 109.47118 * 204.99312 * 20 18 16 23 23 H 1.48502 * 109.47321 * 324.99840 * 20 18 16 24 24 C 1.39152 * 120.41124 * 56.42657 * 11 10 3 25 25 H 1.09003 * 109.47755 * 184.78672 * 1 2 3 26 26 H 1.09006 * 109.47335 * 304.79034 * 1 2 3 27 27 H 1.09006 * 109.47281 * 64.78767 * 1 2 3 28 28 H 1.09004 * 109.47151 * 239.99995 * 2 1 3 29 29 H 1.08995 * 109.47353 * 120.00664 * 2 1 3 30 30 H 1.08001 * 119.97279 * 0.02571 * 4 3 2 31 31 H 1.09002 * 109.46705 * 300.00363 * 7 6 5 32 32 H 1.09000 * 109.46957 * 59.99880 * 7 6 5 33 33 H 1.08998 * 109.47108 * 180.02562 * 7 6 5 34 34 H 1.08003 * 119.96725 * 180.02562 * 8 5 4 35 35 H 1.07995 * 120.03572 * 179.97438 * 9 8 5 36 36 H 1.07999 * 119.42100 * 359.69951 * 12 11 10 37 37 H 1.08001 * 119.66348 * 180.02562 * 14 13 12 38 38 H 0.96996 * 120.00033 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.94998 * 0.04639 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4976 1.9884 -1.1678 5 6 2.9662 3.2951 -1.1673 6 8 3.4296 3.8497 -2.3178 7 6 3.8974 5.1981 -2.2455 8 6 2.9629 4.0362 0.0070 9 6 2.4942 3.4757 1.1764 10 6 2.0228 2.1638 1.1787 11 6 1.5176 1.5579 2.4355 12 6 0.4778 2.1643 3.1451 13 7 0.0172 1.6379 4.2634 14 6 0.5068 0.5256 4.7664 15 6 1.5560 -0.1543 4.1193 16 6 2.0818 -1.3500 4.6618 17 1 2.5926 -2.0544 4.0220 18 6 1.9401 -1.6203 6.0274 19 7 1.8336 -0.6352 6.8817 20 14 1.9032 -3.3879 6.6307 21 1 3.2930 -3.8742 6.8238 22 1 1.1714 -3.4553 7.9211 23 1 1.2158 -4.2393 5.6267 24 6 2.0731 0.3783 2.9217 25 1 -0.3635 -1.0241 0.0858 26 1 -0.3634 0.5864 0.8440 27 1 -0.3634 0.4378 -0.9298 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.5014 1.4144 -2.0826 31 1 3.0866 5.8466 -1.9136 32 1 4.7240 5.2585 -1.5376 33 1 4.2379 5.5178 -3.2304 34 1 3.3277 5.0528 0.0044 35 1 2.4922 4.0524 2.0894 36 1 0.0467 3.0822 2.7737 37 1 0.0993 0.1295 5.6848 38 1 1.7351 -0.8226 7.8283 39 1 2.8780 -0.1143 2.3966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242699024.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:14 Heat of formation + Delta-G solvation = -3.675694 kcal Electronic energy + Delta-G solvation = -21422.375015 eV Core-core repulsion = 18294.138673 eV Total energy + Delta-G solvation = -3128.236342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.07348 -38.59987 -37.23091 -34.04916 -33.55050 -31.81279 -30.60476 -29.57314 -28.06865 -26.88398 -25.62491 -23.60949 -22.75082 -21.43771 -20.97303 -20.08959 -17.54640 -17.43549 -16.16720 -15.73759 -15.67291 -15.25303 -15.01723 -14.44376 -14.27785 -14.00195 -13.34823 -13.10062 -13.02751 -12.68481 -12.35585 -12.18814 -11.94508 -11.86197 -11.63821 -11.46028 -11.34791 -11.15137 -10.90179 -10.79520 -10.69186 -10.50750 -10.39183 -10.05699 -9.32153 -8.56142 -8.46735 -7.92830 -7.91110 -7.24333 -7.02007 -4.49841 1.57349 1.64486 2.64620 2.82543 3.00707 3.03171 3.17172 3.34114 3.82026 4.04640 4.50034 4.92379 5.02593 5.08035 5.16479 5.29000 5.36432 5.42642 5.55529 5.56325 5.76980 5.78962 5.87718 6.03897 6.08395 6.23824 6.31673 6.37126 6.51006 6.53474 6.66002 6.67982 6.69569 6.87419 6.98087 7.01182 7.14329 7.23148 7.55812 7.59748 7.69861 8.01453 8.26466 8.62884 8.67816 9.68737 9.96503 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026536 B = 0.004068 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.916816 B = 6880.679732 C = 7135.824061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C -0.032 4.032 4 C -0.151 4.151 5 C 0.112 3.888 6 O -0.322 6.322 7 C 0.029 3.971 8 C -0.212 4.212 9 C -0.071 4.071 10 C -0.048 4.048 11 C -0.066 4.066 12 C -0.033 4.033 13 N -0.473 5.473 14 C 0.037 3.963 15 C 0.069 3.931 16 C -0.458 4.458 17 H 0.083 0.917 18 C 0.083 3.917 19 N -0.774 5.774 20 Si 0.904 3.096 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.185 4.185 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.139 0.861 38 H 0.287 0.713 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 4.640 -11.499 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.032 4.032 4 C -0.170 4.170 5 C 0.068 3.932 6 O -0.236 6.236 7 C -0.066 4.066 8 C -0.231 4.231 9 C -0.089 4.089 10 C -0.049 4.049 11 C -0.068 4.068 12 C -0.188 4.188 13 N -0.180 5.180 14 C -0.127 4.127 15 C 0.065 3.935 16 C -0.487 4.487 17 H 0.101 0.899 18 C -0.138 4.138 19 N -0.398 5.398 20 Si 0.728 3.272 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.210 4.210 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.143 0.857 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.098 0.902 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.637 5.088 -11.028 12.255 hybrid contribution 0.917 -0.770 0.113 1.203 sum 2.554 4.318 -10.915 12.013 Atomic orbital electron populations 1.21667 0.94645 1.01745 1.01847 1.20719 0.96602 0.92242 1.03385 1.19761 0.95914 0.96098 0.91414 1.20149 1.05135 0.93065 0.98631 1.18962 0.96280 0.93049 0.84919 1.86015 1.77455 1.28887 1.31267 1.22982 0.98869 0.81430 1.03309 1.21066 1.08545 1.00567 0.92929 1.21026 0.96225 0.94423 0.97213 1.18779 0.99767 0.93291 0.93043 1.19170 0.97903 0.96289 0.93444 1.21720 1.00310 1.01820 0.94905 1.67060 1.28470 1.11670 1.10837 1.22765 0.95980 0.93022 1.00917 1.18384 0.91058 0.92793 0.91272 1.19467 1.32521 1.03511 0.93162 0.89892 1.25957 0.91797 0.99310 0.96782 1.69850 1.31690 1.34042 1.04186 0.86389 0.79488 0.82586 0.78787 1.19240 1.19894 1.18165 1.21242 1.02589 0.96771 1.00379 0.92656 0.91696 0.93443 0.91830 0.88851 0.85683 0.92848 0.92826 0.88681 0.85944 0.85729 0.86582 0.84362 0.90237 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.82 37.15 0.36 -1.86 16 2 C -0.09 -1.48 5.52 -27.89 -0.15 -1.64 16 3 C -0.03 -0.54 5.15 -104.33 -0.54 -1.07 16 4 C -0.15 -2.35 9.59 -39.48 -0.38 -2.73 16 5 C 0.11 1.69 6.69 -39.14 -0.26 1.43 16 6 O -0.32 -4.33 10.49 -19.32 -0.20 -4.54 16 7 C 0.03 0.27 9.81 101.05 0.99 1.26 16 8 C -0.21 -3.12 9.02 -39.48 -0.36 -3.47 16 9 C -0.07 -1.19 9.63 -39.28 -0.38 -1.57 16 10 C -0.05 -0.89 5.38 -104.88 -0.56 -1.46 16 11 C -0.07 -1.43 3.90 -104.82 -0.41 -1.84 16 12 C -0.03 -0.77 10.79 -16.96 -0.18 -0.95 16 13 N -0.47 -11.98 10.32 -12.28 -0.13 -12.11 16 14 C 0.04 0.98 9.94 -16.72 -0.17 0.81 16 15 C 0.07 1.77 5.57 -106.71 -0.59 1.18 16 16 C -0.46 -11.49 9.02 -37.73 -0.34 -11.83 16 17 H 0.08 1.99 7.98 -52.49 -0.42 1.57 16 18 C 0.08 1.97 4.92 -17.35 -0.09 1.89 16 19 N -0.77 -19.20 11.52 55.55 0.64 -18.56 16 20 Si 0.90 17.62 29.64 -169.99 -5.04 12.58 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 24 C -0.18 -4.31 7.78 -38.23 -0.30 -4.60 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.18 7.12 -51.93 -0.37 0.81 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.87 7.98 -51.93 -0.41 0.45 16 29 H 0.09 1.67 4.97 -51.93 -0.26 1.41 16 30 H 0.13 1.72 8.02 -52.49 -0.42 1.30 16 31 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 32 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.12 1.46 6.28 -52.48 -0.33 1.13 16 35 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 36 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 37 H 0.14 3.69 6.44 -52.49 -0.34 3.35 16 38 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 39 H 0.10 2.30 7.05 -52.49 -0.37 1.93 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -27.65 325.79 -8.13 -35.78 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.96 Total: 8.40 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -3.35 Total: -26.46 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.51 Total: -30.67 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.20 Total: -4.54 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.04 Total: 12.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.65 -8.13 -35.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242699024.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.103 kcal (2) G-P(sol) polarization free energy of solvation -27.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds