Wall clock time and date at job start Tue Mar 31 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47069 * 2 1 4 4 C 1.37905 * 120.02964 * 265.05315 * 3 2 1 5 5 C 1.38832 * 120.06385 * 179.97438 * 4 3 2 6 6 O 1.35855 * 119.93441 * 179.97438 * 5 4 3 7 7 C 1.42904 * 116.99919 * 179.97438 * 6 5 4 8 8 C 1.38874 * 120.13166 * 359.95317 * 5 4 3 9 9 C 1.37865 * 120.06709 * 359.76958 * 8 5 4 10 10 C 1.39381 * 120.03751 * 85.02851 * 3 2 1 11 11 C 1.48325 * 120.06090 * 0.02562 * 10 3 2 12 12 C 1.40065 * 120.82467 * 236.68172 * 11 10 3 13 13 C 1.38481 * 119.42213 * 180.02562 * 12 11 10 14 14 N 1.31486 * 121.15062 * 0.02562 * 13 12 11 15 15 C 1.33660 * 121.79857 * 359.97438 * 14 13 12 16 16 C 1.41431 * 119.77633 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99887 * 185.28382 * 16 15 14 18 18 C 1.40031 * 120.00221 * 5.28463 * 16 15 14 19 19 N 1.30737 * 120.00084 * 184.66785 * 18 16 15 20 20 Si 1.86806 * 119.99874 * 4.67034 * 18 16 15 21 21 H 1.48496 * 109.47082 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46925 * 299.99886 * 20 18 16 23 23 H 1.48501 * 109.47089 * 59.99719 * 20 18 16 24 24 C 1.39357 * 120.82374 * 56.96791 * 11 10 3 25 25 H 1.09001 * 109.47546 * 304.97444 * 1 2 3 26 26 H 1.08994 * 109.47233 * 64.97804 * 1 2 3 27 27 H 1.09004 * 109.46945 * 184.97669 * 1 2 3 28 28 H 1.08994 * 109.47409 * 239.99978 * 2 1 3 29 29 H 1.09007 * 109.47383 * 119.99579 * 2 1 3 30 30 H 1.08004 * 119.96825 * 359.97438 * 4 3 2 31 31 H 1.09000 * 109.46932 * 299.99996 * 7 6 5 32 32 H 1.08998 * 109.46779 * 59.99841 * 7 6 5 33 33 H 1.08999 * 109.46918 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.96685 * 180.02562 * 8 5 4 35 35 H 1.07993 * 120.03427 * 180.25157 * 9 8 5 36 36 H 1.07999 * 120.29062 * 0.02562 * 12 11 10 37 37 H 1.08000 * 119.42213 * 180.02562 * 13 12 11 38 38 H 0.96993 * 120.00166 * 354.98159 * 19 18 16 39 39 H 1.07993 * 120.58595 * 359.96605 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3594 2.0372 -1.1895 5 6 2.8217 3.3463 -1.1904 6 8 3.1437 3.9508 -2.3636 7 6 3.6124 5.2988 -2.2917 8 6 2.9553 4.0392 0.0057 9 6 2.6244 3.4302 1.1975 10 6 2.1662 2.1135 1.2021 11 6 1.8153 1.4533 2.4831 12 6 0.8651 2.0168 3.3442 13 6 0.5599 1.3760 4.5333 14 7 1.1469 0.2482 4.8683 15 6 2.0600 -0.3310 4.0826 16 6 2.6651 -1.5443 4.4854 17 1 3.4635 -1.9711 3.8964 18 6 2.2290 -2.1921 5.6477 19 7 2.8476 -3.2637 6.0700 20 14 0.7634 -1.5253 6.5948 21 1 0.5054 -2.3854 7.7775 22 1 1.0530 -0.1397 7.0435 23 1 -0.4335 -1.5210 5.7158 24 6 2.4270 0.2601 2.8626 25 1 -0.3634 0.5891 0.8421 26 1 -0.3633 0.4346 -0.9312 27 1 -0.3633 -1.0238 0.0892 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.2558 1.5010 -2.1213 31 1 2.8447 5.9268 -1.8397 32 1 4.5169 5.3370 -1.6846 33 1 3.8328 5.6609 -3.2959 34 1 3.3148 5.0577 0.0019 35 1 2.7246 3.9710 2.1269 36 1 0.3747 2.9430 3.0831 37 1 -0.1731 1.8103 5.1970 38 1 3.5614 -3.6520 5.5405 39 1 3.1675 -0.2038 2.2280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242701228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:35 Heat of formation + Delta-G solvation = -8.839084 kcal Electronic energy + Delta-G solvation = -21512.183255 eV Core-core repulsion = 18383.723011 eV Total energy + Delta-G solvation = -3128.460243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.21390 -38.83786 -37.48047 -33.85805 -33.66744 -32.24829 -30.41720 -29.90011 -28.46409 -27.17753 -25.55648 -23.77646 -22.96293 -21.69042 -20.89294 -20.14338 -18.26137 -17.64598 -16.30866 -16.09278 -15.79706 -15.03169 -14.86501 -14.48377 -14.38017 -13.86604 -13.49177 -13.11669 -13.02755 -12.99250 -12.72219 -12.42568 -12.34045 -12.16311 -11.90855 -11.59045 -11.19683 -11.09791 -10.75240 -10.66709 -10.59436 -10.43695 -10.01626 -9.63097 -9.29471 -8.75239 -8.66805 -7.99794 -7.70254 -7.67351 -7.24432 -4.81206 1.41358 1.49783 2.52270 2.54886 3.22859 3.62187 3.67096 3.90085 4.03491 4.45047 4.60336 4.81599 4.89748 4.99018 5.04925 5.11356 5.25765 5.31408 5.39001 5.46445 5.61480 5.67796 5.70642 5.73421 5.91497 6.11824 6.17013 6.22200 6.31173 6.38245 6.42734 6.50569 6.52076 6.58317 6.82744 6.89935 6.96815 7.20459 7.36987 7.42494 7.45737 7.64253 8.04663 8.26173 8.60938 9.45380 9.98713 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028461 B = 0.004293 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.578991 B = 6520.375809 C = 6750.605329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 C -0.026 4.026 4 C -0.152 4.152 5 C 0.118 3.882 6 O -0.321 6.321 7 C 0.029 3.971 8 C -0.214 4.214 9 C -0.066 4.066 10 C -0.062 4.062 11 C 0.027 3.973 12 C -0.303 4.303 13 C 0.152 3.848 14 N -0.575 5.575 15 C 0.251 3.749 16 C -0.473 4.473 17 H 0.081 0.919 18 C 0.043 3.957 19 N -0.804 5.804 20 Si 1.155 2.845 21 H -0.334 1.334 22 H -0.278 1.278 23 H -0.293 1.293 24 C -0.245 4.245 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.127 0.873 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.283 0.717 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 12.024 -12.689 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.026 4.026 4 C -0.170 4.170 5 C 0.073 3.927 6 O -0.235 6.235 7 C -0.066 4.066 8 C -0.233 4.233 9 C -0.084 4.084 10 C -0.062 4.062 11 C 0.021 3.979 12 C -0.326 4.326 13 C -0.009 4.009 14 N -0.294 5.294 15 C 0.129 3.871 16 C -0.505 4.505 17 H 0.099 0.901 18 C -0.178 4.178 19 N -0.425 5.425 20 Si 0.990 3.010 21 H -0.267 1.267 22 H -0.205 1.205 23 H -0.222 1.222 24 C -0.267 4.267 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.145 0.855 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.881 11.204 -10.824 15.691 hybrid contribution 1.504 0.986 -2.260 2.888 sum -0.377 12.189 -13.084 17.886 Atomic orbital electron populations 1.21648 0.94587 1.01862 1.01666 1.20810 0.96612 0.92204 1.03981 1.19758 0.95634 0.96089 0.91145 1.20158 1.05683 0.92784 0.98385 1.18996 0.96600 0.92630 0.84450 1.86025 1.80433 1.28138 1.28887 1.23002 0.98865 0.81243 1.03529 1.21072 1.09110 1.00853 0.92234 1.20982 0.96335 0.93756 0.97315 1.18789 1.01218 0.93551 0.92649 1.18562 0.94681 0.93549 0.91137 1.21144 1.08052 1.04395 0.99011 1.22021 0.94768 0.90822 0.93239 1.66545 1.15630 1.13338 1.33874 1.18572 0.88331 0.92383 0.87860 1.20791 1.16475 1.04050 1.09164 0.90124 1.27840 1.01428 0.92915 0.95603 1.70653 1.17808 1.17427 1.36630 0.81820 0.72498 0.73721 0.72986 1.26739 1.20519 1.22154 1.21633 1.06794 0.98333 0.99921 0.92069 0.93297 0.92444 0.91529 0.88496 0.85491 0.92795 0.92767 0.88558 0.85781 0.85645 0.87884 0.85469 0.90616 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.89 37.15 0.37 -1.73 16 2 C -0.10 -1.56 5.57 -27.88 -0.16 -1.71 16 3 C -0.03 -0.42 5.14 -104.32 -0.54 -0.96 16 4 C -0.15 -2.25 9.61 -39.48 -0.38 -2.63 16 5 C 0.12 1.68 6.69 -39.13 -0.26 1.42 16 6 O -0.32 -4.08 10.49 -19.28 -0.20 -4.29 16 7 C 0.03 0.24 9.81 101.05 0.99 1.23 16 8 C -0.21 -2.92 9.02 -39.48 -0.36 -3.28 16 9 C -0.07 -1.02 9.64 -39.28 -0.38 -1.40 16 10 C -0.06 -1.09 5.44 -104.88 -0.57 -1.66 16 11 C 0.03 0.54 4.74 -104.65 -0.50 0.04 16 12 C -0.30 -6.05 9.76 -38.81 -0.38 -6.43 16 13 C 0.15 3.27 11.17 -17.61 -0.20 3.08 16 14 N -0.57 -14.33 4.50 -11.21 -0.05 -14.38 16 15 C 0.25 6.41 6.40 -85.02 -0.54 5.87 16 16 C -0.47 -12.75 9.57 -37.70 -0.36 -13.11 16 17 H 0.08 2.17 8.05 -52.48 -0.42 1.75 16 18 C 0.04 1.17 5.52 -17.35 -0.10 1.08 16 19 N -0.80 -21.85 13.65 55.55 0.76 -21.10 16 20 Si 1.15 28.30 25.61 -169.99 -4.35 23.94 16 21 H -0.33 -8.11 7.11 56.52 0.40 -7.71 16 22 H -0.28 -6.76 6.61 56.52 0.37 -6.38 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C -0.24 -5.56 7.58 -38.33 -0.29 -5.85 16 25 H 0.06 1.02 7.97 -51.93 -0.41 0.60 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 29 H 0.10 1.75 4.76 -51.92 -0.25 1.50 16 30 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 31 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 32 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.12 1.35 6.28 -52.49 -0.33 1.02 16 35 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.13 2.33 8.06 -52.49 -0.42 1.90 16 38 H 0.28 7.34 8.72 -40.82 -0.36 6.99 16 39 H 0.11 2.34 7.23 -52.49 -0.38 1.96 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -29.03 323.64 -7.76 -36.78 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.15 Total: 0.20 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -3.64 Total: -26.04 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.71 Total: -35.47 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -0.20 Total: -4.29 kcal Atomic # 14 Polarization: 28.30 SS G_CDS: -4.35 Total: 23.94 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.03 -7.76 -36.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242701228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.945 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds