Wall clock time and date at job start Tue Mar 31 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35692 * 116.99949 * 2 1 4 4 C 1.38678 * 119.62208 * 180.25707 * 3 2 1 5 5 C 1.39730 * 118.94403 * 180.29075 * 4 3 2 6 6 C 1.48032 * 120.89897 * 179.73039 * 5 4 3 7 7 C 1.39924 * 119.87749 * 55.67369 * 6 5 4 8 8 C 1.36268 * 120.12425 * 180.02562 * 7 6 5 9 9 C 1.40937 * 119.87213 * 359.97438 * 8 7 6 10 10 C 1.41056 * 120.11572 * 180.27113 * 9 8 7 11 11 H 1.07997 * 119.99298 * 152.59069 * 10 9 8 12 12 C 1.40058 * 120.00214 * 332.59174 * 10 9 8 13 13 N 1.30762 * 119.99899 * 346.08111 * 12 10 9 14 14 Si 1.86796 * 120.00071 * 166.07902 * 12 10 9 15 15 H 1.48509 * 109.46914 * 59.99826 * 14 12 10 16 16 H 1.48496 * 109.47300 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47103 * 300.00299 * 14 12 10 18 18 C 1.40893 * 119.76198 * 0.02562 * 9 8 7 19 19 C 1.36302 * 119.87537 * 359.97438 * 18 9 8 20 20 C 1.50699 * 119.93544 * 179.97438 * 19 18 9 21 21 C 1.40141 * 118.20805 * 359.46125 * 5 4 3 22 22 C 1.37790 * 119.11947 * 0.26843 * 21 5 4 23 23 C 1.50703 * 119.50543 * 180.02562 * 22 21 5 24 24 N 1.32026 * 120.98503 * 0.02562 * 22 21 5 25 25 H 1.09000 * 109.47019 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47593 * 300.00312 * 1 2 3 27 27 H 1.08993 * 109.47411 * 60.00485 * 1 2 3 28 28 H 1.08002 * 120.52652 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.94063 * 0.02562 * 7 6 5 30 30 H 1.07998 * 120.06455 * 180.02562 * 8 7 6 31 31 H 0.97005 * 119.99531 * 180.02562 * 13 12 10 32 32 H 1.08000 * 120.06422 * 180.02562 * 18 9 8 33 33 H 1.09000 * 109.47009 * 92.72038 * 20 19 18 34 34 H 1.08999 * 109.46736 * 212.71536 * 20 19 18 35 35 H 1.08996 * 109.47310 * 332.71353 * 20 19 18 36 36 H 1.07997 * 120.43909 * 180.25047 * 21 5 4 37 37 H 1.08996 * 109.46924 * 90.00555 * 23 22 21 38 38 H 1.09006 * 109.47120 * 210.00292 * 23 22 21 39 39 H 1.09000 * 109.47013 * 330.00375 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4303 1.2725 -0.0054 5 6 4.0499 2.5249 0.0009 6 6 5.5255 2.6430 0.0014 7 6 6.2749 2.0217 -1.0037 8 6 7.6335 2.1267 -1.0077 9 6 8.2836 2.8633 0.0028 10 6 9.6893 2.9801 0.0003 11 1 10.1601 3.8427 0.4482 12 6 10.4744 1.9775 -0.5829 13 7 9.9429 0.8199 -0.8782 14 14 12.2805 2.2942 -0.9389 15 1 12.9867 2.6111 0.3285 16 1 12.8839 1.0836 -1.5518 17 1 12.4071 3.4394 -1.8757 18 6 7.5240 3.4869 1.0124 19 6 6.1656 3.3753 1.0067 20 6 5.3519 4.0413 2.0863 21 6 3.2367 3.6662 0.0008 22 6 1.8672 3.5139 0.0003 23 6 0.9845 4.7353 -0.0004 24 7 1.3169 2.3138 0.0003 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 4.0208 0.3682 -0.0100 29 1 5.7756 1.4578 -1.7778 30 1 8.2109 1.6471 -1.7842 31 1 10.4868 0.1254 -1.2818 32 1 8.0172 4.0529 1.7888 33 1 5.0475 5.0331 1.7522 34 1 4.4666 3.4411 2.2963 35 1 5.9529 4.1311 2.9911 36 1 3.6775 4.6521 0.0015 37 1 0.7721 5.0295 -1.0282 38 1 0.0501 4.5086 0.5131 39 1 1.4929 5.5512 0.5134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242748242.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:46 Heat of formation + Delta-G solvation = -1.949071 kcal Electronic energy + Delta-G solvation = -21186.921576 eV Core-core repulsion = 18058.760106 eV Total energy + Delta-G solvation = -3128.161470 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.28604 -38.25619 -37.35951 -34.36870 -32.67272 -31.72955 -31.15288 -29.39487 -28.06383 -26.38965 -25.87308 -25.43976 -22.40517 -21.99096 -20.37725 -19.75675 -17.64125 -17.02034 -16.37204 -15.79070 -15.52230 -15.37159 -14.51155 -14.16676 -13.99256 -13.77744 -13.63193 -13.17622 -12.79632 -12.57127 -12.28237 -12.23336 -12.04457 -11.95846 -11.67847 -11.55980 -11.41956 -11.13458 -11.03173 -10.81105 -10.71772 -10.35779 -9.91973 -9.62209 -9.38936 -9.23424 -8.92043 -8.05504 -7.55238 -7.26744 -6.88548 -4.49200 1.53306 1.64622 2.67876 2.98345 3.00097 3.01918 3.10339 3.36779 3.82654 4.14062 4.45606 4.52272 5.10469 5.31118 5.37727 5.48550 5.51774 5.55887 5.64774 5.68432 5.72853 5.75494 5.90113 5.92765 6.00539 6.22460 6.26869 6.31609 6.36668 6.52800 6.80566 6.81691 6.91850 6.95435 7.16622 7.23796 7.52211 7.55915 7.77528 7.93435 7.99168 8.14973 8.24148 8.49898 8.73647 8.83536 10.04290 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026913 B = 0.003869 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.127097 B = 7235.985621 C = 7910.828899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.312 6.312 3 C 0.318 3.682 4 C -0.202 4.202 5 C 0.095 3.905 6 C -0.210 4.210 7 C -0.070 4.070 8 C -0.169 4.169 9 C 0.123 3.877 10 C -0.453 4.453 11 H 0.080 0.920 12 C 0.074 3.926 13 N -0.785 5.785 14 Si 0.913 3.087 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.262 1.262 18 C -0.225 4.225 19 C -0.032 4.032 20 C -0.107 4.107 21 C -0.208 4.208 22 C 0.154 3.846 23 C -0.099 4.099 24 N -0.561 5.561 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.136 0.864 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.284 0.716 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.132 0.868 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.388 2.603 0.780 11.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.220 6.220 3 C 0.140 3.860 4 C -0.222 4.222 5 C 0.088 3.912 6 C -0.211 4.211 7 C -0.089 4.089 8 C -0.188 4.188 9 C 0.120 3.880 10 C -0.481 4.481 11 H 0.098 0.902 12 C -0.145 4.145 13 N -0.410 5.410 14 Si 0.737 3.263 15 H -0.189 1.189 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.245 4.245 19 C -0.032 4.032 20 C -0.164 4.164 21 C -0.228 4.228 22 C 0.019 3.981 23 C -0.156 4.156 24 N -0.286 5.286 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.154 0.846 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.149 0.851 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.123 2.010 0.692 12.308 hybrid contribution 1.508 0.021 -0.193 1.520 sum -10.615 2.031 0.499 10.819 Atomic orbital electron populations 1.22728 0.78163 1.02209 1.02053 1.86242 1.22182 1.25134 1.88427 1.19630 0.89162 0.84180 0.93068 1.21257 0.91179 0.99480 1.10327 1.19077 0.94007 0.90618 0.87477 1.17751 0.88308 1.12291 1.02798 1.20415 0.94311 0.97578 0.96600 1.21003 0.92432 1.04932 1.00461 1.17694 0.93165 0.88475 0.88684 1.19646 0.91435 1.05192 1.31875 0.90165 1.25993 1.01526 0.94117 0.92903 1.69773 1.38618 1.02856 1.29711 0.86290 0.81278 0.78959 0.79816 1.18863 1.20184 1.18682 1.20562 0.92430 1.10141 1.01321 1.19033 0.93731 0.95962 0.94465 1.20766 0.99023 0.99462 0.97108 1.21964 0.93075 0.99765 1.08000 1.20655 0.91912 0.91460 0.94081 1.20662 0.98872 0.93375 1.02694 1.66931 1.40990 0.98325 1.22400 0.89226 0.92720 0.92715 0.84620 0.89182 0.86210 0.90494 0.88631 0.92418 0.92879 0.92745 0.85053 0.90769 0.91037 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 101.05 1.05 1.57 16 2 O -0.31 -5.05 10.47 -18.78 -0.20 -5.25 16 3 C 0.32 5.63 7.48 -17.18 -0.13 5.50 16 4 C -0.20 -3.81 9.67 -38.86 -0.38 -4.19 16 5 C 0.10 1.84 4.49 -104.61 -0.47 1.37 16 6 C -0.21 -4.57 5.48 -104.64 -0.57 -5.14 16 7 C -0.07 -1.62 9.56 -39.66 -0.38 -2.00 16 8 C -0.17 -4.25 8.61 -39.27 -0.34 -4.59 16 9 C 0.12 3.14 5.56 -106.80 -0.59 2.55 16 10 C -0.45 -11.50 9.04 -37.83 -0.34 -11.84 16 11 H 0.08 1.94 7.89 -52.49 -0.41 1.53 16 12 C 0.07 1.78 5.20 -17.32 -0.09 1.69 16 13 N -0.79 -19.56 10.90 55.55 0.61 -18.96 16 14 Si 0.91 17.90 29.58 -169.99 -5.03 12.87 16 15 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 16 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 17 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 18 C -0.23 -5.31 9.35 -39.27 -0.37 -5.67 16 19 C -0.03 -0.68 5.85 -104.70 -0.61 -1.29 16 20 C -0.11 -1.88 8.61 36.00 0.31 -1.57 16 21 C -0.21 -3.50 7.95 -39.03 -0.31 -3.82 16 22 C 0.15 2.39 6.77 -82.67 -0.56 1.83 16 23 C -0.10 -1.11 10.16 36.01 0.37 -0.75 16 24 N -0.56 -9.41 9.10 -9.64 -0.09 -9.50 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.14 2.56 8.06 -52.49 -0.42 2.14 16 29 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 30 H 0.12 3.11 6.21 -52.49 -0.33 2.78 16 31 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 32 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.06 0.90 7.72 -51.93 -0.40 0.50 16 34 H 0.05 0.92 6.82 -51.93 -0.35 0.57 16 35 H 0.05 0.89 8.06 -51.93 -0.42 0.47 16 36 H 0.13 2.06 7.46 -52.49 -0.39 1.67 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -27.39 330.86 -8.37 -35.77 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.24 Total: 6.43 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -3.41 Total: -26.35 kcal Atomic # 7 Polarization: -28.97 SS G_CDS: 0.52 Total: -28.45 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.20 Total: -5.25 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.39 -8.37 -35.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242748242.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.817 kcal (2) G-P(sol) polarization free energy of solvation -27.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds