Wall clock time and date at job start Tue Mar 31 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35690 * 116.99525 * 2 1 4 4 C 1.38709 * 119.62290 * 179.97438 * 3 2 1 5 5 C 1.39506 * 118.96821 * 180.02562 * 4 3 2 6 6 C 1.48383 * 120.87303 * 180.02562 * 5 4 3 7 7 C 1.39366 * 120.11924 * 180.02562 * 6 5 4 8 8 C 1.37997 * 119.87601 * 179.97438 * 7 6 5 9 9 C 1.38341 * 120.12316 * 359.73762 * 8 7 6 10 10 C 1.38309 * 120.24117 * 0.51711 * 9 8 7 11 11 C 1.50698 * 119.93703 * 179.76302 * 10 9 8 12 12 C 1.50702 * 109.47462 * 269.72483 * 11 10 9 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 C 1.38033 * 120.12230 * 359.48618 * 10 9 8 21 21 C 1.39926 * 118.25624 * 0.26733 * 5 4 3 22 22 C 1.37828 * 119.14373 * 359.48270 * 21 5 4 23 23 C 1.50703 * 119.52061 * 180.22983 * 22 21 5 24 24 N 1.32018 * 120.95885 * 0.53589 * 22 21 5 25 25 H 1.09002 * 109.46926 * 60.00502 * 1 2 3 26 26 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47402 * 300.00294 * 1 2 3 28 28 H 1.08004 * 120.51791 * 0.02562 * 4 3 2 29 29 H 1.07999 * 120.06309 * 359.97438 * 7 6 5 30 30 H 1.07998 * 119.93900 * 179.97438 * 8 7 6 31 31 H 1.07998 * 119.88505 * 180.25728 * 9 8 7 32 32 H 1.09000 * 109.47438 * 149.72172 * 11 10 9 33 33 H 1.09001 * 109.47203 * 29.72226 * 11 10 9 34 34 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 35 35 H 1.07996 * 120.06151 * 180.23022 * 20 10 9 36 36 H 1.07992 * 120.42839 * 179.71230 * 21 5 4 37 37 H 1.08999 * 109.46976 * 270.29897 * 23 22 21 38 38 H 1.09002 * 109.47049 * 30.30127 * 23 22 21 39 39 H 1.09007 * 109.47210 * 150.29984 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 6 3.4306 1.2726 0.0005 5 6 4.0496 2.5229 0.0011 6 6 5.5288 2.6401 0.0011 7 6 6.1307 3.8971 0.0022 8 6 7.5068 4.0003 0.0027 9 6 8.2886 2.8590 0.0077 10 6 7.6965 1.6091 0.0013 11 6 8.5548 0.3704 0.0014 12 6 8.8416 -0.0422 -1.4194 13 1 8.4419 0.5347 -2.2403 14 6 9.6133 -1.1566 -1.6712 15 7 9.8590 -1.5198 -2.9111 16 14 10.3040 -2.1548 -0.2514 17 1 11.6410 -1.6264 0.1208 18 1 9.3901 -2.0548 0.9148 19 1 10.4301 -3.5766 -0.6609 20 6 6.3210 1.4941 0.0007 21 6 3.2390 3.6634 0.0068 22 6 1.8689 3.5132 0.0008 23 6 0.9878 4.7358 0.0016 24 7 1.3172 2.3138 0.0004 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 4.0211 0.3684 0.0005 29 1 5.5213 4.7887 0.0026 30 1 7.9742 4.9739 0.0031 31 1 9.3652 2.9443 0.0123 32 1 8.0301 -0.4353 0.5148 33 1 9.4931 0.5785 0.5157 34 1 10.3986 -2.3061 -3.0883 35 1 5.8598 0.5176 -0.0005 36 1 3.6811 4.6486 0.0121 37 1 0.7756 5.0300 1.0295 38 1 1.4973 5.5511 -0.5120 39 1 0.0532 4.5105 -0.5121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242748855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:51 Heat of formation + Delta-G solvation = 10.479835 kcal Electronic energy + Delta-G solvation = -20807.657213 eV Core-core repulsion = 17680.034701 eV Total energy + Delta-G solvation = -3127.622512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71380 -38.93550 -37.84934 -34.14958 -33.14142 -32.07440 -31.34317 -29.56285 -28.44156 -27.57293 -26.59026 -23.64716 -23.18798 -22.49139 -20.93237 -19.79588 -17.90827 -16.83896 -16.81211 -16.51911 -16.04667 -15.27589 -14.80984 -14.66118 -14.22610 -14.18481 -14.03730 -13.53186 -13.03385 -12.89678 -12.79347 -12.50202 -12.38547 -12.29922 -12.02896 -11.77538 -11.67448 -11.22409 -11.04962 -10.79489 -10.46630 -10.27794 -9.98278 -9.88234 -9.66089 -9.41430 -8.61612 -8.42255 -8.19882 -7.88739 -6.10532 -4.10423 0.77781 1.19503 1.92505 2.22006 3.06006 3.26331 3.34706 3.36998 3.75085 4.12652 4.38494 4.38686 4.54852 4.97528 5.03369 5.13659 5.20369 5.21518 5.21923 5.30487 5.33821 5.39721 5.41176 5.53332 5.56843 5.75055 5.80787 5.90843 5.93615 5.99350 6.26580 6.35191 6.47853 6.52120 6.83692 6.89361 6.95553 6.98363 7.23945 7.44852 7.47555 7.65583 7.87342 8.45244 8.94324 9.49260 11.02328 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.004166 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.529913 B = 6719.943826 C = 7942.771772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.307 6.307 3 C 0.327 3.673 4 C -0.192 4.192 5 C 0.055 3.945 6 C -0.071 4.071 7 C -0.121 4.121 8 C -0.124 4.124 9 C -0.106 4.106 10 C -0.030 4.030 11 C 0.013 3.987 12 C -0.516 4.516 13 H 0.074 0.926 14 C 0.070 3.930 15 N -0.898 5.898 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.264 1.264 19 H -0.286 1.286 20 C -0.095 4.095 21 C -0.207 4.207 22 C 0.163 3.837 23 C -0.101 4.101 24 N -0.550 5.550 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.147 0.853 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.029 0.971 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.939 10.792 7.959 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.214 6.214 3 C 0.149 3.851 4 C -0.212 4.212 5 C 0.048 3.952 6 C -0.071 4.071 7 C -0.139 4.139 8 C -0.142 4.142 9 C -0.124 4.124 10 C -0.031 4.031 11 C -0.024 4.024 12 C -0.554 4.554 13 H 0.092 0.908 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.704 3.296 17 H -0.201 1.201 18 H -0.189 1.189 19 H -0.212 1.212 20 C -0.113 4.113 21 C -0.227 4.227 22 C 0.028 3.972 23 C -0.159 4.159 24 N -0.275 5.275 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.164 0.836 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.142 0.858 36 H 0.155 0.845 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.665 10.294 7.841 21.099 hybrid contribution 1.122 -0.525 0.473 1.326 sum -15.543 9.768 8.315 20.153 Atomic orbital electron populations 1.22809 0.77561 1.02719 1.02218 1.86274 1.22647 1.24547 1.87933 1.19589 0.89053 0.84416 0.92080 1.21161 0.91888 0.99370 1.08792 1.18975 0.92852 0.91854 0.91507 1.18515 0.89868 0.94166 1.04516 1.20955 0.94806 0.95913 1.02206 1.20984 0.93442 0.98337 1.01446 1.21239 1.00126 0.91952 0.99131 1.20246 0.93593 0.96201 0.93012 1.18837 0.94110 0.90648 0.98778 1.20914 1.32363 1.11746 0.90327 0.90784 1.24991 0.95662 0.96978 0.95512 1.69898 1.38970 1.26037 1.18746 0.86815 0.79913 0.79648 0.83212 1.20134 1.18882 1.21182 1.21176 0.93455 0.97517 0.99162 1.21810 0.93527 0.99387 1.07974 1.20729 0.91735 0.91716 0.93052 1.20709 0.99099 0.93043 1.03023 1.67016 1.41028 0.98360 1.21146 0.92450 0.88797 0.92510 0.83576 0.86466 0.86371 0.85978 0.95274 0.95645 0.92538 0.85771 0.84461 0.90398 0.90494 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.38 101.05 1.05 1.48 16 2 O -0.31 -4.38 10.47 -18.77 -0.20 -4.58 16 3 C 0.33 4.97 7.48 -17.18 -0.13 4.84 16 4 C -0.19 -3.02 9.43 -38.93 -0.37 -3.38 16 5 C 0.06 0.85 5.91 -104.62 -0.62 0.23 16 6 C -0.07 -1.17 5.88 -104.90 -0.62 -1.79 16 7 C -0.12 -1.79 9.45 -39.25 -0.37 -2.16 16 8 C -0.12 -1.89 10.03 -39.63 -0.40 -2.28 16 9 C -0.11 -1.92 9.69 -39.52 -0.38 -2.30 16 10 C -0.03 -0.62 5.06 -104.67 -0.53 -1.15 16 11 C 0.01 0.31 4.17 -29.03 -0.12 0.19 16 12 C -0.52 -14.45 9.65 -34.44 -0.33 -14.78 16 13 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 16 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 C -0.09 -1.79 9.10 -39.25 -0.36 -2.15 16 21 C -0.21 -2.67 9.12 -39.10 -0.36 -3.02 16 22 C 0.16 2.04 6.77 -82.66 -0.56 1.48 16 23 C -0.10 -0.85 10.16 36.01 0.37 -0.49 16 24 N -0.55 -7.78 9.11 -9.63 -0.09 -7.87 16 25 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.15 2.28 6.34 -52.48 -0.33 1.94 16 29 H 0.12 1.37 6.30 -52.49 -0.33 1.04 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 33 H 0.03 0.58 7.51 -51.93 -0.39 0.19 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.12 2.29 6.30 -52.49 -0.33 1.96 16 36 H 0.14 1.43 6.34 -52.49 -0.33 1.10 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -31.87 330.54 -8.07 -39.94 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.05 Total: 1.01 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -3.82 Total: -23.37 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.69 Total: -34.45 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.20 Total: -4.58 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.87 -8.07 -39.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242748855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.423 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds