Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46860 * 2 1 4 4 C 1.38021 * 120.06694 * 267.74062 * 3 2 1 5 5 C 1.38312 * 120.12984 * 180.02562 * 4 3 2 6 6 C 1.38353 * 120.25314 * 0.25202 * 5 4 3 7 7 C 1.37987 * 120.12471 * 359.44373 * 6 5 4 8 8 C 1.50701 * 120.06053 * 180.27675 * 7 6 5 9 9 C 1.39377 * 120.06319 * 87.71210 * 3 2 1 10 10 C 1.48289 * 120.12704 * 0.05161 * 9 3 2 11 11 C 1.39427 * 119.65283 * 119.75613 * 10 9 3 12 12 C 1.38231 * 119.14426 * 179.74905 * 11 10 9 13 13 C 1.39420 * 118.45113 * 0.51265 * 12 11 10 14 14 O 1.35722 * 120.38587 * 179.72613 * 13 12 11 15 15 C 1.34813 * 116.99310 * 354.52743 * 14 13 12 16 16 H 1.07994 * 120.00398 * 355.68269 * 15 14 13 17 17 C 1.38656 * 119.99266 * 175.67963 * 15 14 13 18 18 N 1.31554 * 120.00501 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99806 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47161 * 89.99545 * 19 17 15 21 21 H 1.48502 * 109.47008 * 209.99964 * 19 17 15 22 22 H 1.48498 * 109.46807 * 329.99887 * 19 17 15 23 23 C 1.38966 * 119.23273 * 359.75244 * 13 12 11 24 24 N 1.31665 * 120.78319 * 359.97228 * 23 13 12 25 25 H 1.08999 * 109.46678 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47519 * 300.00188 * 1 2 3 27 27 H 1.09007 * 109.47001 * 60.00474 * 1 2 3 28 28 H 1.08997 * 109.47592 * 240.00238 * 2 1 3 29 29 H 1.09000 * 109.47333 * 119.99576 * 2 1 3 30 30 H 1.08001 * 119.93678 * 359.97374 * 4 3 2 31 31 H 1.07999 * 119.87014 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.93620 * 179.72656 * 6 5 4 33 33 H 1.09009 * 109.47199 * 269.58625 * 8 7 6 34 34 H 1.09001 * 109.47417 * 29.59192 * 8 7 6 35 35 H 1.09003 * 109.47005 * 149.59361 * 8 7 6 36 36 H 1.07996 * 120.42737 * 0.02562 * 11 10 9 37 37 H 1.07991 * 120.77267 * 180.25987 * 12 11 10 38 38 H 0.97003 * 120.00353 * 179.97438 * 18 17 15 39 39 H 1.08002 * 119.60709 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3072 2.0571 -1.1936 5 6 2.7687 3.3610 -1.1951 6 6 2.9625 4.0332 -0.0014 7 6 2.6851 3.4093 1.1977 8 6 2.8908 4.1450 2.4967 9 6 2.2196 2.0952 1.2053 10 6 1.9266 1.4169 2.4910 11 6 2.9439 1.2479 3.4293 12 6 2.6579 0.6188 4.6265 13 6 1.3575 0.1659 4.8447 14 8 1.0346 -0.4619 6.0038 15 6 2.0425 -0.7200 6.8612 16 1 3.0606 -0.4925 6.5820 17 6 1.7717 -1.2774 8.1016 18 7 0.5314 -1.5540 8.4420 19 14 3.1680 -1.6343 9.2901 20 1 3.4010 -0.4470 10.1510 21 1 2.8099 -2.7990 10.1390 22 1 4.4032 -1.9407 8.5248 23 6 0.3957 0.3644 3.8614 24 7 0.7002 0.9725 2.7340 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.1624 1.5356 -2.1282 31 1 2.9829 3.8547 -2.1314 32 1 3.3273 5.0497 -0.0084 33 1 3.9047 3.9697 2.8570 34 1 2.7414 5.2128 2.3372 35 1 2.1754 3.7843 3.2358 36 1 3.9415 1.6078 3.2253 37 1 3.4248 0.4777 5.3735 38 1 0.3420 -1.9443 9.3096 39 1 -0.6134 0.0156 4.0239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242815970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = 16.282489 kcal Electronic energy + Delta-G solvation = -21484.601669 eV Core-core repulsion = 18357.230779 eV Total energy + Delta-G solvation = -3127.370890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.11463 -38.91166 -37.05609 -34.30180 -32.79030 -32.28395 -31.27551 -30.03005 -28.21323 -26.73374 -25.58363 -23.69664 -22.72715 -22.56864 -20.63988 -20.04504 -18.17543 -17.29068 -16.41075 -15.78495 -15.34436 -15.06032 -14.60258 -14.16375 -13.95576 -13.69333 -13.61367 -13.38473 -13.23608 -12.88216 -12.54796 -12.44130 -12.20728 -12.00654 -11.85182 -11.71360 -11.58187 -11.29398 -11.14926 -10.88413 -10.59985 -10.49438 -10.44150 -9.81702 -9.11696 -8.95046 -8.84244 -8.40106 -8.38663 -7.36706 -6.62808 -4.20504 1.38005 1.55939 1.99928 2.20252 3.03890 3.04170 3.09355 3.82093 3.88811 4.49044 4.76520 4.93119 4.98339 5.02115 5.06884 5.14122 5.38040 5.42762 5.50238 5.65035 5.67432 5.75585 5.77215 5.81312 5.88457 5.91123 6.01532 6.09586 6.22114 6.22590 6.29575 6.45679 6.53286 6.62744 6.68317 6.80080 6.81542 6.95945 6.97733 7.15540 7.19542 7.46665 7.79469 8.72288 8.81931 9.46417 10.53696 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026546 B = 0.004080 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.531291 B = 6861.699479 C = 7461.582417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C -0.056 4.056 4 C -0.129 4.129 5 C -0.122 4.122 6 C -0.130 4.130 7 C -0.072 4.072 8 C -0.114 4.114 9 C -0.006 4.006 10 C 0.048 3.952 11 C -0.098 4.098 12 C -0.202 4.202 13 C 0.108 3.892 14 O -0.162 6.162 15 C -0.395 4.395 16 H 0.093 0.907 17 C 0.043 3.957 18 N -0.853 5.853 19 Si 0.943 3.057 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.266 1.266 23 C 0.028 3.972 24 N -0.423 5.423 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.136 0.864 38 H 0.274 0.726 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 6.859 -13.232 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.056 4.056 4 C -0.147 4.147 5 C -0.140 4.140 6 C -0.148 4.148 7 C -0.073 4.073 8 C -0.170 4.170 9 C -0.007 4.007 10 C -0.088 4.088 11 C -0.118 4.118 12 C -0.228 4.228 13 C 0.051 3.949 14 O -0.062 6.062 15 C -0.471 4.471 16 H 0.111 0.889 17 C -0.163 4.163 18 N -0.486 5.486 19 Si 0.767 3.233 20 H -0.197 1.197 21 H -0.200 1.200 22 H -0.190 1.190 23 C -0.135 4.135 24 N -0.132 5.132 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.084 0.916 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.011 6.770 -13.513 15.638 hybrid contribution 1.490 -0.269 1.235 1.954 sum 5.501 6.501 -12.278 14.943 Atomic orbital electron populations 1.21884 0.94210 1.01405 1.03328 1.20423 0.96994 0.92166 1.01790 1.19979 0.97326 0.96344 0.91996 1.20881 1.01475 0.95152 0.97173 1.21038 1.00413 0.94895 0.97639 1.20843 1.02277 0.99795 0.91889 1.19934 0.98673 0.93281 0.95373 1.20815 1.02394 0.99098 0.94708 1.18216 0.98871 0.92429 0.91150 1.18942 0.90075 1.05252 0.94494 1.21639 0.98915 0.97999 0.93225 1.21460 0.97604 1.04905 0.98835 1.20546 0.93567 0.91919 0.88905 1.83978 1.36047 1.63204 1.23008 1.21371 0.87233 1.42651 0.95817 0.88925 1.25341 0.98036 0.96135 0.96797 1.70028 1.18384 1.38460 1.21739 0.85678 0.79504 0.78567 0.79550 1.19677 1.20035 1.19044 1.21768 0.99158 1.03585 0.88970 1.67430 1.19561 1.07203 1.19018 0.93352 0.89177 0.93834 0.92262 0.91166 0.86489 0.86562 0.86434 0.91315 0.92002 0.91057 0.86520 0.84592 0.91645 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.73 37.16 0.36 -1.81 16 2 C -0.08 -1.12 5.40 -27.88 -0.15 -1.27 16 3 C -0.06 -0.84 5.16 -104.28 -0.54 -1.38 16 4 C -0.13 -1.66 9.68 -39.63 -0.38 -2.05 16 5 C -0.12 -1.45 10.04 -39.51 -0.40 -1.85 16 6 C -0.13 -1.63 9.69 -39.63 -0.38 -2.01 16 7 C -0.07 -1.04 5.89 -104.28 -0.61 -1.66 16 8 C -0.11 -1.49 8.80 36.01 0.32 -1.18 16 9 C -0.01 -0.10 5.51 -104.90 -0.58 -0.67 16 10 C 0.05 0.87 3.94 -82.92 -0.33 0.55 16 11 C -0.10 -1.78 8.43 -39.14 -0.33 -2.11 16 12 C -0.20 -4.17 9.22 -39.14 -0.36 -4.53 16 13 C 0.11 2.48 6.67 -38.87 -0.26 2.22 16 14 O -0.16 -4.37 9.76 0.18 0.00 -4.36 16 15 C -0.39 -10.45 9.47 30.89 0.29 -10.16 16 16 H 0.09 2.26 5.31 -52.49 -0.28 1.98 16 17 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 18 N -0.85 -23.88 13.67 55.48 0.76 -23.12 16 19 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 C 0.03 0.59 11.14 -17.35 -0.19 0.40 16 24 N -0.42 -8.26 7.38 -9.61 -0.07 -8.33 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 1.49 5.83 -51.93 -0.30 1.19 16 27 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 28 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 29 H 0.07 1.17 7.09 -51.93 -0.37 0.80 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.07 0.83 8.11 -51.92 -0.42 0.41 16 34 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 35 H 0.07 1.09 6.83 -51.93 -0.35 0.73 16 36 H 0.12 1.84 7.96 -52.49 -0.42 1.42 16 37 H 0.14 2.75 5.81 -52.49 -0.30 2.44 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.15 2.97 8.06 -52.49 -0.42 2.55 16 LS Contribution 325.88 15.07 4.91 4.91 Total: -1.00 -28.65 325.88 -8.02 -36.67 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.96 Total: 6.21 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -3.64 Total: -26.47 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.69 Total: -31.45 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: 0.00 Total: -4.36 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.65 -8.02 -36.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242815970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.956 kcal (2) G-P(sol) polarization free energy of solvation -28.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds