Wall clock time and date at job start Tue Mar 31 2020 05:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35597 * 116.99841 * 2 1 4 4 C 1.39132 * 119.52521 * 179.73065 * 3 2 1 5 5 C 1.38020 * 119.26523 * 179.71202 * 4 3 2 6 6 C 1.40212 * 118.36044 * 0.55480 * 5 4 3 7 7 C 1.47908 * 120.49910 * 179.75319 * 6 5 4 8 8 C 1.39995 * 119.88432 * 291.17462 * 7 6 5 9 9 C 1.36208 * 120.11610 * 179.97438 * 8 7 6 10 10 C 1.40959 * 119.88275 * 0.02562 * 9 8 7 11 11 C 1.41004 * 120.11599 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00189 * 24.27081 * 11 10 9 13 13 C 1.39984 * 120.00080 * 204.26547 * 11 10 9 14 14 N 1.30816 * 120.00099 * 18.91994 * 13 11 10 15 15 Si 1.86797 * 119.99974 * 198.91948 * 13 11 10 16 16 H 1.48501 * 109.47479 * 90.00065 * 15 13 11 17 17 H 1.48508 * 109.46923 * 210.00121 * 15 13 11 18 18 H 1.48495 * 109.47260 * 330.00017 * 15 13 11 19 19 C 1.40934 * 119.77420 * 359.97438 * 10 9 8 20 20 C 1.36244 * 119.87606 * 359.70123 * 19 10 9 21 21 C 1.50697 * 119.94388 * 180.31497 * 20 19 10 22 22 C 1.39512 * 119.00184 * 359.72357 * 6 5 4 23 23 C 1.50696 * 119.68640 * 180.02562 * 22 6 5 24 24 N 1.31733 * 120.62687 * 359.97438 * 22 6 5 25 25 H 1.09000 * 109.47312 * 59.99660 * 1 2 3 26 26 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47110 * 299.99698 * 1 2 3 28 28 H 1.08003 * 120.36238 * 359.97438 * 4 3 2 29 29 H 1.08001 * 120.82206 * 180.25626 * 5 4 3 30 30 H 1.07998 * 119.94256 * 359.97438 * 8 7 6 31 31 H 1.08001 * 120.06223 * 180.02562 * 9 8 7 32 32 H 0.96998 * 120.00407 * 179.97438 * 14 13 11 33 33 H 1.07993 * 120.06388 * 180.02562 * 19 10 9 34 34 H 1.09000 * 109.47114 * 270.92979 * 21 20 19 35 35 H 1.09005 * 109.46791 * 30.92701 * 21 20 19 36 36 H 1.08997 * 109.47537 * 150.92233 * 21 20 19 37 37 H 1.09002 * 109.47391 * 266.58099 * 23 22 6 38 38 H 1.08996 * 109.47451 * 26.58120 * 23 22 6 39 39 H 1.09001 * 109.46913 * 146.58096 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 3.4346 1.2695 0.0057 5 6 4.0556 2.5021 -0.0004 6 6 3.2534 3.6521 -0.0002 7 6 3.8691 4.9969 -0.0011 8 6 4.5589 5.4490 1.1301 9 6 5.1282 6.6864 1.1343 10 6 5.0214 7.5124 -0.0030 11 6 5.6084 8.7944 -0.0038 12 1 6.4396 9.0082 0.6517 13 6 5.1138 9.7901 -0.8544 14 7 3.9148 9.6777 -1.3652 15 14 6.1660 11.2793 -1.2601 16 1 6.9783 10.9966 -2.4707 17 1 5.2890 12.4504 -1.5147 18 1 7.0670 11.5748 -0.1174 19 6 4.3259 7.0525 -1.1391 20 6 3.7657 5.8105 -1.1354 21 6 3.0278 5.3144 -2.3520 22 6 1.8656 3.5087 0.0002 23 6 0.9887 4.7343 -0.0002 24 7 1.3145 2.3122 -0.0001 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0210 0.3626 0.0105 29 1 5.1328 2.5790 -0.0003 30 1 4.6398 4.8155 2.0010 31 1 5.6606 7.0341 2.0073 32 1 3.5718 10.3678 -1.9544 33 1 4.2415 7.6812 -2.0131 34 1 1.9792 5.6044 -2.2843 35 1 3.4686 5.7520 -3.2478 36 1 3.1018 4.2282 -2.4041 37 1 0.7277 4.9947 1.0256 38 1 1.5246 5.5644 -0.4605 39 1 0.0796 4.5304 -0.5659 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242928496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:23 Heat of formation + Delta-G solvation = 2.260865 kcal Electronic energy + Delta-G solvation = -21527.808475 eV Core-core repulsion = 18399.829562 eV Total energy + Delta-G solvation = -3127.978914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.34947 -38.38538 -37.18498 -34.11969 -32.73456 -32.06518 -31.12028 -29.12136 -28.01728 -26.65690 -25.89880 -24.74765 -22.50555 -21.79519 -20.59894 -19.59340 -17.90480 -17.16553 -16.43183 -15.82969 -15.69624 -15.23255 -14.28655 -14.12465 -13.83631 -13.67523 -13.38903 -13.15637 -13.00068 -12.60650 -12.27004 -12.09348 -11.87542 -11.81756 -11.61635 -11.43571 -11.25808 -11.17033 -10.93354 -10.75115 -10.67865 -10.36588 -9.74722 -9.59984 -9.41709 -9.26144 -9.13474 -7.90533 -7.44018 -7.26524 -6.87465 -4.42994 1.50695 1.66696 2.65034 3.00711 3.03371 3.04763 3.11895 3.31021 3.84813 4.11472 4.48199 4.55528 5.23668 5.30065 5.36147 5.37044 5.44100 5.58727 5.62162 5.77972 5.94417 6.01293 6.04523 6.07200 6.13831 6.29670 6.36108 6.40482 6.55738 6.65941 6.77170 6.82814 6.87998 6.97791 7.22302 7.28459 7.50324 7.55703 7.82686 7.96879 8.05089 8.20693 8.26257 8.53363 8.78679 8.89088 10.05104 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.038225 B = 0.003861 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.337950 B = 7249.539969 C = 7542.776317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.315 6.315 3 C 0.295 3.705 4 C -0.196 4.196 5 C -0.046 4.046 6 C -0.067 4.067 7 C -0.194 4.194 8 C -0.064 4.064 9 C -0.231 4.231 10 C 0.119 3.881 11 C -0.456 4.456 12 H 0.079 0.921 13 C 0.077 3.923 14 N -0.782 5.782 15 Si 0.908 3.092 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.261 1.261 19 C -0.166 4.166 20 C -0.049 4.049 21 C -0.106 4.106 22 C 0.166 3.834 23 C -0.107 4.107 24 N -0.541 5.541 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.282 0.718 33 H 0.118 0.882 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.782 -9.641 -0.211 10.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.223 6.223 3 C 0.117 3.883 4 C -0.217 4.217 5 C -0.072 4.072 6 C -0.069 4.069 7 C -0.195 4.195 8 C -0.083 4.083 9 C -0.251 4.251 10 C 0.116 3.884 11 C -0.484 4.484 12 H 0.098 0.902 13 C -0.143 4.143 14 N -0.406 5.406 15 Si 0.732 3.268 16 H -0.192 1.192 17 H -0.202 1.202 18 H -0.185 1.185 19 C -0.185 4.185 20 C -0.049 4.049 21 C -0.163 4.163 22 C 0.029 3.971 23 C -0.164 4.164 24 N -0.265 5.265 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.136 0.864 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.772 -9.852 -0.359 10.952 hybrid contribution 1.028 0.803 -0.117 1.310 sum -3.744 -9.048 -0.475 9.804 Atomic orbital electron populations 1.22734 0.78024 1.02148 1.02276 1.86165 1.22303 1.25191 1.88677 1.19733 0.89258 0.84347 0.94987 1.20881 0.91698 0.99193 1.09881 1.21642 1.00441 0.90538 0.94544 1.19600 0.92463 0.94463 1.00404 1.17590 1.11946 0.93149 0.96863 1.20224 0.97000 0.95553 0.95478 1.20622 1.09560 0.96553 0.98339 1.17649 0.88796 0.92105 0.89847 1.19617 1.14738 0.95153 1.18934 0.90248 1.25957 0.94363 1.00038 0.93912 1.69822 1.14003 1.33482 1.23342 0.86312 0.80583 0.79893 0.80003 1.19165 1.20236 1.18530 1.20837 1.04165 0.94215 0.99312 1.19158 0.98181 0.94235 0.93326 1.20773 0.99454 0.99673 0.96376 1.21178 0.91794 0.91000 0.93097 1.20876 0.98390 0.94278 1.02890 1.66972 1.40945 0.98495 1.20086 0.92625 0.89257 0.92633 0.84966 0.84480 0.89538 0.88971 0.90655 0.86385 0.92295 0.92845 0.93427 0.90894 0.88511 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.37 101.05 1.05 1.55 16 2 O -0.32 -4.68 10.47 -18.49 -0.19 -4.87 16 3 C 0.30 4.89 7.49 -16.99 -0.13 4.76 16 4 C -0.20 -3.04 10.02 -39.33 -0.39 -3.43 16 5 C -0.05 -0.77 9.92 -38.92 -0.39 -1.16 16 6 C -0.07 -1.25 3.97 -104.72 -0.42 -1.67 16 7 C -0.19 -4.05 4.50 -104.63 -0.47 -4.52 16 8 C -0.06 -1.38 9.70 -39.65 -0.38 -1.77 16 9 C -0.23 -5.42 9.73 -39.28 -0.38 -5.81 16 10 C 0.12 3.00 5.58 -106.80 -0.60 2.41 16 11 C -0.46 -11.53 9.03 -37.88 -0.34 -11.87 16 12 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 13 C 0.08 1.83 5.11 -17.33 -0.09 1.74 16 14 N -0.78 -19.17 10.99 55.55 0.61 -18.56 16 15 Si 0.91 17.85 29.60 -169.99 -5.03 12.82 16 16 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 17 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 19 C -0.17 -4.06 8.27 -39.28 -0.32 -4.38 16 20 C -0.05 -1.06 4.72 -104.69 -0.49 -1.55 16 21 C -0.11 -1.99 8.63 36.00 0.31 -1.68 16 22 C 0.17 2.99 6.34 -82.16 -0.52 2.47 16 23 C -0.11 -1.81 9.31 36.00 0.34 -1.47 16 24 N -0.54 -9.46 9.10 -9.19 -0.08 -9.54 16 25 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 29 H 0.14 2.07 8.06 -52.49 -0.42 1.64 16 30 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 33 H 0.12 3.00 6.17 -52.49 -0.32 2.67 16 34 H 0.06 1.05 6.66 -51.93 -0.35 0.70 16 35 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 36 H 0.05 0.86 6.96 -51.93 -0.36 0.50 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.10 1.79 4.20 -51.93 -0.22 1.57 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -26.63 325.29 -8.05 -34.68 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.02 Total: 6.94 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -3.23 Total: -26.37 kcal Atomic # 7 Polarization: -28.63 SS G_CDS: 0.53 Total: -28.10 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.19 Total: -4.87 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.63 -8.05 -34.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242928496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.940 kcal (2) G-P(sol) polarization free energy of solvation -26.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds