Wall clock time and date at job start Tue Mar 31 2020 05:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99492 * 2 1 4 4 C 1.50706 * 109.46924 * 179.97438 * 3 2 1 5 5 C 1.38383 * 120.34516 * 270.02504 * 4 3 2 6 6 N 1.31922 * 121.08080 * 179.97438 * 5 4 3 7 7 C 1.31698 * 121.87815 * 359.74115 * 6 5 4 8 8 C 1.39570 * 120.55633 * 0.54691 * 7 6 5 9 9 C 1.48001 * 120.55896 * 179.72368 * 8 7 6 10 10 C 1.39956 * 119.87912 * 179.74610 * 9 8 7 11 11 C 1.36238 * 120.11644 * 179.69110 * 10 9 8 12 12 C 1.40945 * 119.87584 * 0.55758 * 11 10 9 13 13 C 1.41037 * 120.11540 * 179.71501 * 12 11 10 14 14 H 1.08003 * 119.99988 * 154.22142 * 13 12 11 15 15 C 1.40013 * 119.99804 * 334.21682 * 13 12 11 16 16 N 1.30789 * 120.00264 * 334.60776 * 15 13 12 17 17 Si 1.86806 * 119.99706 * 154.60552 * 15 13 12 18 18 H 1.48488 * 109.47170 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47131 * 300.00097 * 17 15 13 20 20 H 1.48504 * 109.47197 * 59.99855 * 17 15 13 21 21 C 1.40909 * 119.76844 * 359.44299 * 12 11 10 22 22 C 1.50703 * 120.06351 * 180.29728 * 21 12 11 23 23 C 1.36274 * 119.87372 * 0.27206 * 21 12 11 24 24 C 1.38329 * 120.34670 * 89.99703 * 4 3 2 25 25 H 1.09001 * 109.47303 * 300.00002 * 1 2 3 26 26 H 1.09005 * 109.46801 * 60.00092 * 1 2 3 27 27 H 1.08994 * 109.46907 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47194 * 60.00211 * 3 2 1 29 29 H 1.08993 * 109.47564 * 299.99678 * 3 2 1 30 30 H 1.07999 * 119.45722 * 359.97434 * 5 4 3 31 31 H 1.07997 * 119.72327 * 180.26803 * 7 6 5 32 32 H 1.07996 * 119.93966 * 359.96996 * 10 9 8 33 33 H 1.08003 * 120.06093 * 180.27396 * 11 10 9 34 34 H 0.96998 * 120.00155 * 354.16513 * 16 15 13 35 35 H 1.08994 * 109.46811 * 90.00165 * 22 21 12 36 36 H 1.09004 * 109.46577 * 209.99886 * 22 21 12 37 37 H 1.08994 * 109.46796 * 329.99702 * 22 21 12 38 38 H 1.08005 * 119.93962 * 180.02562 * 23 21 12 39 39 H 1.08001 * 120.85193 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2089 1.1311 1.1952 6 7 5.5239 1.0265 1.2127 7 6 6.2315 0.9653 0.1037 8 6 5.6046 1.0211 -1.1421 9 6 6.4004 0.9584 -2.3884 10 6 5.7565 1.0102 -3.6300 11 6 6.4848 0.9592 -4.7803 12 6 7.8880 0.8421 -4.7183 13 6 8.6463 0.7828 -5.9060 14 1 9.6771 1.1051 -5.9052 15 6 8.0628 0.3059 -7.0860 16 7 7.0498 -0.5193 -7.0276 17 14 8.7312 0.8484 -8.7439 18 1 7.9451 0.2074 -9.8283 19 1 8.6240 2.3248 -8.8618 20 1 10.1557 0.4448 -8.8594 21 6 8.5310 0.7903 -3.4655 22 6 10.0316 0.6720 -3.3915 23 6 7.7935 0.8480 -2.3211 24 6 4.2097 1.1312 -1.1928 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.6670 1.1742 2.1284 31 1 7.3064 0.8755 0.1586 32 1 4.6809 1.0953 -3.6763 33 1 5.9874 1.0037 -5.7379 34 1 6.7564 -0.8673 -6.1710 35 1 10.4740 1.6679 -3.3727 36 1 10.3092 0.1339 -2.4851 37 1 10.3965 0.1285 -4.2629 38 1 8.2853 0.8089 -1.3603 39 1 3.6914 1.1724 -2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242954852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:49 Heat of formation + Delta-G solvation = -13.056865 kcal Electronic energy + Delta-G solvation = -20883.801209 eV Core-core repulsion = 17755.158068 eV Total energy + Delta-G solvation = -3128.643140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.90299 -38.18355 -37.63928 -34.45940 -32.84316 -32.40988 -30.98983 -28.83589 -27.45019 -26.40686 -25.54861 -24.90164 -23.07201 -22.12783 -20.31715 -19.62366 -18.00482 -16.84477 -16.45984 -16.33221 -15.66117 -15.24750 -14.87108 -14.42054 -14.20290 -13.88418 -13.45864 -12.94092 -12.84927 -12.75787 -12.63417 -12.39576 -12.15020 -11.80392 -11.63456 -11.45460 -11.32793 -11.26619 -11.02644 -10.67173 -10.53817 -9.89623 -9.80484 -9.60913 -9.47674 -9.18390 -8.97798 -8.78632 -7.80400 -7.47752 -7.22990 -4.60463 1.27080 1.59460 2.71009 2.77414 3.03762 3.15171 3.23869 3.75786 3.83780 4.23727 4.56095 4.78380 4.93588 4.96007 5.19171 5.20755 5.25176 5.31262 5.39067 5.44465 5.50786 5.63885 5.80280 5.92534 6.12087 6.18465 6.23852 6.43448 6.50128 6.52462 6.58953 6.80613 6.90796 6.94874 7.01953 7.13294 7.21418 7.51023 7.56739 7.67647 7.77689 7.95357 8.09807 8.39282 8.51978 8.63830 9.77764 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021344 B = 0.003877 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.527110 B = 7220.294361 C = 8349.052469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.111 3.889 4 C -0.134 4.134 5 C 0.068 3.932 6 N -0.478 5.478 7 C 0.071 3.929 8 C -0.021 4.021 9 C -0.215 4.215 10 C -0.056 4.056 11 C -0.223 4.223 12 C 0.105 3.895 13 C -0.490 4.490 14 H 0.084 0.916 15 C 0.035 3.965 16 N -0.776 5.776 17 Si 1.065 2.935 18 H -0.272 1.272 19 H -0.272 1.272 20 H -0.273 1.273 21 C -0.201 4.201 22 C -0.086 4.086 23 C -0.049 4.049 24 C -0.088 4.088 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.303 0.697 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.698 2.734 6.728 9.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.034 3.966 4 C -0.136 4.136 5 C -0.089 4.089 6 N -0.185 5.185 7 C -0.087 4.087 8 C -0.023 4.023 9 C -0.216 4.216 10 C -0.074 4.074 11 C -0.242 4.242 12 C 0.101 3.899 13 C -0.517 4.517 14 H 0.102 0.898 15 C -0.189 4.189 16 N -0.398 5.398 17 Si 0.888 3.112 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.198 1.198 21 C -0.202 4.202 22 C -0.143 4.143 23 C -0.067 4.067 24 C -0.114 4.114 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.446 2.355 5.900 9.050 hybrid contribution -0.583 0.366 0.869 1.109 sum -7.029 2.722 6.769 10.131 Atomic orbital electron populations 1.22749 0.81239 1.02763 0.99868 1.88011 1.19380 1.27571 1.95364 1.21232 0.89736 0.84939 1.00719 1.20364 0.94621 1.03835 0.94733 1.22299 0.90118 0.99874 0.96586 1.67502 1.07803 1.11486 1.31734 1.22822 0.99952 0.98838 0.87064 1.19922 0.92941 0.94802 0.94675 1.17813 0.92387 1.21217 0.90217 1.20418 0.97362 0.97396 0.92238 1.20830 0.94413 1.12066 0.96939 1.17651 0.91834 0.88156 0.92211 1.20786 1.00589 1.36100 0.94192 0.89750 1.27210 0.93529 0.92850 1.05333 1.70438 1.18856 1.17165 1.33313 0.83624 0.76744 0.77532 0.73333 1.19614 1.19735 1.19821 1.19390 0.94854 1.13173 0.92806 1.20417 0.93238 0.99939 1.00679 1.20280 0.92506 0.97462 0.96479 1.21465 0.93625 0.98741 0.97568 0.94137 0.94060 0.89638 0.92412 0.92456 0.83902 0.83107 0.88927 0.87496 0.88260 0.93763 0.94033 0.92028 0.88631 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.28 10.69 -35.23 -0.38 -5.65 16 3 C 0.11 1.39 6.08 36.01 0.22 1.61 16 4 C -0.13 -2.11 5.52 -104.53 -0.58 -2.69 16 5 C 0.07 1.09 10.85 -17.46 -0.19 0.90 16 6 N -0.48 -8.60 10.35 -12.89 -0.13 -8.74 16 7 C 0.07 1.31 10.60 -17.11 -0.18 1.13 16 8 C -0.02 -0.42 5.90 -104.73 -0.62 -1.03 16 9 C -0.21 -4.62 5.90 -104.63 -0.62 -5.24 16 10 C -0.06 -1.24 9.37 -39.66 -0.37 -1.61 16 11 C -0.22 -5.39 7.89 -39.28 -0.31 -5.70 16 12 C 0.10 2.58 5.29 -106.80 -0.57 2.02 16 13 C -0.49 -11.92 8.05 -37.86 -0.30 -12.23 16 14 H 0.08 1.97 6.91 -52.48 -0.36 1.61 16 15 C 0.04 0.82 4.93 -17.33 -0.09 0.74 16 16 N -0.78 -19.27 12.31 55.55 0.68 -18.58 16 17 Si 1.07 19.89 30.00 -169.99 -5.10 14.79 16 18 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 21 C -0.20 -4.57 5.90 -104.32 -0.62 -5.19 16 22 C -0.09 -1.68 9.39 36.01 0.34 -1.34 16 23 C -0.05 -1.05 9.01 -39.66 -0.36 -1.41 16 24 C -0.09 -1.57 9.21 -38.88 -0.36 -1.93 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.60 8.09 -51.93 -0.42 0.17 16 29 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 30 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.15 2.57 6.20 -52.49 -0.33 2.25 16 32 H 0.09 1.85 6.24 -52.49 -0.33 1.52 16 33 H 0.11 2.64 6.50 -52.48 -0.34 2.30 16 34 H 0.30 7.78 6.70 -40.82 -0.27 7.51 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.06 1.23 6.76 -51.93 -0.35 0.88 16 38 H 0.10 1.81 6.20 -52.48 -0.33 1.48 16 39 H 0.13 2.16 6.30 -52.49 -0.33 1.83 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -27.15 326.28 -8.30 -35.45 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -4.81 Total: 8.38 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: -3.48 Total: -30.56 kcal Atomic # 7 Polarization: -27.87 SS G_CDS: 0.55 Total: -27.32 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.38 Total: -5.65 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.10 Total: 14.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.15 -8.30 -35.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242954852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.390 kcal (2) G-P(sol) polarization free energy of solvation -27.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds