Wall clock time and date at job start Tue Mar 31 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00181 * 2 1 4 4 C 1.50700 * 109.46881 * 180.02562 * 3 2 1 5 5 C 1.38377 * 120.34554 * 90.00440 * 4 3 2 6 6 N 1.31928 * 121.08047 * 180.02562 * 5 4 3 7 7 C 1.31688 * 121.87671 * 359.97438 * 6 5 4 8 8 C 1.39570 * 120.56289 * 359.97292 * 7 6 5 9 9 C 1.47998 * 120.56456 * 179.74775 * 8 7 6 10 10 C 1.39949 * 119.87985 * 129.72337 * 9 8 7 11 11 C 1.36240 * 120.12250 * 179.76341 * 10 9 8 12 12 C 1.40950 * 119.87245 * 0.53664 * 11 10 9 13 13 C 1.41032 * 120.11710 * 179.73434 * 12 11 10 14 14 H 1.08001 * 119.99861 * 204.65858 * 13 12 11 15 15 C 1.40015 * 119.99954 * 24.66875 * 13 12 11 16 16 N 1.30801 * 119.99805 * 17.94750 * 15 13 12 17 17 Si 1.86797 * 120.00068 * 197.95110 * 15 13 12 18 18 H 1.48504 * 109.47102 * 59.99866 * 17 15 13 19 19 H 1.48495 * 109.47166 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47177 * 299.99733 * 17 15 13 21 21 C 1.40909 * 119.76611 * 359.72248 * 12 11 10 22 22 C 1.36280 * 119.87799 * 359.97438 * 21 12 11 23 23 C 1.50698 * 119.93939 * 180.02562 * 22 21 12 24 24 C 1.38336 * 120.34349 * 269.97516 * 4 3 2 25 25 H 1.08997 * 109.47765 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46709 * 299.99816 * 1 2 3 27 27 H 1.08999 * 109.47612 * 59.99633 * 1 2 3 28 28 H 1.08992 * 109.46862 * 60.00054 * 3 2 1 29 29 H 1.09000 * 109.46842 * 300.00168 * 3 2 1 30 30 H 1.08002 * 119.46115 * 0.02562 * 5 4 3 31 31 H 1.07999 * 119.72125 * 180.02562 * 7 6 5 32 32 H 1.08007 * 119.94392 * 0.03116 * 10 9 8 33 33 H 1.07994 * 120.06929 * 180.25819 * 11 10 9 34 34 H 0.96995 * 119.99735 * 180.02562 * 16 15 13 35 35 H 1.07995 * 120.06477 * 180.02562 * 21 12 11 36 36 H 1.08995 * 109.47090 * 270.01930 * 23 22 21 37 37 H 1.08999 * 109.47247 * 30.02001 * 23 22 21 38 38 H 1.09002 * 109.46709 * 150.02006 * 23 22 21 39 39 H 1.07999 * 120.85060 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.2090 1.1314 -1.1951 6 7 5.5240 1.0266 -1.2126 7 6 6.2319 0.9702 -0.1036 8 6 5.6047 1.0208 1.1421 9 6 6.3998 0.9518 2.3885 10 6 6.2017 1.9033 3.3954 11 6 6.9275 1.8416 4.5467 12 6 7.8874 0.8238 4.7178 13 6 8.6455 0.7584 5.9052 14 1 9.6117 0.2758 5.9031 15 6 8.1456 1.3190 7.0868 16 7 6.8693 1.5836 7.1962 17 14 9.3012 1.6892 8.5070 18 1 10.3383 2.6547 8.0625 19 1 8.5302 2.2749 9.6328 20 1 9.9540 0.4327 8.9543 21 6 8.0866 -0.1285 3.6985 22 6 7.3507 -0.0612 2.5534 23 6 7.5622 -1.0792 1.4625 24 6 4.2098 1.1314 1.1929 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6887 1.8463 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.6672 1.1750 -2.1284 31 1 7.3072 0.8850 -0.1585 32 1 5.4690 2.6854 3.2615 33 1 6.7710 2.5739 5.3249 34 1 6.5230 1.9723 8.0146 35 1 8.8204 -0.9106 3.8247 36 1 8.3289 -0.7214 0.7754 37 1 7.8816 -2.0234 1.9036 38 1 6.6290 -1.2290 0.9196 39 1 3.6914 1.1724 2.1395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242955899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:25 Heat of formation + Delta-G solvation = -6.875800 kcal Electronic energy + Delta-G solvation = -20979.430583 eV Core-core repulsion = 17851.055473 eV Total energy + Delta-G solvation = -3128.375109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.94943 -38.00935 -37.49992 -34.32081 -32.72939 -32.00642 -31.27489 -29.12488 -27.41124 -25.96802 -25.55021 -25.27114 -22.98398 -21.65598 -20.43201 -19.78371 -17.05693 -16.68543 -16.43637 -16.36813 -15.81613 -15.39031 -15.12924 -14.55828 -14.04017 -13.79632 -13.14209 -12.92812 -12.78826 -12.69301 -12.49499 -12.45299 -12.07387 -11.95931 -11.64196 -11.55974 -11.36180 -11.11892 -11.02376 -10.64020 -10.44483 -9.87433 -9.81998 -9.59188 -9.43717 -9.20499 -9.04051 -8.52054 -7.53513 -7.22106 -6.92829 -4.47351 1.35483 1.64690 2.68348 2.98063 2.99865 3.00554 3.11769 3.73851 3.80939 4.30840 4.51899 4.78667 4.93683 4.96606 5.20036 5.22534 5.25798 5.43969 5.44564 5.51633 5.54272 5.66032 5.92232 5.95002 6.04073 6.20453 6.29263 6.31006 6.51999 6.56695 6.69002 6.85688 6.92782 7.02540 7.10588 7.15545 7.25007 7.51359 7.78419 7.92937 8.00331 8.14455 8.36344 8.48915 8.72695 8.83740 9.99886 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.003810 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.694054 B = 7346.453284 C = 8099.418881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.111 3.889 4 C -0.144 4.144 5 C 0.084 3.916 6 N -0.486 5.486 7 C 0.092 3.908 8 C -0.029 4.029 9 C -0.205 4.205 10 C -0.073 4.073 11 C -0.172 4.172 12 C 0.121 3.879 13 C -0.451 4.451 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.781 5.781 17 Si 0.911 3.089 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.226 4.226 22 C -0.033 4.033 23 C -0.110 4.110 24 C -0.068 4.068 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.284 0.716 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.729 0.571 -8.309 11.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.034 3.966 4 C -0.146 4.146 5 C -0.073 4.073 6 N -0.194 5.194 7 C -0.065 4.065 8 C -0.030 4.030 9 C -0.207 4.207 10 C -0.091 4.091 11 C -0.192 4.192 12 C 0.118 3.882 13 C -0.479 4.479 14 H 0.099 0.901 15 C -0.145 4.145 16 N -0.405 5.405 17 Si 0.735 3.265 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.188 1.188 21 C -0.246 4.246 22 C -0.033 4.033 23 C -0.167 4.167 24 C -0.093 4.093 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.162 0.838 31 H 0.170 0.830 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.369 0.452 -8.937 11.593 hybrid contribution -0.336 0.435 1.654 1.743 sum -7.705 0.887 -7.283 10.639 Atomic orbital electron populations 1.22745 0.81240 1.02748 0.99874 1.88006 1.19382 1.27596 1.95366 1.21229 0.89679 0.84945 1.00758 1.20415 0.94739 1.04663 0.94767 1.22385 0.90192 0.98098 0.96647 1.67569 1.07728 1.12272 1.31801 1.23052 1.00011 0.96438 0.87036 1.19945 0.92779 0.95489 0.94837 1.17726 1.05153 1.03174 0.94675 1.20398 0.98406 0.96865 0.93456 1.20966 1.00955 1.00499 0.96745 1.17678 0.90132 0.88715 0.91627 1.19648 1.04025 1.31284 0.92983 0.90100 1.26004 0.95178 0.92852 1.00426 1.69808 1.13179 1.29742 1.27752 0.86314 0.80866 0.79940 0.79400 1.18624 1.20183 1.18814 1.20526 1.05527 1.02050 0.96459 1.19065 0.94893 0.94595 0.94787 1.20827 1.00827 0.97670 0.97344 1.21664 0.93665 0.96452 0.97560 0.89657 0.94031 0.94167 0.92382 0.92436 0.83800 0.82964 0.89404 0.86385 0.90477 0.88685 0.92321 0.92663 0.92776 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.19 10.69 -35.23 -0.38 -5.57 16 3 C 0.11 1.37 6.08 36.01 0.22 1.59 16 4 C -0.14 -2.21 5.52 -104.53 -0.58 -2.79 16 5 C 0.08 1.29 10.85 -17.46 -0.19 1.10 16 6 N -0.49 -8.42 10.35 -12.89 -0.13 -8.56 16 7 C 0.09 1.65 9.07 -17.12 -0.16 1.49 16 8 C -0.03 -0.54 4.71 -104.73 -0.49 -1.04 16 9 C -0.21 -4.44 5.52 -104.63 -0.58 -5.02 16 10 C -0.07 -1.65 9.47 -39.66 -0.38 -2.03 16 11 C -0.17 -4.31 8.63 -39.27 -0.34 -4.65 16 12 C 0.12 3.11 5.57 -106.80 -0.60 2.51 16 13 C -0.45 -11.44 9.03 -37.86 -0.34 -11.78 16 14 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 15 C 0.08 1.80 5.13 -17.33 -0.09 1.71 16 16 N -0.78 -19.28 10.96 55.55 0.61 -18.67 16 17 Si 0.91 17.79 29.60 -169.99 -5.03 12.75 16 18 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 19 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 C -0.23 -5.35 9.36 -39.28 -0.37 -5.72 16 22 C -0.03 -0.72 5.84 -104.70 -0.61 -1.33 16 23 C -0.11 -1.98 8.44 36.00 0.30 -1.67 16 24 C -0.07 -1.18 9.37 -38.88 -0.36 -1.55 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.15 2.59 6.87 -52.49 -0.36 2.23 16 32 H 0.09 1.82 8.05 -52.48 -0.42 1.40 16 33 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 34 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 35 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 36 H 0.06 0.95 7.50 -51.93 -0.39 0.56 16 37 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.05 0.97 6.44 -51.93 -0.33 0.63 16 39 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -27.56 330.61 -8.57 -36.13 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.18 Total: 6.71 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -3.44 Total: -27.78 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.48 Total: -27.23 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.38 Total: -5.57 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.56 -8.57 -36.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242955899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.254 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds