Wall clock time and date at job start Tue Mar 31 2020 05:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31266 * 119.80057 * 2 1 4 4 C 1.33018 * 121.72418 * 180.30546 * 3 2 1 5 5 C 1.47970 * 119.44679 * 179.70938 * 4 3 2 6 6 C 1.39630 * 120.14166 * 227.80563 * 5 4 3 7 7 C 1.37916 * 119.84656 * 180.02562 * 6 5 4 8 8 C 1.38408 * 120.14955 * 0.02562 * 7 6 5 9 9 C 1.38370 * 120.29102 * 359.96938 * 8 7 6 10 10 C 1.50704 * 119.92395 * 180.02562 * 9 8 7 11 11 O 1.42895 * 109.47295 * 0.02562 * 10 9 8 12 12 C 1.37953 * 120.14769 * 0.28191 * 9 8 7 13 13 C 1.50692 * 120.07474 * 179.71962 * 12 9 8 14 14 C 1.39897 * 121.10200 * 359.44451 * 4 3 2 15 15 C 1.36605 * 119.46425 * 0.26715 * 14 4 3 16 16 C 1.40948 * 119.79873 * 179.75183 * 2 1 3 17 17 C 1.41053 * 120.55462 * 359.95845 * 16 2 1 18 18 H 1.08003 * 120.00056 * 331.04164 * 17 16 2 19 19 C 1.40031 * 120.00053 * 151.04935 * 17 16 2 20 20 N 1.30788 * 120.00253 * 344.60907 * 19 17 16 21 21 Si 1.86799 * 119.99649 * 164.61023 * 19 17 16 22 22 H 1.48496 * 109.47559 * 60.00215 * 21 19 17 23 23 H 1.48504 * 109.46918 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47404 * 299.99680 * 21 19 17 25 25 H 1.08995 * 109.46721 * 270.24807 * 1 2 3 26 26 H 1.09000 * 109.46647 * 30.25159 * 1 2 3 27 27 H 1.09006 * 109.46697 * 150.24775 * 1 2 3 28 28 H 1.07995 * 120.07639 * 0.02562 * 6 5 4 29 29 H 1.08000 * 119.92607 * 179.97438 * 7 6 5 30 30 H 1.08000 * 119.85389 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.46886 * 240.00187 * 10 9 8 32 32 H 1.08999 * 109.46876 * 120.00266 * 10 9 8 33 33 H 0.96696 * 113.99884 * 179.97438 * 11 10 9 34 34 H 1.09004 * 109.47342 * 92.70541 * 13 12 9 35 35 H 1.09007 * 109.47330 * 212.69932 * 13 12 9 36 36 H 1.08996 * 109.47289 * 332.70371 * 13 12 9 37 37 H 1.07996 * 120.26740 * 180.29527 * 14 4 3 38 38 H 1.07997 * 120.79439 * 179.97438 * 15 14 4 39 39 H 0.96990 * 120.00183 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1391 0.0000 4 6 3.4888 1.1837 -0.0060 5 6 4.1726 2.4960 -0.0123 6 6 5.2118 2.7408 -0.9121 7 6 5.8452 3.9659 -0.9123 8 6 5.4533 4.9513 -0.0228 9 6 4.4241 4.7151 0.8714 10 6 4.0037 5.7941 1.8358 11 8 4.8102 6.9559 1.6320 12 6 3.7856 3.4923 0.8856 13 6 2.6691 3.2347 1.8644 14 6 4.2513 0.0108 -0.0011 15 6 3.6204 -1.2008 0.0046 16 6 2.2075 -1.2231 0.0053 17 6 1.5098 -2.4490 0.0115 18 1 0.5317 -2.5114 0.4653 19 6 2.0853 -3.5851 -0.5706 20 7 3.1103 -3.4607 -1.3733 21 14 1.3890 -5.2785 -0.2005 22 1 -0.0310 -5.3349 -0.6314 23 1 2.1698 -6.3061 -0.9350 24 1 1.4742 -5.5407 1.2586 25 1 -0.3632 0.0044 1.0276 26 1 -0.3632 0.8877 -0.5177 27 1 -0.3633 -0.8923 -0.5100 28 1 5.5189 1.9727 -1.6063 29 1 6.6495 4.1565 -1.6074 30 1 5.9529 5.9088 -0.0268 31 1 4.1312 5.4376 2.8580 32 1 2.9565 6.0449 1.6665 33 1 4.5942 7.6927 2.2198 34 1 1.7139 3.4753 1.3976 35 1 2.6766 2.1844 2.1559 36 1 2.8092 3.8579 2.7475 37 1 5.3300 0.0628 -0.0013 38 1 4.1878 -2.1196 0.0081 39 1 3.5087 -4.2476 -1.7767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243013145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:08 Heat of formation + Delta-G solvation = -17.483208 kcal Electronic energy + Delta-G solvation = -21348.653202 eV Core-core repulsion = 18219.818121 eV Total energy + Delta-G solvation = -3128.835081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.47320 -38.23406 -36.52039 -34.25027 -32.59240 -32.33369 -30.97481 -29.85062 -27.11033 -26.80250 -25.58480 -24.87351 -22.26356 -20.79961 -20.29401 -19.68707 -17.42424 -17.36087 -16.17813 -15.50892 -15.00729 -14.82723 -14.72056 -14.35905 -14.03695 -13.62633 -13.14664 -12.93308 -12.84928 -12.49505 -12.07081 -11.80540 -11.76097 -11.68695 -11.59887 -11.46576 -11.26177 -11.11180 -10.92788 -10.70862 -10.48853 -10.35897 -10.26481 -9.81883 -9.46763 -8.44470 -8.19957 -8.12912 -7.95981 -7.29978 -6.95206 -4.55011 1.72245 1.82245 2.61316 2.91589 2.96000 2.98181 3.12363 3.76923 4.18381 4.22378 4.52744 5.10289 5.27039 5.33531 5.44350 5.50249 5.51024 5.60361 5.66778 5.99237 6.02290 6.18404 6.24637 6.30635 6.35233 6.43909 6.56818 6.60881 6.67706 6.79051 6.82070 6.87457 6.91941 6.98978 7.09190 7.24287 7.31683 7.43948 7.59457 7.70245 7.80157 7.87710 8.32795 8.56102 8.64012 9.56990 9.95847 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032874 B = 0.003940 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.539204 B = 7105.193505 C = 7666.041051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.006 3.994 3 N -0.443 5.443 4 C 0.008 3.992 5 C 0.015 3.985 6 C -0.116 4.116 7 C -0.130 4.130 8 C -0.113 4.113 9 C -0.102 4.102 10 C 0.123 3.877 11 O -0.571 6.571 12 C -0.067 4.067 13 C -0.100 4.100 14 C -0.127 4.127 15 C -0.137 4.137 16 C 0.077 3.923 17 C -0.442 4.442 18 H 0.086 0.914 19 C 0.074 3.926 20 N -0.784 5.784 21 Si 0.913 3.087 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.262 1.262 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.377 0.623 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.471 9.286 4.355 10.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.139 4.139 3 N -0.151 5.151 4 C -0.128 4.128 5 C 0.014 3.986 6 C -0.134 4.134 7 C -0.149 4.149 8 C -0.132 4.132 9 C -0.102 4.102 10 C 0.046 3.954 11 O -0.376 6.376 12 C -0.068 4.068 13 C -0.156 4.156 14 C -0.147 4.147 15 C -0.162 4.162 16 C 0.072 3.928 17 C -0.471 4.471 18 H 0.105 0.895 19 C -0.146 4.146 20 N -0.408 5.408 21 Si 0.737 3.263 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.186 1.186 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.224 0.776 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.139 0.861 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.445 9.517 3.736 10.326 hybrid contribution 0.164 -1.405 0.355 1.458 sum 1.609 8.112 4.091 9.227 Atomic orbital electron populations 1.20244 0.91069 1.01215 1.00248 1.21034 0.95115 0.88074 1.09658 1.66900 1.08336 1.30213 1.09660 1.18677 0.89120 0.90367 1.14623 1.18455 0.94022 0.92248 0.93832 1.21261 0.96622 0.96934 0.98630 1.20950 1.00470 0.93773 0.99658 1.20803 0.97374 0.99157 0.95821 1.19349 0.98362 0.93825 0.98688 1.20866 0.93290 0.84390 0.96856 1.86457 1.62142 1.25117 1.63864 1.19675 0.97446 0.92204 0.97449 1.20661 0.96638 1.02436 0.95896 1.21239 0.98445 0.93339 1.01722 1.21220 0.94751 0.96347 1.03858 1.18374 0.92359 0.93199 0.88873 1.19567 1.03571 0.92589 1.31398 0.89549 1.26027 0.94120 1.01740 0.92704 1.69761 1.18634 1.32823 1.19590 0.86275 0.80021 0.80099 0.79930 1.18695 1.20177 1.18611 0.93424 0.93265 0.91479 0.86331 0.86687 0.85949 0.92616 0.92556 0.77640 0.90870 0.91115 0.93458 0.88411 0.86083 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 9.58 36.01 0.35 -1.09 16 2 C 0.01 0.14 6.86 -81.81 -0.56 -0.42 16 3 N -0.44 -10.57 8.59 -5.39 -0.05 -10.61 16 4 C 0.01 0.17 5.45 -82.75 -0.45 -0.28 16 5 C 0.02 0.31 5.60 -104.89 -0.59 -0.27 16 6 C -0.12 -2.13 9.44 -39.18 -0.37 -2.50 16 7 C -0.13 -2.11 10.03 -39.64 -0.40 -2.51 16 8 C -0.11 -1.83 9.38 -39.47 -0.37 -2.20 16 9 C -0.10 -1.68 5.87 -104.68 -0.61 -2.29 16 10 C 0.12 1.56 6.12 36.01 0.22 1.78 16 11 O -0.57 -6.60 12.13 -35.23 -0.43 -7.03 16 12 C -0.07 -1.23 5.91 -104.23 -0.62 -1.85 16 13 C -0.10 -1.70 8.42 36.00 0.30 -1.40 16 14 C -0.13 -2.97 9.40 -39.55 -0.37 -3.34 16 15 C -0.14 -3.43 8.71 -39.01 -0.34 -3.77 16 16 C 0.08 1.95 5.54 -106.64 -0.59 1.36 16 17 C -0.44 -10.87 8.03 -37.84 -0.30 -11.17 16 18 H 0.09 2.00 7.02 -52.48 -0.37 1.63 16 19 C 0.07 1.73 5.18 -17.32 -0.09 1.64 16 20 N -0.78 -19.16 11.15 55.55 0.62 -18.54 16 21 Si 0.91 17.45 29.59 -169.99 -5.03 12.42 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 23 H -0.28 -5.20 7.11 56.52 0.40 -4.79 16 24 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.35 6.83 -51.93 -0.35 1.00 16 28 H 0.12 2.11 7.99 -52.49 -0.42 1.69 16 29 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.12 1.83 6.99 -52.49 -0.37 1.46 16 31 H 0.06 0.64 7.48 -51.93 -0.39 0.25 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.38 2.35 9.12 45.56 0.42 2.77 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.37 6.84 -51.92 -0.36 1.01 16 36 H 0.05 0.65 6.53 -51.93 -0.34 0.31 16 37 H 0.10 2.07 7.98 -52.49 -0.42 1.65 16 38 H 0.12 3.08 6.50 -52.49 -0.34 2.74 16 39 H 0.29 6.35 8.29 -40.82 -0.34 6.02 16 LS Contribution 324.49 15.07 4.89 4.89 Total: -1.00 -28.43 324.49 -8.97 -37.40 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -4.18 Total: 9.79 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -4.79 Total: -28.32 kcal Atomic # 7 Polarization: -29.72 SS G_CDS: 0.57 Total: -29.15 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.43 Total: -7.03 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.43 -8.97 -37.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243013145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.918 kcal (2) G-P(sol) polarization free energy of solvation -28.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds