Wall clock time and date at job start Tue Mar 31 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38866 * 119.25042 * 2 1 4 4 C 1.36884 * 119.80405 * 179.97438 * 3 2 1 5 5 C 1.41124 * 118.39199 * 359.97438 * 4 3 2 6 6 C 1.40885 * 120.71783 * 180.02562 * 5 4 3 7 7 H 1.08010 * 119.99625 * 154.35348 * 6 5 4 8 8 C 1.40065 * 120.00497 * 334.35661 * 6 5 4 9 9 N 1.30774 * 119.99831 * 343.86976 * 8 6 5 10 10 Si 1.86797 * 120.00158 * 163.86437 * 8 6 5 11 11 H 1.48506 * 109.47046 * 90.00464 * 10 8 6 12 12 H 1.48506 * 109.47216 * 210.00022 * 10 8 6 13 13 H 1.48491 * 109.47428 * 330.00360 * 10 8 6 14 14 C 1.41869 * 118.56136 * 0.02562 * 5 4 3 15 15 C 1.47824 * 119.99054 * 180.02562 * 14 5 4 16 16 C 1.39693 * 120.14766 * 308.62912 * 15 14 5 17 17 C 1.37902 * 119.84439 * 179.97438 * 16 15 14 18 18 C 1.38421 * 120.15195 * 0.02562 * 17 16 15 19 19 C 1.38376 * 120.30665 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.92805 * 180.02562 * 19 18 17 21 21 O 1.42906 * 109.46626 * 359.97438 * 20 19 18 22 22 C 1.37948 * 120.15066 * 359.73858 * 19 18 17 23 23 C 1.50698 * 120.07715 * 180.27684 * 22 19 18 24 24 N 1.31745 * 119.24869 * 179.73027 * 2 1 3 25 25 H 1.09000 * 109.47448 * 89.99451 * 1 2 3 26 26 H 1.09006 * 109.47196 * 329.99876 * 1 2 3 27 27 H 1.08997 * 109.47753 * 209.99641 * 1 2 3 28 28 H 1.08008 * 120.09991 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.80798 * 180.02562 * 4 3 2 30 30 H 0.96998 * 120.00065 * 179.97438 * 9 8 6 31 31 H 1.07999 * 120.08006 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.92383 * 179.97438 * 17 16 15 33 33 H 1.07995 * 119.84614 * 180.02562 * 18 17 16 34 34 H 1.08998 * 109.47308 * 119.99358 * 20 19 18 35 35 H 1.08999 * 109.47275 * 240.00029 * 20 19 18 36 36 H 0.96700 * 113.99667 * 179.97438 * 21 20 19 37 37 H 1.09007 * 109.47240 * 266.46230 * 23 22 19 38 38 H 1.09005 * 109.47466 * 26.46022 * 23 22 19 39 39 H 1.09003 * 109.47184 * 146.46008 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1855 1.2116 0.0000 4 6 3.5542 1.2248 0.0005 5 6 4.2373 -0.0101 0.0016 6 6 5.6454 -0.0537 0.0027 7 1 6.1588 -0.9131 0.4084 8 6 6.3798 1.0174 -0.5221 9 7 5.7922 1.9004 -1.2871 10 14 8.1983 1.1846 -0.1292 11 1 8.9944 0.4609 -1.1528 12 1 8.5756 2.6209 -0.1331 13 1 8.4706 0.6049 1.2105 14 6 3.4751 -1.2067 0.0016 15 6 4.1581 -2.5177 0.0033 16 6 5.1521 -2.7922 -0.9391 17 6 5.7855 -4.0171 -0.9314 18 6 5.4380 -4.9737 0.0067 19 6 4.4535 -4.7089 0.9423 20 6 4.0823 -5.7564 1.9602 21 8 4.8797 -6.9243 1.7542 22 6 3.8152 -3.4861 0.9492 23 6 2.7476 -3.1972 1.9729 24 7 2.1506 -1.1495 0.0054 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 0.8900 0.5139 27 1 -0.3634 -0.8900 0.5137 28 1 1.6349 2.1408 0.0004 29 1 4.0984 2.1577 0.0010 30 1 6.3006 2.6423 -1.6503 31 1 5.4245 -2.0466 -1.6713 32 1 6.5539 -4.2308 -1.6597 33 1 5.9376 -5.9312 0.0084 34 1 4.2594 -5.3675 2.9630 35 1 3.0285 -6.0124 1.8505 36 1 4.6944 -7.6417 2.3756 37 1 1.7696 -3.4380 1.5559 38 1 2.9228 -3.8034 2.8617 39 1 2.7780 -2.1412 2.2415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243013165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:41 Heat of formation + Delta-G solvation = -15.987511 kcal Electronic energy + Delta-G solvation = -21876.670978 eV Core-core repulsion = 18747.900755 eV Total energy + Delta-G solvation = -3128.770223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.35413 -38.12285 -36.35763 -34.36810 -32.51274 -32.17190 -30.85289 -29.51085 -27.87531 -26.55655 -25.39033 -24.31897 -22.38750 -20.87906 -20.08335 -19.60307 -17.40160 -17.24946 -15.88430 -15.60605 -14.86983 -14.66073 -14.57016 -14.20961 -13.99212 -13.61253 -13.13539 -12.85997 -12.75179 -12.46692 -11.96415 -11.85398 -11.72691 -11.66398 -11.52122 -11.42155 -11.21075 -11.05325 -10.95990 -10.66424 -10.44122 -10.17028 -10.13619 -9.77845 -9.41354 -8.46763 -8.06436 -7.92666 -7.86337 -7.31882 -6.91616 -4.51288 1.93804 2.06761 2.61070 2.94802 2.97807 3.03232 3.14182 3.79502 4.35196 4.42839 4.52133 5.25645 5.40813 5.44277 5.54900 5.61988 5.64882 5.76387 5.86680 6.04029 6.08331 6.26115 6.30507 6.31680 6.40470 6.44256 6.50534 6.55041 6.71767 6.79700 6.90695 6.94733 7.03285 7.09703 7.16540 7.31958 7.49396 7.63643 7.70313 7.73265 7.87901 7.91406 8.36767 8.57958 8.65810 9.58495 9.95163 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.007269 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.091870 B = 3851.220071 C = 5635.964432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.014 4.014 3 C -0.142 4.142 4 C -0.131 4.131 5 C 0.083 3.917 6 C -0.436 4.436 7 H 0.088 0.912 8 C 0.075 3.925 9 N -0.784 5.784 10 Si 0.908 3.092 11 H -0.266 1.266 12 H -0.274 1.274 13 H -0.258 1.258 14 C 0.018 3.982 15 C 0.025 3.975 16 C -0.088 4.088 17 C -0.138 4.138 18 C -0.111 4.111 19 C -0.109 4.109 20 C 0.125 3.875 21 O -0.570 6.570 22 C -0.072 4.072 23 C -0.098 4.098 24 N -0.443 5.443 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.285 0.715 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.375 0.625 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -7.144 4.252 8.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.155 4.155 3 C -0.162 4.162 4 C -0.157 4.157 5 C 0.079 3.921 6 C -0.465 4.465 7 H 0.106 0.894 8 C -0.144 4.144 9 N -0.409 5.409 10 Si 0.732 3.268 11 H -0.191 1.191 12 H -0.199 1.199 13 H -0.182 1.182 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.107 4.107 17 C -0.156 4.156 18 C -0.130 4.130 19 C -0.109 4.109 20 C 0.048 3.952 21 O -0.375 6.375 22 C -0.073 4.073 23 C -0.155 4.155 24 N -0.152 5.152 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.096 0.904 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.221 0.779 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.581 -7.297 3.628 8.301 hybrid contribution 1.140 0.869 0.412 1.492 sum -0.441 -6.428 4.040 7.604 Atomic orbital electron populations 1.20264 0.91645 1.00698 1.00406 1.20225 0.94763 0.88582 1.11963 1.21231 0.95401 0.97095 1.02504 1.21382 0.92617 0.98766 1.02917 1.18322 0.94059 0.90822 0.88934 1.19595 0.91044 1.02791 1.33043 0.89446 1.26009 1.01530 0.94332 0.92572 1.69765 1.38946 1.10798 1.21343 0.86286 0.81497 0.78450 0.80602 1.19082 1.19922 1.18153 1.19349 0.88286 0.91070 1.13343 1.18214 0.94373 0.91494 0.93522 1.21358 0.95206 0.95993 0.98122 1.20965 1.00891 0.94110 0.99660 1.20768 0.97694 0.99152 0.95350 1.19255 0.99261 0.94004 0.98388 1.20848 0.93317 0.84418 0.96615 1.86476 1.64629 1.26290 1.60104 1.19665 0.97785 0.92555 0.97274 1.20630 0.97104 1.02170 0.95574 1.66880 1.09549 1.29063 1.09673 0.93293 0.93036 0.92685 0.88492 0.85643 0.90413 0.85503 0.86872 0.86222 0.92812 0.92829 0.77851 0.91201 0.93485 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.15 36.00 0.37 -0.93 16 2 C -0.01 -0.31 6.79 -82.40 -0.56 -0.87 16 3 C -0.14 -3.23 9.64 -39.84 -0.38 -3.62 16 4 C -0.13 -3.27 8.74 -38.98 -0.34 -3.61 16 5 C 0.08 2.14 5.57 -106.41 -0.59 1.54 16 6 C -0.44 -10.91 7.24 -37.90 -0.27 -11.18 16 7 H 0.09 2.18 6.64 -52.48 -0.35 1.83 16 8 C 0.08 1.78 5.19 -17.32 -0.09 1.69 16 9 N -0.78 -19.05 10.97 55.55 0.61 -18.44 16 10 Si 0.91 17.92 29.59 -169.99 -5.03 12.89 16 11 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 12 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 13 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 14 C 0.02 0.44 5.37 -82.24 -0.44 0.00 16 15 C 0.02 0.56 5.01 -104.91 -0.53 0.03 16 16 C -0.09 -1.88 8.02 -39.16 -0.31 -2.19 16 17 C -0.14 -2.57 10.03 -39.64 -0.40 -2.97 16 18 C -0.11 -2.01 9.38 -39.46 -0.37 -2.38 16 19 C -0.11 -1.96 5.87 -104.68 -0.61 -2.58 16 20 C 0.13 1.74 6.11 36.01 0.22 1.96 16 21 O -0.57 -7.29 12.13 -35.23 -0.43 -7.72 16 22 C -0.07 -1.44 5.91 -104.20 -0.62 -2.06 16 23 C -0.10 -1.77 8.51 36.00 0.31 -1.46 16 24 N -0.44 -10.60 8.90 -5.45 -0.05 -10.65 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.10 1.94 8.06 -52.48 -0.42 1.51 16 29 H 0.13 3.17 6.29 -52.49 -0.33 2.84 16 30 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 31 H 0.13 2.83 7.41 -52.49 -0.39 2.44 16 32 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.12 1.99 6.99 -52.49 -0.37 1.63 16 34 H 0.05 0.69 7.48 -51.93 -0.39 0.30 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.38 2.75 9.12 45.56 0.42 3.16 16 37 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 38 H 0.05 0.70 6.50 -51.93 -0.34 0.36 16 39 H 0.07 1.37 6.99 -51.93 -0.36 1.00 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -28.43 322.92 -8.86 -37.29 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -4.20 Total: 10.38 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -4.63 Total: -28.62 kcal Atomic # 7 Polarization: -29.65 SS G_CDS: 0.56 Total: -29.09 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.43 Total: -7.72 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.43 -8.86 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243013165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.300 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds