Wall clock time and date at job start Tue Mar 31 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37956 * 119.92644 * 2 1 4 4 C 1.39588 * 119.85509 * 179.74806 * 3 2 1 5 5 C 1.47961 * 120.15025 * 180.27536 * 4 3 2 6 6 C 1.39894 * 119.45303 * 179.72579 * 5 4 3 7 7 C 1.36605 * 119.46336 * 179.76427 * 6 5 4 8 8 C 1.41301 * 118.41601 * 0.50208 * 7 6 5 9 9 C 1.41052 * 120.55082 * 179.72645 * 8 7 6 10 10 H 1.07999 * 119.99659 * 204.94449 * 9 8 7 11 11 C 1.40028 * 120.00368 * 24.94238 * 9 8 7 12 12 N 1.30782 * 120.00219 * 14.67913 * 11 9 8 13 13 Si 1.86805 * 119.99993 * 194.68560 * 11 9 8 14 14 H 1.48504 * 109.47048 * 89.99661 * 13 11 9 15 15 H 1.48493 * 109.46908 * 209.99743 * 13 11 9 16 16 H 1.48506 * 109.47064 * 329.99681 * 13 11 9 17 17 C 1.40948 * 118.89297 * 359.73864 * 8 7 6 18 18 C 1.50695 * 119.79952 * 180.02562 * 17 8 7 19 19 N 1.31263 * 120.39742 * 0.02562 * 17 8 7 20 20 C 1.39632 * 119.70593 * 0.25157 * 4 3 2 21 21 C 1.37918 * 119.85274 * 359.97438 * 20 4 3 22 22 C 1.38362 * 119.92835 * 180.22978 * 2 1 3 23 23 C 1.50703 * 119.85634 * 0.02562 * 22 2 1 24 24 O 1.42893 * 109.47614 * 180.23040 * 23 22 2 25 25 H 1.08999 * 109.46929 * 90.00390 * 1 2 3 26 26 H 1.08999 * 109.46731 * 210.00026 * 1 2 3 27 27 H 1.08991 * 109.47250 * 330.00301 * 1 2 3 28 28 H 1.08008 * 120.07090 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.26334 * 0.02562 * 6 5 4 30 30 H 1.08009 * 120.78796 * 180.24275 * 7 6 5 31 31 H 0.96992 * 120.00390 * 180.02562 * 12 11 9 32 32 H 1.08994 * 109.47393 * 269.98463 * 18 17 8 33 33 H 1.09003 * 109.46872 * 29.98630 * 18 17 8 34 34 H 1.08999 * 109.46861 * 149.97989 * 18 17 8 35 35 H 1.07999 * 120.07217 * 179.97438 * 20 4 3 36 36 H 1.07999 * 119.92211 * 179.97438 * 21 20 4 37 37 H 1.09005 * 109.46744 * 300.23285 * 23 22 2 38 38 H 1.09003 * 109.47082 * 60.22363 * 23 22 2 39 39 H 0.96694 * 114.00540 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1956 0.0000 4 6 3.5912 1.1939 0.0053 5 6 4.3359 2.4724 0.0115 6 6 5.7347 2.4536 0.0226 7 6 6.4225 3.6339 0.0234 8 6 5.6873 4.8406 0.0238 9 6 6.3516 6.0849 0.0304 10 1 5.8561 6.9594 0.4253 11 6 7.6536 6.1862 -0.4749 12 7 8.1484 5.2211 -1.2057 13 14 8.6839 7.6999 -0.1051 14 1 9.4528 7.4817 1.1466 15 1 9.6246 7.9447 -1.2276 16 1 7.7932 8.8767 0.0600 17 6 4.2791 4.7801 0.0177 18 6 3.4748 6.0545 0.0174 19 7 3.6641 3.6205 0.0123 20 6 4.2816 -0.0198 0.0053 21 6 3.5814 -1.2080 0.0005 22 6 2.1974 -1.1991 -0.0048 23 6 1.4389 -2.5014 -0.0106 24 8 2.3633 -3.5911 -0.0095 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5137 28 1 1.6552 2.1310 0.0004 29 1 6.2664 1.5136 0.0262 30 1 7.5025 3.6443 0.0280 31 1 9.0504 5.2911 -1.5554 32 1 3.2763 6.3591 1.0449 33 1 4.0359 6.8381 -0.4920 34 1 2.5307 5.8880 -0.5012 35 1 5.3616 -0.0280 0.0090 36 1 4.1143 -2.1473 0.0001 37 1 0.8086 -2.5586 0.8769 38 1 0.8154 -2.5547 -0.9031 39 1 1.9442 -4.4624 -0.0126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243187054.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:42 Heat of formation + Delta-G solvation = -19.053570 kcal Electronic energy + Delta-G solvation = -20958.334177 eV Core-core repulsion = 17829.431001 eV Total energy + Delta-G solvation = -3128.903177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.37249 -38.31522 -36.52158 -34.37949 -33.05680 -31.62964 -31.11170 -30.04571 -27.21844 -26.74263 -26.33850 -24.10233 -21.91099 -21.62382 -20.32887 -19.35643 -17.45585 -17.35753 -16.18192 -15.59500 -15.04395 -14.89876 -14.72078 -14.27196 -13.81318 -13.37830 -13.36716 -13.10949 -12.86191 -12.63050 -12.24319 -12.05989 -11.86302 -11.70236 -11.63245 -11.59051 -11.24501 -11.06144 -10.94276 -10.72229 -10.46370 -10.37172 -10.25797 -9.79566 -9.54141 -8.47682 -8.23470 -8.19675 -8.07405 -7.20781 -6.95203 -4.56067 1.54660 1.97370 2.64695 2.91383 2.94714 2.96965 3.15017 3.72539 4.19138 4.22966 4.64125 5.06904 5.22914 5.29977 5.36461 5.39912 5.45621 5.55661 5.74322 5.77912 5.93938 6.00178 6.05491 6.24617 6.30734 6.44693 6.55844 6.61265 6.63082 6.73654 6.80280 6.83091 6.96207 7.02629 7.08438 7.26033 7.34153 7.52358 7.59034 7.70770 7.79206 7.89688 8.30538 8.50720 8.61391 9.56916 9.88183 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032873 B = 0.003600 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.550500 B = 7775.125390 C = 8540.959453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.112 4.112 4 C 0.025 3.975 5 C -0.003 4.003 6 C -0.125 4.125 7 C -0.143 4.143 8 C 0.073 3.927 9 C -0.430 4.430 10 H 0.089 0.911 11 C 0.070 3.930 12 N -0.778 5.778 13 Si 0.916 3.084 14 H -0.265 1.265 15 H -0.275 1.275 16 H -0.258 1.258 17 C 0.008 3.992 18 C -0.071 4.071 19 N -0.446 5.446 20 C -0.141 4.141 21 C -0.089 4.089 22 C -0.130 4.130 23 C 0.127 3.873 24 O -0.569 6.569 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.129 0.871 29 H 0.102 0.898 30 H 0.129 0.871 31 H 0.287 0.713 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 -8.411 1.449 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.131 4.131 4 C 0.025 3.975 5 C -0.136 4.136 6 C -0.146 4.146 7 C -0.167 4.167 8 C 0.068 3.932 9 C -0.459 4.459 10 H 0.107 0.893 11 C -0.150 4.150 12 N -0.401 5.401 13 Si 0.740 3.260 14 H -0.190 1.190 15 H -0.200 1.200 16 H -0.182 1.182 17 C -0.138 4.138 18 C -0.129 4.129 19 N -0.154 5.154 20 C -0.160 4.160 21 C -0.107 4.107 22 C -0.131 4.131 23 C 0.050 3.950 24 O -0.374 6.374 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.147 0.853 29 H 0.120 0.880 30 H 0.147 0.853 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.816 -8.008 1.296 11.265 hybrid contribution 1.239 0.147 0.028 1.248 sum -6.577 -7.861 1.324 10.335 Atomic orbital electron populations 1.20765 0.91960 1.02267 1.01861 1.19457 0.95285 0.92392 1.01319 1.21053 0.93637 0.97019 1.01413 1.18710 0.92594 0.91573 0.94661 1.18755 0.89760 0.89994 1.15136 1.21324 0.94171 0.97988 1.01085 1.21370 1.00324 0.91124 1.03922 1.18432 0.91713 0.94039 0.88996 1.19719 0.97583 0.95697 1.32871 0.89296 1.26106 0.98118 0.98275 0.92508 1.69767 1.16499 1.32152 1.21723 0.86158 0.79556 0.81130 0.79150 1.18988 1.20009 1.18201 1.20999 0.91229 0.91925 1.09654 1.20256 0.98081 0.94177 1.00370 1.66720 1.41300 0.97753 1.09676 1.21210 0.99776 0.91594 1.03468 1.20701 0.93358 0.97659 0.98967 1.19330 0.94182 0.92546 1.06999 1.20813 0.90149 0.84774 0.99282 1.86485 1.36504 1.16708 1.97737 0.91546 0.92211 0.91524 0.85302 0.88046 0.85328 0.90229 0.93318 0.91471 0.93170 0.86213 0.85846 0.93025 0.93044 0.77738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.59 36.01 0.35 -1.01 16 2 C -0.08 -1.37 5.87 -104.68 -0.61 -1.98 16 3 C -0.11 -2.17 9.22 -39.18 -0.36 -2.53 16 4 C 0.03 0.54 5.88 -104.89 -0.62 -0.08 16 5 C 0.00 -0.06 6.74 -82.75 -0.56 -0.62 16 6 C -0.13 -2.99 9.38 -39.55 -0.37 -3.36 16 7 C -0.14 -3.63 8.73 -39.01 -0.34 -3.97 16 8 C 0.07 1.88 5.59 -106.64 -0.60 1.29 16 9 C -0.43 -10.57 8.16 -37.84 -0.31 -10.88 16 10 H 0.09 2.05 6.84 -52.49 -0.36 1.70 16 11 C 0.07 1.64 5.22 -17.33 -0.09 1.55 16 12 N -0.78 -18.83 10.83 55.55 0.60 -18.22 16 13 Si 0.92 17.29 29.58 -169.99 -5.03 12.26 16 14 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 15 H -0.28 -5.11 7.11 56.52 0.40 -4.70 16 16 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 17 C 0.01 0.19 6.86 -81.81 -0.56 -0.37 16 18 C -0.07 -1.47 9.58 36.00 0.34 -1.13 16 19 N -0.45 -11.06 9.30 -5.40 -0.05 -11.11 16 20 C -0.14 -2.69 9.42 -39.18 -0.37 -3.06 16 21 C -0.09 -1.53 9.36 -39.64 -0.37 -1.90 16 22 C -0.13 -2.06 5.89 -104.51 -0.62 -2.68 16 23 C 0.13 1.50 6.15 36.01 0.22 1.73 16 24 O -0.57 -6.55 12.12 -35.23 -0.43 -6.98 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.60 6.62 -51.93 -0.34 0.26 16 27 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.13 2.53 7.52 -52.48 -0.39 2.14 16 29 H 0.10 2.15 6.15 -52.49 -0.32 1.83 16 30 H 0.13 3.30 6.17 -52.48 -0.32 2.97 16 31 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.35 6.76 -51.93 -0.35 0.99 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.12 2.15 6.15 -52.49 -0.32 1.83 16 36 H 0.12 1.98 6.99 -52.49 -0.37 1.61 16 37 H 0.05 0.53 7.47 -51.93 -0.39 0.14 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.38 2.29 9.12 45.56 0.42 2.70 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -29.04 323.52 -8.89 -37.93 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -4.00 Total: 10.27 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -4.86 Total: -29.02 kcal Atomic # 7 Polarization: -29.88 SS G_CDS: 0.55 Total: -29.33 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.43 Total: -6.98 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.04 -8.89 -37.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243187054.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.877 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds