Wall clock time and date at job start Tue Mar 31 2020 05:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37956 * 119.92644 * 2 1 4 4 C 1.39588 * 119.85509 * 179.74806 * 3 2 1 5 5 C 1.47961 * 120.15025 * 180.27536 * 4 3 2 6 6 C 1.39894 * 119.45303 * 179.72579 * 5 4 3 7 7 C 1.36605 * 119.46336 * 179.76427 * 6 5 4 8 8 C 1.41301 * 118.41601 * 0.50208 * 7 6 5 9 9 C 1.41052 * 120.55082 * 179.72645 * 8 7 6 10 10 H 1.07999 * 119.99659 * 204.94449 * 9 8 7 11 11 C 1.40028 * 120.00368 * 24.94238 * 9 8 7 12 12 N 1.30782 * 120.00219 * 14.67913 * 11 9 8 13 13 Si 1.86805 * 119.99993 * 194.68560 * 11 9 8 14 14 H 1.48504 * 109.47048 * 89.99661 * 13 11 9 15 15 H 1.48493 * 109.46908 * 209.99743 * 13 11 9 16 16 H 1.48506 * 109.47064 * 329.99681 * 13 11 9 17 17 C 1.40948 * 118.89297 * 359.73864 * 8 7 6 18 18 C 1.50695 * 119.79952 * 180.02562 * 17 8 7 19 19 N 1.31263 * 120.39742 * 0.02562 * 17 8 7 20 20 C 1.39632 * 119.70593 * 0.25157 * 4 3 2 21 21 C 1.37918 * 119.85274 * 359.97438 * 20 4 3 22 22 C 1.38362 * 119.92835 * 180.22978 * 2 1 3 23 23 C 1.50703 * 119.85634 * 0.02562 * 22 2 1 24 24 O 1.42893 * 109.47614 * 180.23040 * 23 22 2 25 25 H 1.08999 * 109.46929 * 90.00390 * 1 2 3 26 26 H 1.08999 * 109.46731 * 210.00026 * 1 2 3 27 27 H 1.08991 * 109.47250 * 330.00301 * 1 2 3 28 28 H 1.08008 * 120.07090 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.26334 * 0.02562 * 6 5 4 30 30 H 1.08009 * 120.78796 * 180.24275 * 7 6 5 31 31 H 0.96992 * 120.00390 * 180.02562 * 12 11 9 32 32 H 1.08994 * 109.47393 * 269.98463 * 18 17 8 33 33 H 1.09003 * 109.46872 * 29.98630 * 18 17 8 34 34 H 1.08999 * 109.46861 * 149.97989 * 18 17 8 35 35 H 1.07999 * 120.07217 * 179.97438 * 20 4 3 36 36 H 1.07999 * 119.92211 * 179.97438 * 21 20 4 37 37 H 1.09005 * 109.46744 * 300.23285 * 23 22 2 38 38 H 1.09003 * 109.47082 * 60.22363 * 23 22 2 39 39 H 0.96694 * 114.00540 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1956 0.0000 4 6 3.5912 1.1939 0.0053 5 6 4.3359 2.4724 0.0115 6 6 5.7347 2.4536 0.0226 7 6 6.4225 3.6339 0.0234 8 6 5.6873 4.8406 0.0238 9 6 6.3516 6.0849 0.0304 10 1 5.8561 6.9594 0.4253 11 6 7.6536 6.1862 -0.4749 12 7 8.1484 5.2211 -1.2057 13 14 8.6839 7.6999 -0.1051 14 1 9.4528 7.4817 1.1466 15 1 9.6246 7.9447 -1.2276 16 1 7.7932 8.8767 0.0600 17 6 4.2791 4.7801 0.0177 18 6 3.4748 6.0545 0.0174 19 7 3.6641 3.6205 0.0123 20 6 4.2816 -0.0198 0.0053 21 6 3.5814 -1.2080 0.0005 22 6 2.1974 -1.1991 -0.0048 23 6 1.4389 -2.5014 -0.0106 24 8 2.3633 -3.5911 -0.0095 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5137 28 1 1.6552 2.1310 0.0004 29 1 6.2664 1.5136 0.0262 30 1 7.5025 3.6443 0.0280 31 1 9.0504 5.2911 -1.5554 32 1 3.2763 6.3591 1.0449 33 1 4.0359 6.8381 -0.4920 34 1 2.5307 5.8880 -0.5012 35 1 5.3616 -0.0280 0.0090 36 1 4.1143 -2.1473 0.0001 37 1 0.8086 -2.5586 0.8769 38 1 0.8154 -2.5547 -0.9031 39 1 1.9442 -4.4624 -0.0126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243187054.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:41 Heat of formation + Delta-G solvation = -36.050421 kcal Electronic energy + Delta-G solvation = -20959.071216 eV Core-core repulsion = 17829.431001 eV Total energy + Delta-G solvation = -3129.640216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89091 -39.91221 -37.50545 -36.11162 -34.53867 -33.10658 -32.86187 -31.58846 -28.86749 -28.04481 -27.76745 -25.61520 -23.53204 -23.11491 -21.99707 -20.86611 -19.27257 -18.31808 -17.71039 -17.16689 -16.55914 -16.18913 -15.93942 -15.73078 -15.35151 -15.01335 -14.80087 -14.44050 -14.24199 -14.01255 -13.73189 -13.46427 -13.37681 -13.29347 -13.06118 -13.03600 -12.74513 -12.66930 -12.51336 -12.20505 -11.88689 -11.65798 -11.55002 -11.30092 -11.11137 -10.24764 -9.95629 -9.90227 -9.56423 -8.91444 -8.69065 -6.41939 0.01930 0.56904 0.93557 1.13059 1.38478 1.52697 1.55891 2.14794 2.58680 3.01205 3.40586 3.69392 3.71667 3.93952 4.04763 4.19870 4.30276 4.39521 4.49589 4.54750 4.57895 4.63066 4.75108 4.83385 4.88129 4.96898 4.99629 5.01508 5.02984 5.10118 5.22902 5.25159 5.37353 5.48601 5.49798 5.71925 5.75461 5.82395 5.97239 6.06048 6.20630 6.44911 6.67573 6.75427 7.01194 7.69364 8.16403 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032873 B = 0.003600 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.550500 B = 7775.125390 C = 8540.959453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.013 4.013 5 C -0.010 4.010 6 C -0.136 4.136 7 C -0.164 4.164 8 C 0.042 3.958 9 C -0.455 4.455 10 H 0.097 0.903 11 C 0.031 3.969 12 N -0.811 5.811 13 Si 0.992 3.008 14 H -0.262 1.262 15 H -0.268 1.268 16 H -0.250 1.250 17 C -0.014 4.014 18 C -0.064 4.064 19 N -0.460 5.460 20 C -0.148 4.148 21 C -0.096 4.096 22 C -0.123 4.123 23 C 0.129 3.871 24 O -0.589 6.589 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.294 0.706 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.217 -9.666 1.660 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.083 4.083 3 C -0.143 4.143 4 C -0.014 4.014 5 C -0.145 4.145 6 C -0.156 4.156 7 C -0.189 4.189 8 C 0.038 3.962 9 C -0.483 4.483 10 H 0.115 0.885 11 C -0.186 4.186 12 N -0.436 5.436 13 Si 0.811 3.189 14 H -0.186 1.186 15 H -0.193 1.193 16 H -0.173 1.173 17 C -0.159 4.159 18 C -0.121 4.121 19 N -0.168 5.168 20 C -0.167 4.167 21 C -0.114 4.114 22 C -0.123 4.123 23 C 0.052 3.948 24 O -0.398 6.398 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.154 0.846 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -9.486 -9.290 1.506 13.362 hybrid contribution 1.622 0.274 -0.053 1.646 sum -7.863 -9.016 1.452 12.051 Atomic orbital electron populations 1.20852 0.88622 1.03830 1.03314 1.19853 0.97641 0.91254 0.99523 1.21114 0.93010 0.98101 1.02100 1.18762 0.93611 0.90930 0.98085 1.19315 0.90203 0.91173 1.13786 1.21545 0.94643 0.98334 1.01125 1.21415 1.00012 0.92032 1.05434 1.18791 0.92569 0.94761 0.90108 1.19979 0.98845 0.95576 1.33913 0.88480 1.27012 0.98678 1.01363 0.91566 1.69821 1.17226 1.34140 1.22378 0.85043 0.77707 0.77175 0.78960 1.18648 1.19261 1.17339 1.21626 0.91593 0.93306 1.09396 1.20246 0.97924 0.92445 1.01485 1.66825 1.41464 0.98077 1.10455 1.21293 0.99998 0.91772 1.03653 1.20918 0.94412 0.97225 0.98812 1.19922 0.93966 0.94724 1.03694 1.20864 0.89661 0.82782 1.01525 1.86415 1.37420 1.18146 1.97838 0.89974 0.89289 0.91407 0.86479 0.86306 0.86327 0.89460 0.91821 0.91190 0.92110 0.86250 0.84572 0.90493 0.90654 0.74832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.59 71.24 0.68 -1.59 16 2 C -0.08 -2.51 5.87 -19.90 -0.12 -2.62 16 3 C -0.12 -4.82 9.22 22.53 0.21 -4.61 16 4 C -0.01 -0.57 5.88 -20.04 -0.12 -0.69 16 5 C -0.01 -0.52 6.74 41.94 0.28 -0.24 16 6 C -0.14 -6.87 9.38 22.29 0.21 -6.66 16 7 C -0.16 -8.82 8.73 22.64 0.20 -8.62 16 8 C 0.04 2.28 5.59 -21.17 -0.12 2.17 16 9 C -0.45 -23.02 8.16 23.39 0.19 -22.83 16 10 H 0.10 4.57 6.84 -2.91 -0.02 4.55 16 11 C 0.03 1.47 5.22 85.28 0.45 1.92 16 12 N -0.81 -40.52 10.83 21.84 0.24 -40.28 16 13 Si 0.99 35.45 29.58 68.60 2.03 37.48 16 14 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 15 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 16 H -0.25 -8.54 7.11 99.48 0.71 -7.83 16 17 C -0.01 -0.72 6.86 43.31 0.30 -0.43 16 18 C -0.06 -2.66 9.58 71.23 0.68 -1.98 16 19 N -0.46 -23.67 9.30 -170.98 -1.59 -25.26 16 20 C -0.15 -5.70 9.42 22.53 0.21 -5.49 16 21 C -0.10 -3.16 9.36 22.23 0.21 -2.96 16 22 C -0.12 -3.55 5.89 -19.79 -0.12 -3.67 16 23 C 0.13 2.45 6.15 71.24 0.44 2.89 16 24 O -0.59 -11.20 12.12 -148.98 -1.81 -13.00 16 25 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.34 6.62 -2.39 -0.02 1.32 16 27 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 28 H 0.12 4.71 7.52 -2.91 -0.02 4.69 16 29 H 0.12 5.32 6.15 -2.91 -0.02 5.31 16 30 H 0.12 6.47 6.17 -2.91 -0.02 6.45 16 31 H 0.29 13.18 8.29 -92.71 -0.77 12.41 16 32 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.07 2.84 6.76 -2.39 -0.02 2.82 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.12 4.43 6.15 -2.91 -0.02 4.41 16 36 H 0.14 4.11 6.99 -2.91 -0.02 4.09 16 37 H 0.08 1.14 7.47 -2.38 -0.02 1.13 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.40 3.14 9.12 -74.06 -0.68 2.47 16 Total: -1.00 -65.73 323.52 2.87 -62.86 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.41 Total: 33.60 kcal Atomic # 6 Polarization: -58.98 SS G_CDS: 3.58 Total: -55.40 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -1.35 Total: -65.54 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -1.81 Total: -13.00 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.03 Total: 37.48 kcal Total: -65.73 2.87 -62.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243187054.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.812 kcal (2) G-P(sol) polarization free energy of solvation -65.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds