Wall clock time and date at job start Tue Mar 31 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46630 * 2 1 4 4 C 1.50706 * 109.46999 * 119.99627 * 2 1 3 5 5 C 1.37774 * 119.95474 * 299.99892 * 4 2 1 6 6 C 1.39694 * 119.90871 * 180.02562 * 5 4 2 7 7 C 1.47837 * 120.08682 * 179.97438 * 6 5 4 8 8 C 1.39965 * 119.45534 * 179.97438 * 7 6 5 9 9 C 1.36559 * 119.46589 * 179.71987 * 8 7 6 10 10 C 1.41329 * 118.41971 * 0.27743 * 9 8 7 11 11 C 1.41026 * 120.55211 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00491 * 203.72189 * 11 10 9 13 13 C 1.40000 * 119.99634 * 23.72784 * 11 10 9 14 14 N 1.30812 * 119.99851 * 17.64151 * 13 11 10 15 15 Si 1.86795 * 120.00018 * 197.64542 * 13 11 10 16 16 H 1.48502 * 109.47223 * 59.99814 * 15 13 11 17 17 H 1.48503 * 109.47267 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47073 * 299.99758 * 15 13 11 19 19 C 1.40949 * 118.90380 * 0.02562 * 10 9 8 20 20 N 1.31257 * 120.40478 * 0.02562 * 19 10 9 21 21 C 1.39731 * 119.82506 * 0.25440 * 6 5 4 22 22 C 1.37733 * 119.91057 * 359.51433 * 21 6 5 23 23 C 1.38946 * 119.95670 * 120.02399 * 4 2 1 24 24 O 1.35798 * 119.91175 * 0.02562 * 23 4 2 25 25 H 1.09000 * 109.47068 * 300.00054 * 1 2 3 26 26 H 1.08995 * 109.47249 * 60.00399 * 1 2 3 27 27 H 1.09001 * 109.46750 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47215 * 239.99569 * 2 1 3 29 29 H 1.08993 * 109.47673 * 59.99850 * 3 2 1 30 30 H 1.09000 * 109.46728 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47414 * 299.99364 * 3 2 1 32 32 H 1.07999 * 120.04259 * 359.97438 * 5 4 2 33 33 H 1.08001 * 120.26723 * 359.97438 * 8 7 6 34 34 H 1.08000 * 120.79385 * 180.29967 * 9 8 7 35 35 H 0.97006 * 119.99610 * 179.97438 * 14 13 11 36 36 H 1.07997 * 119.80382 * 179.97438 * 19 10 9 37 37 H 1.07996 * 120.04375 * 179.74865 * 21 6 5 38 38 H 1.07997 * 119.95648 * 180.21161 * 22 21 6 39 39 H 0.96700 * 113.99737 * 89.99914 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2306 5 6 1.6990 -0.2388 2.4814 6 6 2.1656 -0.8976 3.6214 7 6 1.8107 -0.3947 4.9655 8 6 2.2850 -1.0654 6.0988 9 6 1.9620 -0.5976 7.3404 10 6 1.1482 0.5540 7.4347 11 6 0.7869 1.0753 8.6943 12 1 -0.1017 1.6810 8.7933 13 6 1.5802 0.8076 9.8163 14 7 2.8086 0.3847 9.6630 15 14 0.8847 1.0543 11.5323 16 1 -0.3023 0.1810 11.7156 17 1 1.9177 0.7045 12.5402 18 1 0.4860 2.4744 11.7054 19 6 0.7028 1.1723 6.2490 20 7 1.0395 0.6839 5.0781 21 6 2.9734 -2.0299 3.4879 22 6 3.2983 -2.4979 2.2339 23 6 2.8315 -1.8397 1.1021 24 8 3.1588 -2.3008 -0.1325 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.0784 0.6396 2.5804 33 1 2.9047 -1.9434 5.9920 34 1 2.3203 -1.0956 8.2293 35 1 3.3584 0.1996 10.4404 36 1 0.0799 2.0528 6.3041 37 1 3.3394 -2.5397 4.3669 38 1 3.9198 -3.3749 2.1299 39 1 3.9748 -1.9241 -0.4895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243239390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:38 Heat of formation + Delta-G solvation = -16.494496 kcal Electronic energy + Delta-G solvation = -21074.370265 eV Core-core repulsion = 17945.578058 eV Total energy + Delta-G solvation = -3128.792207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.73375 -38.36235 -36.32785 -35.22035 -34.19911 -31.01291 -30.81990 -29.51021 -28.41555 -26.99684 -25.39573 -23.44955 -22.54998 -21.46906 -20.66933 -19.39212 -18.08383 -17.53702 -16.21538 -15.71345 -15.40261 -15.06443 -14.42973 -14.24354 -13.82750 -13.56977 -13.36018 -13.30314 -13.02021 -12.71343 -12.22832 -12.08223 -11.89946 -11.71277 -11.56845 -11.49406 -11.34990 -11.29897 -11.01522 -10.93211 -10.74669 -10.40680 -10.01736 -9.86759 -9.55942 -8.57421 -8.40105 -8.34474 -8.13007 -7.29668 -7.02993 -4.61186 1.42926 1.83800 2.60212 2.89099 2.91325 2.93578 3.09667 3.68886 4.05740 4.49814 4.62255 4.87673 5.04437 5.29058 5.35310 5.52257 5.59181 5.59289 5.74837 5.76228 5.90600 5.98473 6.00342 6.05212 6.10228 6.28370 6.37386 6.40455 6.46650 6.53674 6.64199 6.72727 6.79839 6.88352 6.98000 7.11111 7.23574 7.28666 7.61904 7.70915 7.82630 7.95179 8.25386 8.44691 8.55220 9.49847 9.81421 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.031175 B = 0.003613 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.926266 B = 7748.857272 C = 8391.001080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C -0.144 4.144 4 C -0.099 4.099 5 C -0.095 4.095 6 C 0.018 3.982 7 C -0.011 4.011 8 C -0.120 4.120 9 C -0.145 4.145 10 C 0.069 3.931 11 C -0.432 4.432 12 H 0.087 0.913 13 C 0.072 3.928 14 N -0.774 5.774 15 Si 0.917 3.083 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.261 1.261 19 C -0.017 4.017 20 N -0.446 5.446 21 C -0.126 4.126 22 C -0.136 4.136 23 C 0.065 3.935 24 O -0.499 6.499 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.132 0.868 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.288 0.712 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 -1.698 -10.012 10.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.201 4.201 4 C -0.099 4.099 5 C -0.114 4.114 6 C 0.017 3.983 7 C -0.145 4.145 8 C -0.140 4.140 9 C -0.170 4.170 10 C 0.065 3.935 11 C -0.461 4.461 12 H 0.105 0.895 13 C -0.149 4.149 14 N -0.397 5.397 15 Si 0.740 3.260 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.186 1.186 19 C -0.183 4.183 20 N -0.153 5.153 21 C -0.145 4.145 22 C -0.155 4.155 23 C 0.021 3.979 24 O -0.307 6.307 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.119 0.881 34 H 0.145 0.855 35 H 0.099 0.901 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 0.642 -1.704 -10.562 10.718 hybrid contribution 0.678 -0.131 1.694 1.829 sum 1.321 -1.835 -8.869 9.152 Atomic orbital electron populations 1.21829 0.94528 1.01843 1.01725 1.19963 0.95912 0.95461 0.95701 1.21868 1.00847 0.95509 1.01902 1.20015 0.99692 0.95058 0.95183 1.20979 1.00147 1.00267 0.89964 1.18722 0.94184 0.93169 0.92193 1.18745 1.06496 0.98597 0.90630 1.21314 0.99774 0.99384 0.93573 1.21323 1.02524 0.96952 0.96225 1.18616 0.90486 0.90637 0.93811 1.19671 1.08311 1.26418 0.91651 0.89451 1.26103 0.93927 0.92481 1.02404 1.69786 1.06178 1.29908 1.33853 0.86205 0.79867 0.80284 0.79629 1.18436 1.20010 1.18558 1.22448 1.07226 1.01383 0.87241 1.66922 1.09433 1.10169 1.28815 1.21056 0.99799 0.96993 0.96654 1.21120 1.01695 1.00623 0.92018 1.18227 1.00798 0.94925 0.83957 1.84794 1.46310 1.68941 1.30690 0.92138 0.92840 0.92749 0.90336 0.92047 0.92943 0.92793 0.85016 0.88062 0.85539 0.90066 0.85311 0.85856 0.86261 0.76925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.00 37.16 0.33 -1.48 16 2 C -0.05 -0.69 3.05 -91.77 -0.28 -0.97 16 3 C -0.14 -1.74 9.00 37.16 0.33 -1.40 16 4 C -0.10 -1.59 4.79 -104.53 -0.50 -2.09 16 5 C -0.09 -1.76 8.22 -39.21 -0.32 -2.08 16 6 C 0.02 0.37 5.88 -104.87 -0.62 -0.25 16 7 C -0.01 -0.26 6.74 -82.76 -0.56 -0.82 16 8 C -0.12 -2.77 9.38 -39.54 -0.37 -3.14 16 9 C -0.15 -3.60 8.74 -39.01 -0.34 -3.94 16 10 C 0.07 1.75 5.59 -106.64 -0.60 1.16 16 11 C -0.43 -10.53 9.06 -37.87 -0.34 -10.87 16 12 H 0.09 2.00 7.91 -52.49 -0.41 1.58 16 13 C 0.07 1.65 5.17 -17.33 -0.09 1.56 16 14 N -0.77 -18.40 10.92 55.55 0.61 -17.80 16 15 Si 0.92 17.00 29.59 -169.99 -5.03 11.97 16 16 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 17 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 18 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 19 C -0.02 -0.42 10.97 -16.77 -0.18 -0.61 16 20 N -0.45 -10.75 9.38 -9.11 -0.09 -10.84 16 21 C -0.13 -2.23 9.41 -39.21 -0.37 -2.60 16 22 C -0.14 -2.15 9.97 -39.48 -0.39 -2.54 16 23 C 0.07 1.02 6.69 -39.04 -0.26 0.76 16 24 O -0.50 -6.58 12.25 -19.11 -0.23 -6.82 16 25 H 0.06 0.82 7.38 -51.93 -0.38 0.44 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.98 6.98 -51.93 -0.36 0.62 16 29 H 0.06 0.81 7.38 -51.93 -0.38 0.43 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.13 2.52 6.54 -52.49 -0.34 2.17 16 33 H 0.10 2.05 6.14 -52.49 -0.32 1.72 16 34 H 0.13 3.16 6.19 -52.49 -0.32 2.83 16 35 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 36 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 37 H 0.12 2.04 6.14 -52.49 -0.32 1.72 16 38 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.38 3.23 9.06 45.56 0.41 3.65 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -27.37 325.86 -8.51 -35.87 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -4.12 Total: 12.00 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -4.56 Total: -29.30 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: 0.52 Total: -28.63 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.23 Total: -6.82 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.37 -8.51 -35.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243239390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.376 kcal (2) G-P(sol) polarization free energy of solvation -27.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds