Wall clock time and date at job start Tue Mar 31 2020 06:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.37869 * 119.96257 * 299.99695 * 4 2 1 6 6 C 1.39446 * 119.93269 * 179.97438 * 5 4 2 7 7 C 1.48219 * 120.07174 * 180.02562 * 6 5 4 8 8 C 1.39956 * 119.61197 * 180.02562 * 7 6 5 9 9 C 1.38662 * 119.46545 * 180.02562 * 8 7 6 10 10 C 1.38311 * 118.69392 * 359.97438 * 9 8 7 11 11 C 1.40682 * 119.19864 * 0.02562 * 10 9 8 12 12 C 1.41358 * 119.77017 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00027 * 0.02562 * 12 11 10 14 14 C 1.40010 * 120.00103 * 180.02562 * 12 11 10 15 15 N 1.30743 * 120.00149 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99719 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47400 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47037 * 120.00234 * 16 14 12 19 19 H 1.48501 * 109.46934 * 239.99435 * 16 14 12 20 20 N 1.32252 * 119.61350 * 359.72518 * 7 6 5 21 21 C 1.39490 * 119.85663 * 0.02562 * 6 5 4 22 22 C 1.37830 * 119.92986 * 0.02562 * 21 6 5 23 23 C 1.38861 * 119.96507 * 119.72103 * 4 2 1 24 24 O 1.35824 * 119.93563 * 0.02562 * 23 4 2 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08007 * 120.03805 * 359.95605 * 5 4 2 33 33 H 1.08008 * 120.27056 * 0.02562 * 8 7 6 34 34 H 1.08002 * 120.65491 * 180.02562 * 9 8 7 35 35 H 1.07997 * 120.40553 * 179.97438 * 10 9 8 36 36 H 0.97001 * 120.00566 * 180.02562 * 15 14 12 37 37 H 1.07997 * 120.02889 * 179.97438 * 21 6 5 38 38 H 1.07999 * 119.96128 * 180.02562 * 22 21 6 39 39 H 0.96700 * 114.00124 * 89.99650 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.6989 -0.2388 2.4823 6 6 2.1636 -0.8971 3.6204 7 6 1.8065 -0.3930 4.9677 8 6 2.2787 -1.0608 6.1035 9 6 1.9424 -0.5869 7.3625 10 6 1.1453 0.5395 7.4569 11 6 0.7016 1.1671 6.2786 12 6 -0.1140 2.3187 6.3611 13 1 -0.3940 2.7141 7.3264 14 6 -0.5587 2.9468 5.1915 15 7 -0.2193 2.4685 4.0230 16 14 -1.6359 4.4691 5.3006 17 1 -1.8744 4.8055 6.7271 18 1 -0.9553 5.6061 4.6304 19 1 -2.9348 4.2054 4.6308 20 7 1.0504 0.6860 5.0826 21 6 2.9653 -2.0309 3.4881 22 6 3.2960 -2.4968 2.2338 23 6 2.8259 -1.8428 1.1021 24 8 3.1485 -2.3080 -0.1325 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.0786 0.6397 2.5815 33 1 2.9001 -1.9382 6.0002 34 1 2.2965 -1.0870 8.2518 35 1 0.8662 0.9321 8.4235 36 1 -0.5271 2.9039 3.2127 37 1 3.3271 -2.5426 4.3677 38 1 3.9163 -3.3748 2.1308 39 1 3.9652 -1.9356 -0.4921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243243746.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:44 Heat of formation + Delta-G solvation = -3.409860 kcal Electronic energy + Delta-G solvation = -21788.097316 eV Core-core repulsion = 18659.872501 eV Total energy + Delta-G solvation = -3128.224815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.70835 -38.17651 -36.28235 -35.09553 -33.61264 -31.22747 -30.44884 -29.38256 -28.06749 -26.82278 -25.64645 -23.14962 -22.81919 -21.25180 -20.55580 -19.26314 -18.02856 -17.42456 -16.08199 -15.42933 -15.17626 -14.71781 -14.65147 -14.10046 -13.68838 -13.46300 -13.22682 -13.20243 -12.91547 -12.55553 -12.32380 -11.90462 -11.68841 -11.55767 -11.43946 -11.20599 -11.14181 -11.01400 -10.82225 -10.76182 -10.53992 -10.27434 -9.96257 -9.79290 -9.48125 -8.69624 -8.26763 -8.06374 -7.66994 -7.17540 -6.47907 -4.57476 1.43495 1.89837 2.74812 3.00115 3.06419 3.10109 3.16086 3.90505 4.17308 4.55747 4.79240 4.98686 5.16738 5.29142 5.50410 5.58234 5.68162 5.82395 5.88536 5.92315 6.00174 6.07868 6.13420 6.19768 6.23913 6.34324 6.42402 6.54094 6.56321 6.59580 6.68987 6.71984 6.82921 6.98425 7.09974 7.24134 7.30617 7.44962 7.54517 7.67963 7.92772 7.99209 8.17611 8.60918 8.86162 9.99184 10.24584 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014585 B = 0.006471 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.373613 B = 4325.687330 C = 6056.787543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C -0.145 4.145 4 C -0.113 4.113 5 C -0.061 4.061 6 C -0.024 4.024 7 C 0.174 3.826 8 C -0.300 4.300 9 C -0.060 4.060 10 C -0.272 4.272 11 C 0.256 3.744 12 C -0.430 4.430 13 H 0.084 0.916 14 C 0.072 3.928 15 N -0.717 5.717 16 Si 0.906 3.094 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.273 1.273 20 N -0.467 5.467 21 C -0.102 4.102 22 C -0.154 4.154 23 C 0.089 3.911 24 O -0.499 6.499 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.160 0.840 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.271 0.729 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 -3.194 -7.281 8.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.203 4.203 4 C -0.113 4.113 5 C -0.080 4.080 6 C -0.025 4.025 7 C 0.030 3.970 8 C -0.324 4.324 9 C -0.084 4.084 10 C -0.295 4.295 11 C 0.131 3.869 12 C -0.462 4.462 13 H 0.102 0.898 14 C -0.153 4.153 15 N -0.339 5.339 16 Si 0.730 3.270 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.198 1.198 20 N -0.179 5.179 21 C -0.121 4.121 22 C -0.172 4.172 23 C 0.044 3.956 24 O -0.308 6.308 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.177 0.823 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.326 -3.004 -8.157 9.307 hybrid contribution 0.368 0.326 0.881 1.009 sum 3.694 -2.678 -7.276 8.588 Atomic orbital electron populations 1.21844 0.94409 1.01708 1.02113 1.19931 0.96037 0.95481 0.95280 1.21880 1.00563 0.95527 1.02289 1.20138 1.00368 0.95234 0.95608 1.21535 0.97073 0.99927 0.89415 1.18892 0.96513 0.94324 0.92736 1.19722 0.94210 0.92691 0.90339 1.21223 1.12507 1.05437 0.93200 1.20786 0.96274 0.95448 0.95875 1.21803 1.08091 1.00892 0.98666 1.18523 0.90227 0.91996 0.86174 1.19621 1.25198 1.07535 0.93814 0.89787 1.26011 0.95880 0.98325 0.95086 1.70074 1.31622 1.34104 0.98091 0.86294 0.79861 0.81116 0.79714 1.18461 1.19824 1.19820 1.68734 1.13353 1.09978 1.25879 1.21123 0.98110 0.96173 0.96686 1.21119 1.02816 1.01303 0.92002 1.18339 0.99252 0.94031 0.83967 1.84786 1.46353 1.69033 1.30647 0.92967 0.91497 0.92978 0.90590 0.91420 0.93186 0.92914 0.82258 0.88429 0.88471 0.88259 0.91763 0.85671 0.86151 0.76614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.01 37.16 0.33 -1.79 16 2 C -0.05 -0.72 3.05 -91.77 -0.28 -1.00 16 3 C -0.15 -2.03 9.00 37.15 0.33 -1.70 16 4 C -0.11 -1.95 4.79 -104.52 -0.50 -2.45 16 5 C -0.06 -1.24 8.22 -39.27 -0.32 -1.56 16 6 C -0.02 -0.50 5.88 -104.88 -0.62 -1.12 16 7 C 0.17 4.23 6.73 -82.94 -0.56 3.67 16 8 C -0.30 -6.74 9.47 -38.78 -0.37 -7.10 16 9 C -0.06 -1.33 10.15 -39.40 -0.40 -1.73 16 10 C -0.27 -6.59 9.83 -38.63 -0.38 -6.97 16 11 C 0.26 6.87 6.55 -85.01 -0.56 6.32 16 12 C -0.43 -11.20 9.14 -37.73 -0.34 -11.54 16 13 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 14 C 0.07 1.76 5.50 -17.35 -0.10 1.66 16 15 N -0.72 -17.92 11.10 55.55 0.62 -17.30 16 16 Si 0.91 18.08 29.56 -169.99 -5.02 13.06 16 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 N -0.47 -12.44 6.91 -7.69 -0.05 -12.49 16 21 C -0.10 -1.82 9.41 -39.26 -0.37 -2.19 16 22 C -0.15 -2.46 9.97 -39.48 -0.39 -2.85 16 23 C 0.09 1.43 6.68 -39.10 -0.26 1.17 16 24 O -0.50 -6.78 12.25 -19.19 -0.24 -7.01 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.11 7.38 -51.93 -0.38 0.72 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.03 6.98 -51.93 -0.36 0.67 16 29 H 0.07 1.08 7.38 -51.93 -0.38 0.70 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.16 3.58 6.20 -52.48 -0.33 3.26 16 33 H 0.10 1.91 6.17 -52.48 -0.32 1.58 16 34 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 36 H 0.27 6.12 8.29 -40.82 -0.34 5.78 16 37 H 0.13 2.04 6.16 -52.49 -0.32 1.72 16 38 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.38 3.36 9.06 45.56 0.41 3.78 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -28.72 326.75 -8.75 -37.46 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -4.19 Total: 10.56 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -4.78 Total: -29.20 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.56 Total: -29.79 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.24 Total: -7.01 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.06 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.72 -8.75 -37.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243243746.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.052 kcal (2) G-P(sol) polarization free energy of solvation -28.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds