Wall clock time and date at job start Tue Mar 31 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35904 * 116.99619 * 2 1 4 4 C 1.38902 * 119.98745 * 359.97438 * 3 2 1 5 5 C 1.38269 * 120.23788 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.89823 * 180.02562 * 5 4 3 7 7 C 1.37988 * 120.20611 * 359.97438 * 5 4 3 8 8 C 1.39609 * 119.96227 * 0.02708 * 7 5 4 9 9 C 1.47978 * 120.11581 * 179.97438 * 8 7 5 10 10 C 1.39893 * 119.45099 * 180.26664 * 9 8 7 11 11 C 1.36601 * 119.46922 * 180.25639 * 10 9 8 12 12 C 1.41311 * 118.41038 * 359.48342 * 11 10 9 13 13 C 1.41055 * 120.55104 * 180.27404 * 12 11 10 14 14 H 1.07997 * 119.99346 * 154.67680 * 13 12 11 15 15 C 1.40023 * 119.99960 * 334.67315 * 13 12 11 16 16 N 1.30784 * 120.00386 * 343.67988 * 15 13 12 17 17 Si 1.86800 * 119.99768 * 163.68059 * 15 13 12 18 18 H 1.48507 * 109.47159 * 60.00041 * 17 15 13 19 19 H 1.48496 * 109.47302 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47486 * 300.00389 * 17 15 13 21 21 C 1.40950 * 118.89016 * 0.25665 * 12 11 10 22 22 C 1.50700 * 119.79370 * 180.02562 * 21 12 11 23 23 N 1.31264 * 120.40435 * 0.02562 * 21 12 11 24 24 C 1.38430 * 119.98167 * 180.29463 * 3 2 1 25 25 H 1.09002 * 109.46987 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47767 * 299.99885 * 1 2 3 27 27 H 1.09001 * 109.47429 * 60.00597 * 1 2 3 28 28 H 1.08001 * 119.87698 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.47232 * 269.98036 * 6 5 4 30 30 H 1.09007 * 109.47183 * 29.97295 * 6 5 4 31 31 H 1.08994 * 109.47412 * 149.97542 * 6 5 4 32 32 H 1.08005 * 120.01846 * 180.02562 * 7 5 4 33 33 H 1.08006 * 120.26568 * 359.97438 * 10 9 8 34 34 H 1.07998 * 120.79577 * 179.76061 * 11 10 9 35 35 H 0.97008 * 119.99954 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.47126 * 90.00253 * 22 21 12 37 37 H 1.09003 * 109.46645 * 209.99529 * 22 21 12 38 38 H 1.08994 * 109.47270 * 329.99465 * 22 21 12 39 39 H 1.07998 * 120.10401 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2890 2.3757 -0.0005 5 6 1.9113 3.6104 0.0000 6 6 1.0827 4.8692 0.0000 7 6 3.2886 3.6937 0.0016 8 6 4.0576 2.5285 0.0021 9 6 5.5349 2.6139 0.0033 10 6 6.2919 1.4374 -0.0019 11 6 7.6556 1.5157 0.0045 12 6 8.2556 2.7952 0.0050 13 6 9.6598 2.9286 0.0056 14 1 10.1175 3.8214 -0.3941 15 6 10.4602 1.9036 0.5245 16 7 9.9303 0.9822 1.2866 17 14 12.2850 1.8521 0.1284 18 1 12.9330 3.0957 0.6173 19 1 12.9033 0.6777 0.7944 20 1 12.4697 1.7426 -1.3410 21 6 7.4274 3.9357 0.0044 22 6 8.0456 5.3100 0.0043 23 7 6.1210 3.8080 0.0039 24 6 3.4283 1.2831 -0.0062 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3635 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 0.2106 2.3165 -0.0005 29 1 0.8836 5.1731 -1.0277 30 1 0.1391 4.6830 0.5130 31 1 1.6258 5.6617 0.5146 32 1 3.7715 4.6598 0.0024 33 1 5.8019 0.4749 -0.0063 34 1 8.2609 0.6213 0.0046 35 1 10.4848 0.2719 1.6458 36 1 8.1950 5.6411 -1.0233 37 1 7.3827 6.0066 0.5177 38 1 9.0060 5.2764 0.5185 39 1 4.0179 0.3782 -0.0114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243243767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:13 Heat of formation + Delta-G solvation = -4.786857 kcal Electronic energy + Delta-G solvation = -21050.022227 eV Core-core repulsion = 17921.737701 eV Total energy + Delta-G solvation = -3128.284526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.80429 -38.59425 -37.07600 -34.36658 -32.90975 -31.30406 -30.90657 -29.23978 -27.70774 -27.11358 -26.18737 -25.00325 -22.42360 -21.52119 -20.45840 -19.64160 -17.49385 -17.31454 -16.02229 -15.57527 -15.53640 -15.40749 -14.60602 -14.48311 -13.81525 -13.48419 -13.42006 -13.13787 -12.83250 -12.66108 -12.20628 -12.07111 -11.89643 -11.72005 -11.66243 -11.56568 -11.37869 -11.28706 -10.99595 -10.85799 -10.74093 -10.47390 -10.38044 -9.84763 -9.52585 -8.57263 -8.27729 -8.08259 -7.76479 -7.26042 -6.98696 -4.57453 1.52598 1.95001 2.65626 2.91123 2.93523 2.95629 3.14888 3.50939 3.71643 4.17710 4.62184 5.01303 5.18974 5.19406 5.21644 5.38248 5.50660 5.53967 5.55089 5.77425 5.86650 5.89084 5.98599 6.03662 6.19462 6.31357 6.45385 6.50147 6.61289 6.69433 6.72062 6.80772 6.84028 6.97979 7.06374 7.21461 7.25203 7.31852 7.65946 7.76168 7.79163 7.87774 8.28601 8.48611 8.59754 9.55573 9.86049 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.025689 B = 0.003929 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.695182 B = 7124.889641 C = 8121.889619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.128 3.872 4 C -0.236 4.236 5 C -0.054 4.054 6 C -0.109 4.109 7 C -0.145 4.145 8 C 0.062 3.938 9 C -0.006 4.006 10 C -0.121 4.121 11 C -0.144 4.144 12 C 0.076 3.924 13 C -0.430 4.430 14 H 0.089 0.911 15 C 0.072 3.928 16 N -0.774 5.774 17 Si 0.916 3.084 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.260 1.260 21 C 0.008 3.992 22 C -0.071 4.071 23 N -0.442 5.442 24 C -0.171 4.171 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.117 0.883 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.127 0.873 35 H 0.288 0.712 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 0.598 -1.571 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.235 6.235 3 C 0.083 3.917 4 C -0.255 4.255 5 C -0.054 4.054 6 C -0.166 4.166 7 C -0.164 4.164 8 C 0.061 3.939 9 C -0.140 4.140 10 C -0.141 4.141 11 C -0.169 4.169 12 C 0.071 3.929 13 C -0.458 4.458 14 H 0.107 0.893 15 C -0.149 4.149 16 N -0.398 5.398 17 Si 0.739 3.261 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.185 1.185 21 C -0.138 4.138 22 C -0.129 4.129 23 N -0.151 5.151 24 C -0.190 4.190 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.135 0.865 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.148 0.852 33 H 0.121 0.879 34 H 0.144 0.856 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.576 0.907 -1.409 10.708 hybrid contribution 1.066 -0.972 -0.040 1.443 sum -9.510 -0.066 -1.450 9.621 Atomic orbital electron populations 1.22938 0.79280 1.03167 1.01032 1.86045 1.20672 1.27533 1.89298 1.18758 0.92000 0.83609 0.97295 1.20853 0.98877 0.91919 1.13887 1.19547 0.93942 0.94062 0.97874 1.20744 0.98814 0.95148 1.01906 1.21056 0.91895 0.98994 1.04487 1.18394 0.91698 0.91426 0.92403 1.18636 0.90479 0.88995 1.15893 1.21329 0.94984 0.97205 1.00630 1.21302 0.92934 0.98369 1.04251 1.18432 0.94124 0.91609 0.88759 1.19693 0.90955 1.02689 1.32466 0.89250 1.26106 1.02194 0.94138 0.92509 1.69774 1.39114 1.10405 1.20462 0.86223 0.80655 0.79042 0.80170 1.18562 1.20042 1.18464 1.20997 0.88174 0.94920 1.09746 1.20257 0.99728 0.92505 1.00397 1.66701 1.12574 1.26409 1.09371 1.20380 0.90859 0.98219 1.09574 0.88832 0.93027 0.93046 0.86535 0.91501 0.92191 0.91478 0.85242 0.87933 0.85573 0.90093 0.93294 0.93132 0.91461 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -5.02 10.49 -19.44 -0.20 -5.22 16 3 C 0.13 2.22 6.68 -39.27 -0.26 1.96 16 4 C -0.24 -3.70 8.69 -39.32 -0.34 -4.05 16 5 C -0.05 -0.88 5.87 -104.70 -0.61 -1.50 16 6 C -0.11 -1.35 10.01 36.01 0.36 -0.99 16 7 C -0.15 -2.80 9.22 -39.16 -0.36 -3.16 16 8 C 0.06 1.31 5.88 -104.91 -0.62 0.70 16 9 C -0.01 -0.16 6.74 -82.74 -0.56 -0.71 16 10 C -0.12 -2.89 9.38 -39.55 -0.37 -3.26 16 11 C -0.14 -3.64 8.73 -39.01 -0.34 -3.98 16 12 C 0.08 1.94 5.58 -106.63 -0.59 1.34 16 13 C -0.43 -10.47 8.14 -37.85 -0.31 -10.78 16 14 H 0.09 2.04 6.86 -52.49 -0.36 1.68 16 15 C 0.07 1.65 5.18 -17.33 -0.09 1.56 16 16 N -0.77 -18.63 10.95 55.55 0.61 -18.02 16 17 Si 0.92 17.13 29.59 -169.99 -5.03 12.10 16 18 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 19 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 21 C 0.01 0.19 6.86 -81.81 -0.56 -0.37 16 22 C -0.07 -1.46 9.58 36.01 0.34 -1.11 16 23 N -0.44 -10.89 9.30 -5.39 -0.05 -10.94 16 24 C -0.17 -3.33 9.35 -39.02 -0.36 -3.69 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 27 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 28 H 0.12 1.49 6.28 -52.49 -0.33 1.16 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.63 8.08 -51.92 -0.42 0.21 16 31 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.13 2.54 7.52 -52.48 -0.39 2.14 16 33 H 0.10 2.19 6.15 -52.48 -0.32 1.87 16 34 H 0.13 3.21 6.26 -52.49 -0.33 2.88 16 35 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.33 6.76 -51.93 -0.35 0.98 16 39 H 0.13 2.42 6.15 -52.49 -0.32 2.10 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -27.87 325.66 -8.33 -36.20 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -4.87 Total: 7.70 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -3.69 Total: -26.72 kcal Atomic # 7 Polarization: -29.52 SS G_CDS: 0.56 Total: -28.96 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.20 Total: -5.22 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.87 -8.33 -36.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243243767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.410 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds