Wall clock time and date at job start Tue Mar 31 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47336 * 2 1 4 4 C 1.50700 * 109.47184 * 119.99932 * 2 1 3 5 5 C 1.37929 * 119.96908 * 300.02082 * 4 2 1 6 6 C 1.39344 * 119.93362 * 179.97438 * 5 4 2 7 7 C 1.48382 * 120.06425 * 180.02562 * 6 5 4 8 8 C 1.39733 * 120.41253 * 359.71819 * 7 6 5 9 9 N 1.31911 * 121.15011 * 179.70044 * 8 7 6 10 10 C 1.31518 * 122.11866 * 0.59126 * 9 8 7 11 11 C 1.40781 * 120.67119 * 359.70409 * 10 9 8 12 12 C 1.41437 * 120.60157 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00453 * 335.73986 * 12 11 10 14 14 C 1.39935 * 119.99709 * 155.73844 * 12 11 10 15 15 N 1.30828 * 119.99841 * 343.64508 * 14 12 11 16 16 Si 1.86801 * 120.00039 * 163.64833 * 14 12 11 17 17 H 1.48499 * 109.46909 * 60.00005 * 16 14 12 18 18 H 1.48500 * 109.46998 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47043 * 299.99843 * 16 14 12 20 20 C 1.39153 * 120.41527 * 180.02562 * 7 6 5 21 21 C 1.39396 * 119.87361 * 359.70394 * 6 5 4 22 22 C 1.37883 * 119.93332 * 0.57245 * 21 6 5 23 23 C 1.38812 * 119.96401 * 120.00105 * 4 2 1 24 24 O 1.35868 * 119.94200 * 0.02562 * 23 4 2 25 25 H 1.09007 * 109.46840 * 299.99843 * 1 2 3 26 26 H 1.08999 * 109.47334 * 59.99823 * 1 2 3 27 27 H 1.08995 * 109.46898 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47142 * 239.99875 * 2 1 3 29 29 H 1.09005 * 109.47314 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46846 * 300.00240 * 3 2 1 31 31 H 1.09001 * 109.47107 * 59.99854 * 3 2 1 32 32 H 1.07999 * 120.03270 * 359.97438 * 5 4 2 33 33 H 1.08001 * 119.42392 * 0.02562 * 8 7 6 34 34 H 1.07999 * 119.66455 * 179.67652 * 10 9 8 35 35 H 0.97001 * 120.00262 * 179.97438 * 15 14 12 36 36 H 1.07995 * 120.94946 * 0.02562 * 20 7 6 37 37 H 1.08006 * 120.02983 * 180.32317 * 21 6 5 38 38 H 1.07998 * 119.96523 * 179.72756 * 22 21 6 39 39 H 0.96703 * 113.99983 * 270.03242 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6984 -0.2388 2.4829 6 6 2.1629 -0.8966 3.6201 7 6 1.8049 -0.3921 4.9689 8 6 1.0067 0.7461 5.1095 9 7 0.6749 1.2038 6.3014 10 6 1.0824 0.6264 7.4105 11 6 1.8951 -0.5223 7.3654 12 6 2.3330 -1.1418 8.5591 13 1 2.3982 -0.5689 9.4724 14 6 2.6817 -2.4969 8.5569 15 7 2.3112 -3.2661 7.5656 16 14 3.6763 -3.2078 9.9693 17 1 2.9275 -3.0322 11.2396 18 1 3.9119 -4.6543 9.7300 19 1 4.9796 -2.5021 10.0613 20 6 2.2651 -1.0430 6.1095 21 6 2.9589 -2.0333 3.4883 22 6 3.2942 -2.4968 2.2337 23 6 2.8304 -1.8389 1.1022 24 8 3.1579 -2.3012 -0.1327 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.0776 0.6393 2.5820 33 1 0.6510 1.2571 4.2270 34 1 0.7911 1.0379 8.3656 35 1 2.5532 -4.2054 7.5638 36 1 2.8881 -1.9219 6.0342 37 1 3.3159 -2.5481 4.3681 38 1 3.9145 -3.3748 2.1311 39 1 2.5311 -2.9446 -0.4908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243251221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:51 Heat of formation + Delta-G solvation = -16.069689 kcal Electronic energy + Delta-G solvation = -21382.547130 eV Core-core repulsion = 18253.773344 eV Total energy + Delta-G solvation = -3128.773786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.90154 -38.35293 -36.45705 -35.30393 -34.15763 -31.59053 -30.52582 -29.58197 -27.62010 -27.09781 -25.74809 -23.50029 -22.79819 -21.61518 -20.59859 -19.33904 -18.19153 -17.43499 -16.04047 -15.79766 -15.36139 -15.19413 -14.79902 -14.35895 -13.83960 -13.68266 -13.47582 -13.25131 -13.02415 -12.63926 -12.32800 -12.22064 -11.96323 -11.67046 -11.53949 -11.47791 -11.31138 -11.29060 -11.08198 -11.01252 -10.66484 -10.60314 -10.05300 -9.84605 -9.44741 -9.03562 -8.46775 -8.18070 -7.92403 -7.21403 -6.90628 -4.57967 1.30661 1.70398 2.62594 2.89336 2.97531 2.99864 3.13669 3.79355 4.05246 4.44265 4.57867 4.76327 4.92513 5.24589 5.28817 5.41617 5.52329 5.59301 5.65007 5.66502 5.75763 5.87333 5.91297 5.98641 6.00728 6.13898 6.27079 6.28642 6.34023 6.45470 6.61683 6.70124 6.75012 6.81152 6.97725 7.07588 7.14560 7.22108 7.60925 7.75793 7.82748 7.84976 8.32679 8.58646 8.61432 9.53524 9.98410 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021352 B = 0.004590 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.020879 B = 6099.229385 C = 7155.398832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C -0.142 4.142 4 C -0.101 4.101 5 C -0.101 4.101 6 C -0.012 4.012 7 C -0.094 4.094 8 C -0.023 4.023 9 N -0.470 5.470 10 C -0.016 4.016 11 C 0.061 3.939 12 C -0.450 4.450 13 H 0.084 0.916 14 C 0.075 3.925 15 N -0.792 5.792 16 Si 0.913 3.087 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.115 4.115 21 C -0.102 4.102 22 C -0.140 4.140 23 C 0.081 3.919 24 O -0.498 6.498 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.285 0.715 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 -0.530 -11.640 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.200 4.200 4 C -0.102 4.102 5 C -0.119 4.119 6 C -0.012 4.012 7 C -0.096 4.096 8 C -0.181 4.181 9 N -0.177 5.177 10 C -0.177 4.177 11 C 0.057 3.943 12 C -0.479 4.479 13 H 0.102 0.898 14 C -0.144 4.144 15 N -0.417 5.417 16 Si 0.737 3.263 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.140 4.140 21 C -0.120 4.120 22 C -0.158 4.158 23 C 0.037 3.963 24 O -0.307 6.307 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.424 0.333 -11.605 11.617 hybrid contribution 0.579 -1.675 0.559 1.858 sum 1.002 -1.342 -11.046 11.172 Atomic orbital electron populations 1.21875 0.94609 1.01798 1.01893 1.19979 0.95467 0.95980 0.95689 1.21836 1.01264 0.95143 1.01722 1.19968 0.98373 0.96771 0.95066 1.20944 1.00297 1.00132 0.90529 1.18994 0.95400 0.94014 0.92831 1.19443 1.01239 0.97484 0.91472 1.21773 1.04758 0.97343 0.94208 1.66943 1.20870 1.31161 0.98706 1.22564 1.01637 0.98651 0.94856 1.18470 0.90015 0.92158 0.93647 1.19540 1.37954 0.94342 0.96109 0.89805 1.25965 0.93906 0.97158 0.97345 1.69767 1.34201 1.06983 1.30732 0.86274 0.80812 0.77994 0.81228 1.18769 1.20180 1.18645 1.21860 1.00914 1.00693 0.90582 1.21261 0.97624 0.96121 0.97026 1.21248 1.01863 1.00686 0.92007 1.18238 0.98883 0.95077 0.84092 1.84802 1.52376 1.63026 1.30538 0.92209 0.92643 0.92800 0.90143 0.92617 0.92695 0.92292 0.85559 0.86135 0.85530 0.90440 0.84886 0.84970 0.85944 0.76541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.01 37.16 0.33 -1.24 16 2 C -0.05 -0.64 3.05 -91.77 -0.28 -0.92 16 3 C -0.14 -1.64 9.01 37.16 0.33 -1.31 16 4 C -0.10 -1.52 4.79 -104.52 -0.50 -2.02 16 5 C -0.10 -1.71 8.09 -39.28 -0.32 -2.03 16 6 C -0.01 -0.23 5.88 -104.88 -0.62 -0.84 16 7 C -0.09 -2.15 5.88 -104.82 -0.62 -2.77 16 8 C -0.02 -0.52 10.60 -16.96 -0.18 -0.70 16 9 N -0.47 -11.51 10.32 -12.28 -0.13 -11.63 16 10 C -0.02 -0.40 10.96 -16.73 -0.18 -0.59 16 11 C 0.06 1.58 5.59 -106.71 -0.60 0.99 16 12 C -0.45 -11.28 9.09 -37.73 -0.34 -11.62 16 13 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 14 C 0.07 1.77 5.20 -17.34 -0.09 1.68 16 15 N -0.79 -19.21 10.90 55.55 0.61 -18.60 16 16 Si 0.91 17.65 29.59 -169.99 -5.03 12.62 16 17 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 18 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 C -0.12 -2.86 8.16 -38.23 -0.31 -3.17 16 21 C -0.10 -1.88 9.43 -39.28 -0.37 -2.25 16 22 C -0.14 -2.22 9.97 -39.48 -0.39 -2.62 16 23 C 0.08 1.22 6.68 -39.14 -0.26 0.96 16 24 O -0.50 -6.33 12.25 -19.33 -0.24 -6.57 16 25 H 0.06 0.69 7.38 -51.92 -0.38 0.31 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.93 6.98 -51.93 -0.36 0.57 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.06 0.70 7.39 -51.93 -0.38 0.32 16 32 H 0.13 2.02 5.24 -52.49 -0.28 1.75 16 33 H 0.12 2.42 6.20 -52.49 -0.33 2.09 16 34 H 0.13 2.90 8.06 -52.49 -0.42 2.48 16 35 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 36 H 0.13 3.30 4.45 -52.49 -0.23 3.07 16 37 H 0.13 2.52 6.26 -52.48 -0.33 2.19 16 38 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.38 3.08 9.06 45.56 0.41 3.50 16 LS Contribution 323.59 15.07 4.88 4.88 Total: -1.00 -27.94 323.59 -8.27 -36.21 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -3.96 Total: 11.56 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -4.39 Total: -28.46 kcal Atomic # 7 Polarization: -30.71 SS G_CDS: 0.48 Total: -30.23 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.24 Total: -6.57 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.94 -8.27 -36.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243251221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.142 kcal (2) G-P(sol) polarization free energy of solvation -27.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds