Wall clock time and date at job start Tue Mar 31 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38890 * 119.24080 * 2 1 4 4 C 1.36877 * 119.81003 * 180.02562 * 3 2 1 5 5 C 1.41121 * 118.40108 * 0.27077 * 4 3 2 6 6 C 1.40846 * 120.71812 * 179.73089 * 5 4 3 7 7 H 1.08005 * 119.99764 * 151.28312 * 6 5 4 8 8 C 1.40047 * 120.00363 * 331.28247 * 6 5 4 9 9 N 1.30794 * 119.99480 * 348.65690 * 8 6 5 10 10 Si 1.86796 * 120.00090 * 168.66604 * 8 6 5 11 11 H 1.48498 * 109.47480 * 90.00090 * 10 8 6 12 12 H 1.48506 * 109.46852 * 209.99797 * 10 8 6 13 13 H 1.48497 * 109.47211 * 329.99185 * 10 8 6 14 14 C 1.41926 * 118.55512 * 359.48724 * 5 4 3 15 15 C 1.47677 * 119.99571 * 180.22831 * 14 5 4 16 16 C 1.39788 * 120.09095 * 316.01902 * 15 14 5 17 17 C 1.37737 * 119.90191 * 179.76704 * 16 15 14 18 18 C 1.50695 * 119.95166 * 180.23157 * 17 16 15 19 19 C 1.38993 * 120.09459 * 0.51929 * 17 16 15 20 20 O 1.35778 * 119.90671 * 179.71595 * 19 17 16 21 21 C 1.38999 * 120.18871 * 359.73550 * 19 17 16 22 22 C 1.50698 * 119.95006 * 179.97438 * 21 19 17 23 23 C 1.37726 * 120.09552 * 0.02562 * 21 19 17 24 24 N 1.31721 * 119.24381 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46740 * 90.00382 * 1 2 3 26 26 H 1.08997 * 109.47418 * 210.00009 * 1 2 3 27 27 H 1.09001 * 109.47696 * 330.00548 * 1 2 3 28 28 H 1.07999 * 120.09085 * 359.97025 * 3 2 1 29 29 H 1.07995 * 120.79651 * 180.02562 * 4 3 2 30 30 H 0.96999 * 119.99562 * 180.02562 * 9 8 6 31 31 H 1.07994 * 120.04906 * 0.02562 * 16 15 14 32 32 H 1.09001 * 109.47318 * 270.28514 * 18 17 16 33 33 H 1.08999 * 109.47315 * 30.28249 * 18 17 16 34 34 H 1.08997 * 109.47118 * 150.28511 * 18 17 16 35 35 H 0.96695 * 114.00392 * 270.02072 * 20 19 17 36 36 H 1.09006 * 109.47220 * 270.02120 * 22 21 19 37 37 H 1.08997 * 109.47283 * 30.01941 * 22 21 19 38 38 H 1.09004 * 109.47129 * 150.02474 * 22 21 19 39 39 H 1.07996 * 120.04798 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2119 0.0000 4 6 3.5542 1.2255 -0.0005 5 6 4.2377 -0.0091 -0.0069 6 6 5.6455 -0.0520 -0.0134 7 1 6.1622 -0.8896 0.4314 8 6 6.3752 0.9913 -0.5967 9 7 5.7641 1.8888 -1.3259 10 14 8.2213 1.1009 -0.3335 11 1 8.9198 0.3459 -1.4046 12 1 8.6436 2.5240 -0.3752 13 1 8.5682 0.5202 0.9884 14 6 3.4757 -1.2064 -0.0014 15 6 4.1583 -2.5160 -0.0027 16 6 5.2499 -2.7365 -0.8476 17 6 5.8867 -3.9578 -0.8422 18 6 7.0668 -4.1950 -1.7488 19 6 5.4386 -4.9737 -0.0061 20 8 6.0656 -6.1781 -0.0081 21 6 4.3502 -4.7604 0.8317 22 6 3.8686 -5.8659 1.7356 23 6 3.7108 -3.5406 0.8362 24 7 2.1505 -1.1493 -0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6346 2.1409 -0.0005 29 1 4.0978 2.1586 -0.0001 30 1 6.2696 2.6112 -1.7302 31 1 5.5960 -1.9490 -1.5006 32 1 6.7175 -4.5810 -2.7065 33 1 7.5977 -3.2563 -1.9073 34 1 7.7388 -4.9193 -1.2885 35 1 5.7026 -6.8094 -0.6442 36 1 3.1191 -6.4612 1.2140 37 1 4.7097 -6.5017 2.0120 38 1 3.4285 -5.4343 2.6347 39 1 2.8650 -3.3759 1.4872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243307062.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:38 Heat of formation + Delta-G solvation = -31.974613 kcal Electronic energy + Delta-G solvation = -21795.905004 eV Core-core repulsion = 18666.441528 eV Total energy + Delta-G solvation = -3129.463475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07811 -40.11419 -37.46012 -36.15315 -34.44492 -33.74392 -32.69030 -30.95983 -29.59833 -27.85062 -27.37616 -26.13311 -24.16166 -22.67293 -21.59351 -21.35412 -19.30366 -19.04484 -17.45953 -17.04766 -16.77406 -16.33249 -16.00044 -15.65982 -14.89902 -14.75146 -14.50192 -14.15013 -14.02819 -13.97502 -13.80033 -13.57214 -13.49226 -13.19522 -13.06669 -12.93941 -12.80309 -12.66861 -12.60511 -12.42584 -12.20449 -12.08230 -11.60459 -11.25034 -11.13712 -10.26486 -9.94922 -9.61320 -9.39684 -8.94062 -8.66071 -6.39791 0.12758 0.52909 0.83719 1.13297 1.35030 1.44770 1.49300 2.14705 2.66234 2.79644 3.42457 3.61607 3.78154 3.96433 4.02773 4.32171 4.40777 4.53118 4.55357 4.61761 4.72629 4.78115 4.81924 4.84757 4.91490 4.96226 4.98294 5.01662 5.03632 5.17805 5.24501 5.27112 5.33001 5.43484 5.59362 5.64234 5.76554 5.85190 5.99909 6.04753 6.10604 6.49255 6.72158 6.78821 6.97235 7.70636 8.22209 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.007871 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.379828 B = 3556.321210 C = 5591.051760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.017 4.017 3 C -0.149 4.149 4 C -0.147 4.147 5 C 0.053 3.947 6 C -0.457 4.457 7 H 0.079 0.921 8 C 0.039 3.961 9 N -0.819 5.819 10 Si 0.973 3.027 11 H -0.257 1.257 12 H -0.263 1.263 13 H -0.262 1.262 14 C 0.002 3.998 15 C -0.008 4.008 16 C -0.099 4.099 17 C -0.119 4.119 18 C -0.102 4.102 19 C 0.089 3.911 20 O -0.492 6.492 21 C -0.117 4.117 22 C -0.099 4.099 23 C -0.111 4.111 24 N -0.467 5.467 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.292 0.708 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.402 0.598 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.372 -9.077 0.390 9.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.159 4.159 3 C -0.169 4.169 4 C -0.173 4.173 5 C 0.048 3.952 6 C -0.486 4.486 7 H 0.097 0.903 8 C -0.177 4.177 9 N -0.444 5.444 10 Si 0.794 3.206 11 H -0.181 1.181 12 H -0.187 1.187 13 H -0.186 1.186 14 C -0.135 4.135 15 C -0.008 4.008 16 C -0.118 4.118 17 C -0.120 4.120 18 C -0.159 4.159 19 C 0.044 3.956 20 O -0.304 6.304 21 C -0.117 4.117 22 C -0.156 4.156 23 C -0.130 4.130 24 N -0.176 5.176 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.146 0.854 29 H 0.135 0.865 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.260 0.740 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.275 -9.373 0.674 9.401 hybrid contribution 0.801 1.394 -0.437 1.666 sum 1.077 -7.980 0.238 8.055 Atomic orbital electron populations 1.20347 0.87952 1.02466 1.01833 1.21122 0.97329 0.88088 1.09323 1.21587 0.94900 0.98647 1.01757 1.21481 0.93721 0.98393 1.03662 1.18693 0.95024 0.91540 0.89926 1.19615 0.91057 1.05523 1.32382 0.90267 1.26712 1.05649 0.93290 0.92048 1.69788 1.40480 1.11622 1.22527 0.85311 0.76196 0.78992 0.80139 1.18144 1.18722 1.18561 1.19908 0.88772 0.92368 1.12467 1.18532 0.94865 0.91556 0.95892 1.21083 0.95536 0.96396 0.98803 1.20310 0.99291 0.93441 0.98949 1.20651 0.94520 1.02583 0.98137 1.18028 0.93291 0.86794 0.97447 1.84667 1.59360 1.22012 1.64342 1.20309 0.95380 0.96250 0.99780 1.20642 1.01804 0.95567 0.97576 1.21000 0.99946 0.92480 0.99572 1.66992 1.09528 1.30101 1.10957 0.91851 0.92041 0.90213 0.85423 0.86468 0.89690 0.86868 0.89968 0.92232 0.90009 0.73998 0.89932 0.90291 0.91557 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.34 10.15 71.24 0.72 -1.62 16 2 C -0.02 -0.77 6.79 42.73 0.29 -0.48 16 3 C -0.15 -6.88 9.64 22.11 0.21 -6.67 16 4 C -0.15 -7.62 8.71 22.66 0.20 -7.43 16 5 C 0.05 2.84 5.54 -21.02 -0.12 2.72 16 6 C -0.46 -23.83 6.73 23.35 0.16 -23.67 16 7 H 0.08 4.14 6.49 -2.91 -0.02 4.12 16 8 C 0.04 1.89 5.26 85.29 0.45 2.34 16 9 N -0.82 -40.88 10.91 21.85 0.24 -40.64 16 10 Si 0.97 37.13 29.58 68.60 2.03 39.15 16 11 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 12 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 13 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 14 C 0.00 0.13 6.42 42.43 0.27 0.40 16 15 C -0.01 -0.35 5.25 -20.03 -0.11 -0.46 16 16 C -0.10 -4.30 7.49 22.53 0.17 -4.13 16 17 C -0.12 -4.26 5.89 -19.80 -0.12 -4.37 16 18 C -0.10 -2.90 9.78 71.23 0.70 -2.20 16 19 C 0.09 2.90 6.66 22.63 0.15 3.05 16 20 O -0.49 -12.29 11.56 -91.06 -1.05 -13.34 16 21 C -0.12 -3.93 5.89 -19.80 -0.12 -4.05 16 22 C -0.10 -2.48 9.78 71.24 0.70 -1.78 16 23 C -0.11 -4.52 9.30 22.52 0.21 -4.31 16 24 N -0.47 -23.36 10.06 -171.18 -1.72 -25.08 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 28 H 0.13 4.98 8.06 -2.91 -0.02 4.96 16 29 H 0.12 6.20 6.34 -2.91 -0.02 6.18 16 30 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 31 H 0.11 5.35 6.77 -2.91 -0.02 5.33 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 34 H 0.08 2.06 7.52 -2.39 -0.02 2.04 16 35 H 0.40 6.06 9.06 -74.06 -0.67 5.39 16 36 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.08 1.80 7.52 -2.39 -0.02 1.78 16 38 H 0.07 1.61 8.08 -2.38 -0.02 1.59 16 39 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -62.98 327.63 3.67 -59.31 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.41 Total: 33.28 kcal Atomic # 6 Polarization: -56.44 SS G_CDS: 3.77 Total: -52.67 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -1.48 Total: -65.73 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.05 Total: -13.34 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.15 kcal Total: -62.98 3.67 -59.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243307062.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.333 kcal (2) G-P(sol) polarization free energy of solvation -62.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds