Wall clock time and date at job start Tue Mar 31 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46638 * 2 1 4 4 C 1.50697 * 109.47305 * 119.99650 * 2 1 3 5 5 C 1.38283 * 119.55366 * 275.27978 * 4 2 1 6 6 C 1.38769 * 119.37992 * 180.22928 * 5 4 2 7 7 C 1.38406 * 118.51603 * 359.50281 * 6 5 4 8 8 C 1.39370 * 119.06601 * 0.25029 * 7 6 5 9 9 C 1.48207 * 119.72984 * 179.97438 * 8 7 6 10 10 C 1.39330 * 120.16764 * 46.83694 * 9 8 7 11 11 C 1.37984 * 119.94559 * 179.69526 * 10 9 8 12 12 C 1.38464 * 120.27668 * 0.60038 * 11 10 9 13 13 C 1.38091 * 120.33066 * 359.67576 * 12 11 10 14 14 C 1.38772 * 120.05549 * 0.02562 * 13 12 11 15 15 O 1.35637 * 120.14439 * 180.02562 * 14 13 12 16 16 C 1.34820 * 116.99831 * 5.64919 * 15 14 13 17 17 H 1.08004 * 119.99954 * 4.82880 * 16 15 14 18 18 C 1.38656 * 120.00202 * 184.83093 * 16 15 14 19 19 N 1.31552 * 119.99972 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00187 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47223 * 59.99828 * 20 18 16 22 22 H 1.48498 * 109.47012 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46807 * 299.99629 * 20 18 16 24 24 N 1.31739 * 119.55266 * 95.00097 * 4 2 1 25 25 H 1.09001 * 109.47210 * 299.99623 * 1 2 3 26 26 H 1.08995 * 109.47062 * 60.00267 * 1 2 3 27 27 H 1.09006 * 109.46748 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47704 * 240.00269 * 2 1 3 29 29 H 1.09004 * 109.46994 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47176 * 299.99663 * 3 2 1 31 31 H 1.08998 * 109.47500 * 60.00137 * 3 2 1 32 32 H 1.08002 * 120.31047 * 359.97438 * 5 4 2 33 33 H 1.08006 * 120.73926 * 179.77150 * 6 5 4 34 34 H 1.07997 * 120.46211 * 180.27330 * 7 6 5 35 35 H 1.08007 * 120.02793 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.86563 * 180.29652 * 11 10 9 37 37 H 1.08000 * 119.83833 * 179.69616 * 12 11 10 38 38 H 1.08006 * 119.97035 * 180.02562 * 13 12 11 39 39 H 0.96995 * 120.00484 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.1554 -0.0129 2.4182 6 6 2.6229 -0.6693 3.5479 7 6 2.9421 -2.0123 3.4470 8 6 2.7889 -2.6544 2.2196 9 6 3.1269 -4.0920 2.0949 10 6 2.6730 -5.0030 3.0463 11 6 2.9851 -6.3414 2.9223 12 6 3.7588 -6.7825 1.8621 13 6 4.2194 -5.8886 0.9156 14 6 3.9086 -4.5405 1.0235 15 8 4.3597 -3.6610 0.0946 16 6 5.0058 -4.1745 -0.9714 17 1 5.0760 -5.2450 -1.0962 18 6 5.5803 -3.3282 -1.9076 19 7 5.4944 -2.0243 -1.7558 20 14 6.4762 -4.0396 -3.3843 21 1 5.5371 -4.8702 -4.1801 22 1 6.9962 -2.9336 -4.2277 23 1 7.6081 -4.8806 -2.9185 24 7 2.3431 -1.9887 1.1614 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4427 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.8940 1.0340 2.4652 33 1 2.7310 -0.1450 4.4859 34 1 3.3045 -2.5550 4.3075 35 1 2.0736 -4.6627 3.8778 36 1 2.6286 -7.0472 3.6580 37 1 4.0029 -7.8309 1.7746 38 1 4.8221 -6.2391 0.0907 39 1 5.8966 -1.4323 -2.4105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:01 Heat of formation + Delta-G solvation = 22.484113 kcal Electronic energy + Delta-G solvation = -21825.862202 eV Core-core repulsion = 18698.760234 eV Total energy + Delta-G solvation = -3127.101968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.90489 -38.71585 -36.36579 -35.16259 -32.35988 -32.01003 -31.10124 -29.01991 -28.15865 -26.87041 -25.33182 -23.65141 -23.14518 -21.56636 -20.81832 -19.59193 -17.92985 -17.07899 -16.22656 -15.73292 -15.16099 -14.63916 -14.54867 -14.17057 -13.88933 -13.66714 -13.59487 -13.30265 -13.13898 -12.60923 -12.47304 -12.29932 -12.01957 -11.66685 -11.60263 -11.32072 -11.08241 -10.88784 -10.83219 -10.72916 -10.56139 -10.49445 -10.44319 -9.39714 -9.27437 -8.83241 -8.72158 -8.50856 -7.85701 -7.11631 -6.41981 -3.98542 1.46459 1.88001 2.31852 2.43041 3.14009 3.15345 3.17251 3.97566 4.32811 4.59843 4.74223 5.08022 5.13572 5.21816 5.24847 5.41641 5.46441 5.60741 5.62752 5.67562 5.72058 5.79830 5.84509 5.99045 6.04481 6.11502 6.17970 6.27405 6.28597 6.35766 6.50571 6.58335 6.64139 6.69424 6.78677 6.85405 7.09822 7.13663 7.33439 7.36644 7.43150 7.80549 8.00104 8.80299 9.01842 9.74411 10.74174 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.011071 B = 0.007702 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.511594 B = 3634.676058 C = 5599.398966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 C -0.142 4.142 4 C 0.148 3.852 5 C -0.192 4.192 6 C -0.079 4.079 7 C -0.181 4.181 8 C 0.209 3.791 9 C -0.138 4.138 10 C -0.051 4.051 11 C -0.222 4.222 12 C -0.063 4.063 13 C -0.238 4.238 14 C 0.179 3.821 15 O -0.146 6.146 16 C -0.393 4.393 17 H 0.090 0.910 18 C 0.044 3.956 19 N -0.849 5.849 20 Si 0.938 3.062 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 N -0.445 5.445 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.129 0.871 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.217 2.353 6.750 9.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.067 4.067 3 C -0.199 4.199 4 C 0.009 3.991 5 C -0.212 4.212 6 C -0.105 4.105 7 C -0.201 4.201 8 C 0.072 3.928 9 C -0.140 4.140 10 C -0.070 4.070 11 C -0.241 4.241 12 C -0.082 4.082 13 C -0.257 4.257 14 C 0.122 3.878 15 O -0.046 6.046 16 C -0.470 4.470 17 H 0.108 0.892 18 C -0.162 4.162 19 N -0.482 5.482 20 Si 0.762 3.238 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.196 1.196 24 N -0.153 5.153 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.229 2.417 5.780 8.835 hybrid contribution 0.743 -0.039 0.105 0.752 sum -5.485 2.378 5.885 8.389 Atomic orbital electron populations 1.21767 0.94382 1.02014 1.01258 1.20011 0.95315 0.95231 0.96171 1.21863 1.01820 0.95010 1.01235 1.21104 0.93975 0.89998 0.94032 1.21846 1.04524 1.00955 0.93907 1.21330 0.96643 0.94265 0.98270 1.21993 1.03969 0.95343 0.98815 1.19629 0.92130 0.92953 0.88079 1.17540 1.07235 0.90671 0.98535 1.20631 0.97468 0.92619 0.96321 1.20454 1.07138 0.95124 1.01360 1.20825 0.95547 0.98189 0.93630 1.21131 1.08258 0.93189 1.03145 1.19284 0.91218 0.89051 0.88225 1.84060 1.61627 1.31700 1.27239 1.21320 1.33866 0.93192 0.98589 0.89246 1.25252 0.97068 0.95129 0.98730 1.70059 1.40982 1.02001 1.35183 0.85839 0.79462 0.78439 0.80044 1.19472 1.20299 1.19561 1.67709 1.09369 1.08091 1.30147 0.93046 0.92363 0.92444 0.88602 0.92097 0.92390 0.92798 0.85592 0.85662 0.85492 0.86947 0.87396 0.87410 0.85356 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.17 37.16 0.34 -1.57 16 2 C -0.05 -0.82 3.23 -91.77 -0.30 -1.12 16 3 C -0.14 -2.01 8.62 37.16 0.32 -1.69 16 4 C 0.15 2.90 5.79 -82.62 -0.48 2.42 16 5 C -0.19 -3.17 9.18 -39.37 -0.36 -3.53 16 6 C -0.08 -1.25 10.16 -39.32 -0.40 -1.65 16 7 C -0.18 -3.26 9.46 -39.10 -0.37 -3.63 16 8 C 0.21 4.56 6.08 -82.96 -0.50 4.06 16 9 C -0.14 -3.07 5.63 -104.73 -0.59 -3.66 16 10 C -0.05 -0.95 9.42 -39.27 -0.37 -1.32 16 11 C -0.22 -3.88 10.03 -39.59 -0.40 -4.28 16 12 C -0.06 -1.18 10.03 -39.55 -0.40 -1.57 16 13 C -0.24 -5.28 9.13 -39.44 -0.36 -5.64 16 14 C 0.18 4.48 6.62 -38.72 -0.26 4.23 16 15 O -0.15 -4.21 8.65 0.43 0.00 -4.20 16 16 C -0.39 -11.08 9.45 30.89 0.29 -10.79 16 17 H 0.09 2.33 5.28 -52.48 -0.28 2.05 16 18 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16 19 N -0.85 -24.79 13.67 55.48 0.76 -24.03 16 20 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 24 N -0.45 -10.32 9.47 -6.06 -0.06 -10.38 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.10 1.94 8.14 -51.93 -0.42 1.51 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.65 6.49 -51.93 -0.34 0.31 16 32 H 0.13 1.68 6.31 -52.49 -0.33 1.35 16 33 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.13 1.97 7.97 -52.49 -0.42 1.55 16 35 H 0.11 1.76 7.97 -52.48 -0.42 1.34 16 36 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.13 2.82 5.71 -52.48 -0.30 2.52 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -31.92 331.22 -8.27 -40.19 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.02 Total: 6.46 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -3.92 Total: -28.65 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.70 Total: -34.41 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: 0.00 Total: -4.20 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.92 -8.27 -40.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.679 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds