Wall clock time and date at job start Tue Mar 31 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47119 * 2 1 4 4 C 1.50697 * 109.47535 * 119.99861 * 2 1 3 5 5 C 1.38286 * 119.55243 * 275.25948 * 4 2 1 6 6 C 1.38762 * 119.37671 * 180.27270 * 5 4 2 7 7 C 1.38414 * 118.51731 * 359.47463 * 6 5 4 8 8 C 1.39359 * 119.06373 * 0.25554 * 7 6 5 9 9 C 1.48256 * 119.73024 * 179.97438 * 8 7 6 10 10 C 1.39467 * 120.05379 * 184.72766 * 9 8 7 11 11 C 1.37816 * 119.94595 * 179.76274 * 10 9 8 12 12 C 1.39015 * 120.05174 * 0.48705 * 11 10 9 13 13 O 1.35679 * 119.94181 * 179.74820 * 12 11 10 14 14 C 1.34820 * 116.99632 * 174.47367 * 13 12 11 15 15 H 1.07997 * 120.00182 * 5.05270 * 14 13 12 16 16 C 1.38655 * 119.99643 * 185.05483 * 14 13 12 17 17 N 1.31554 * 120.00517 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99978 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46922 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47060 * 119.99648 * 18 16 14 21 21 H 1.48497 * 109.47050 * 239.99933 * 18 16 14 22 22 C 1.39010 * 120.11141 * 359.76290 * 12 11 10 23 23 C 1.37820 * 120.05187 * 0.02562 * 22 12 11 24 24 N 1.31738 * 119.55495 * 94.99701 * 4 2 1 25 25 H 1.09006 * 109.47241 * 299.99862 * 1 2 3 26 26 H 1.09004 * 109.47122 * 60.00104 * 1 2 3 27 27 H 1.09003 * 109.46732 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47469 * 240.00139 * 2 1 3 29 29 H 1.08999 * 109.47343 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46739 * 300.00405 * 3 2 1 31 31 H 1.08997 * 109.46836 * 59.99752 * 3 2 1 32 32 H 1.08001 * 120.31381 * 0.02578 * 5 4 2 33 33 H 1.07999 * 120.74607 * 179.75564 * 6 5 4 34 34 H 1.07997 * 120.47134 * 180.22935 * 7 6 5 35 35 H 1.08008 * 120.02463 * 359.96960 * 10 9 8 36 36 H 1.08004 * 119.97157 * 180.20851 * 11 10 9 37 37 H 0.96991 * 120.00283 * 180.02562 * 17 16 14 38 38 H 1.07996 * 119.97659 * 179.97438 * 22 12 11 39 39 H 1.08002 * 120.02523 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.1558 -0.0128 2.4181 6 6 2.6242 -0.6691 3.5474 7 6 2.9434 -2.0121 3.4465 8 6 2.7892 -2.6543 2.2194 9 6 3.1272 -4.0924 2.0945 10 6 3.0699 -4.7178 0.8492 11 6 3.3893 -6.0536 0.7349 12 6 3.7584 -6.7800 1.8612 13 8 4.0674 -8.0961 1.7469 14 6 4.5272 -8.7151 2.8529 15 1 4.5579 -8.1866 3.7942 16 6 4.9606 -10.0303 2.7817 17 7 4.9227 -10.6743 1.6352 18 14 5.5983 -10.8878 4.3139 19 1 5.5385 -9.9525 5.4657 20 1 4.7597 -12.0796 4.5994 21 1 7.0041 -11.3127 4.0944 22 6 3.8112 -6.1602 3.1044 23 6 3.4970 -4.8236 3.2231 24 7 2.3432 -1.9887 1.1614 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.8940 1.0339 2.4652 33 1 2.7330 -0.1448 4.4853 34 1 3.3071 -2.5547 4.3066 35 1 2.7788 -4.1549 -0.0254 36 1 3.3483 -6.5375 -0.2298 37 1 5.2255 -11.5944 1.5855 38 1 4.0979 -6.7267 3.9780 39 1 3.5377 -4.3426 4.1892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:04 Heat of formation + Delta-G solvation = 18.080016 kcal Electronic energy + Delta-G solvation = -20643.813338 eV Core-core repulsion = 17516.520394 eV Total energy + Delta-G solvation = -3127.292944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28256 -38.94573 -36.73648 -35.39402 -32.56294 -32.30625 -30.95648 -30.09311 -27.97331 -27.26070 -25.49925 -24.11973 -23.20882 -21.86226 -21.03493 -19.80907 -18.07143 -17.34919 -16.64462 -16.00858 -15.53477 -14.74972 -14.56009 -14.31888 -14.28966 -13.98698 -13.70554 -13.57301 -13.28024 -12.93015 -12.80459 -12.54860 -12.32597 -11.94731 -11.77837 -11.51260 -11.47422 -11.28124 -11.04574 -10.96142 -10.87416 -10.68807 -10.48134 -9.71229 -9.45045 -9.14199 -9.11713 -8.68418 -8.25618 -7.07539 -6.56155 -4.12523 1.02044 1.43213 2.22068 2.43582 3.07402 3.08717 3.14424 3.88404 3.97590 4.17975 4.63791 4.64774 4.87921 4.97818 5.01200 5.03738 5.17535 5.18756 5.24331 5.29376 5.44108 5.55304 5.64095 5.66295 5.74549 5.81751 5.83227 5.93883 6.02581 6.10765 6.15318 6.23997 6.32468 6.44824 6.65330 6.78152 6.85265 7.03771 7.22853 7.28758 7.35455 7.73452 7.89246 8.28188 8.88965 9.57383 10.61103 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.037686 B = 0.003091 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.802506 B = 9055.828251 C = 9632.780525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.047 4.047 3 C -0.145 4.145 4 C 0.144 3.856 5 C -0.201 4.201 6 C -0.068 4.068 7 C -0.190 4.190 8 C 0.214 3.786 9 C -0.166 4.166 10 C -0.027 4.027 11 C -0.201 4.201 12 C 0.167 3.833 13 O -0.168 6.168 14 C -0.392 4.392 15 H 0.096 0.904 16 C 0.040 3.960 17 N -0.856 5.856 18 Si 0.943 3.057 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.240 4.240 23 C -0.044 4.044 24 N -0.490 5.490 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.272 0.728 38 H 0.131 0.869 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.090 19.484 1.694 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 C -0.203 4.203 4 C 0.005 3.995 5 C -0.221 4.221 6 C -0.094 4.094 7 C -0.210 4.210 8 C 0.079 3.921 9 C -0.168 4.168 10 C -0.046 4.046 11 C -0.221 4.221 12 C 0.111 3.889 13 O -0.069 6.069 14 C -0.468 4.468 15 H 0.113 0.887 16 C -0.165 4.165 17 N -0.490 5.490 18 Si 0.768 3.232 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.259 4.259 23 C -0.063 4.063 24 N -0.200 5.200 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.149 0.851 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.125 18.618 0.629 19.320 hybrid contribution 0.453 -0.004 1.746 1.804 sum -4.672 18.614 2.375 19.338 Atomic orbital electron populations 1.21785 0.93817 1.02412 1.01737 1.20025 0.96053 0.95181 0.95356 1.21905 1.01325 0.95058 1.01990 1.21087 0.94185 0.89810 0.94411 1.21798 1.05297 1.01232 0.93794 1.21421 0.95375 0.94247 0.98340 1.22046 1.04443 0.95362 0.99110 1.19842 0.90893 0.93242 0.88108 1.17957 1.14016 0.90178 0.94628 1.20780 0.94335 0.92964 0.96516 1.20214 1.10560 0.93955 0.97344 1.19541 0.91429 0.84830 0.93116 1.83955 1.69564 1.16265 1.37164 1.21465 1.42251 0.95764 0.87317 0.88676 1.25355 0.96566 0.95768 0.98830 1.70043 1.42838 1.11539 1.24539 0.85607 0.78644 0.79294 0.79677 1.18961 1.20015 1.20009 1.21055 1.11385 0.95307 0.98170 1.20791 0.95438 0.93421 0.96643 1.67484 1.12745 1.08217 1.31530 0.92693 0.92099 0.92184 0.89327 0.92432 0.92062 0.92281 0.85409 0.85384 0.84952 0.85736 0.86142 0.91815 0.85129 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.18 37.16 0.34 -0.96 16 2 C -0.05 -0.49 3.23 -91.77 -0.30 -0.79 16 3 C -0.15 -1.17 8.62 37.16 0.32 -0.85 16 4 C 0.14 1.94 5.79 -82.62 -0.48 1.46 16 5 C -0.20 -2.36 9.17 -39.37 -0.36 -2.72 16 6 C -0.07 -0.81 10.16 -39.32 -0.40 -1.21 16 7 C -0.19 -2.69 9.45 -39.10 -0.37 -3.06 16 8 C 0.21 3.61 6.72 -82.95 -0.56 3.06 16 9 C -0.17 -3.11 5.88 -104.86 -0.62 -3.73 16 10 C -0.03 -0.52 9.56 -39.28 -0.38 -0.90 16 11 C -0.20 -4.34 9.98 -39.45 -0.39 -4.73 16 12 C 0.17 3.99 6.65 -39.01 -0.26 3.73 16 13 O -0.17 -4.70 9.75 0.30 0.00 -4.70 16 14 C -0.39 -10.69 9.48 30.89 0.29 -10.40 16 15 H 0.10 2.39 5.19 -52.49 -0.27 2.11 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -24.58 13.67 55.48 0.76 -23.82 16 18 Si 0.94 19.98 29.55 -169.99 -5.02 14.95 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 C -0.24 -5.13 9.15 -39.45 -0.36 -5.49 16 23 C -0.04 -0.81 9.40 -39.28 -0.37 -1.18 16 24 N -0.49 -8.06 9.35 -6.05 -0.06 -8.11 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 6.49 -51.93 -0.34 0.08 16 32 H 0.13 1.15 6.31 -52.49 -0.33 0.82 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.13 1.66 6.22 -52.49 -0.33 1.33 16 35 H 0.12 2.24 7.54 -52.48 -0.40 1.84 16 36 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 37 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.13 2.74 5.62 -52.49 -0.30 2.45 16 39 H 0.11 1.71 6.20 -52.49 -0.33 1.38 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -30.44 328.41 -8.15 -38.59 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.80 Total: 4.92 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -3.98 Total: -26.78 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.70 Total: -31.93 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: 0.00 Total: -4.70 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.44 -8.15 -38.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.672 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds