Wall clock time and date at job start Tue Mar 31 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39694 * 119.99825 * 2 1 4 4 C 1.39019 * 120.01428 * 0.03050 * 3 2 1 5 5 C 1.38175 * 120.17545 * 179.72252 * 4 3 2 6 6 C 1.38068 * 120.20946 * 0.50516 * 5 4 3 7 7 C 1.39411 * 120.02030 * 359.49279 * 6 5 4 8 8 C 1.48291 * 120.09197 * 180.27806 * 7 6 5 9 9 C 1.39285 * 120.16213 * 64.72132 * 8 7 6 10 10 C 1.38017 * 119.94916 * 179.72098 * 9 8 7 11 11 C 1.38447 * 120.26494 * 0.56318 * 10 9 8 12 12 C 1.38103 * 120.32474 * 359.71490 * 11 10 9 13 13 C 1.38761 * 120.05187 * 0.02562 * 12 11 10 14 14 O 1.35666 * 120.13743 * 179.97438 * 13 12 11 15 15 C 1.34816 * 116.99760 * 354.40044 * 14 13 12 16 16 H 1.07997 * 120.00095 * 5.06206 * 15 14 13 17 17 C 1.38652 * 119.99816 * 185.06386 * 15 14 13 18 18 N 1.31552 * 120.00065 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99855 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47236 * 59.99975 * 19 17 15 21 21 H 1.48501 * 109.46706 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46943 * 299.99471 * 19 17 15 23 23 C 1.38670 * 120.01015 * 179.97438 * 3 2 1 24 24 C 1.50707 * 120.10278 * 0.05092 * 23 3 2 25 25 H 1.09003 * 109.47433 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47236 * 299.99774 * 1 2 3 27 27 H 1.08998 * 109.47157 * 59.99447 * 1 2 3 28 28 H 0.97001 * 120.00242 * 180.02562 * 2 1 3 29 29 H 1.08002 * 119.90546 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.89326 * 180.27693 * 5 4 3 31 31 H 1.08004 * 119.98938 * 179.76750 * 6 5 4 32 32 H 1.08003 * 120.02434 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.86375 * 180.29980 * 10 9 8 34 34 H 1.07999 * 119.83462 * 179.73829 * 11 10 9 35 35 H 1.08007 * 119.97563 * 180.02562 * 12 11 10 36 36 H 0.97000 * 120.00421 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.47118 * 269.97845 * 24 23 3 38 38 H 1.09004 * 109.46805 * 29.97370 * 24 23 3 39 39 H 1.08995 * 109.47397 * 149.97144 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2098 0.0000 4 6 1.4686 2.4139 0.0006 5 6 2.1561 3.6125 0.0064 6 6 3.5367 3.6215 0.0011 7 6 4.2420 2.4190 0.0005 8 6 5.7249 2.4268 0.0010 9 6 6.4217 2.9440 1.0905 10 6 7.8019 2.9439 1.0888 11 6 8.4982 2.4419 0.0026 12 6 7.8187 1.9316 -1.0860 13 6 6.4312 1.9203 -1.0961 14 8 5.7618 1.4200 -2.1648 15 6 6.4993 1.0558 -3.2331 16 1 7.5775 1.0913 -3.1824 17 6 5.8734 0.6359 -4.3968 18 7 4.5600 0.5923 -4.4585 19 14 6.8952 0.1306 -5.8768 20 1 7.7700 -1.0112 -5.5078 21 1 5.9940 -0.2749 -6.9852 22 1 7.7336 1.2758 -6.3136 23 6 3.5501 1.2101 0.0005 24 6 4.3063 -0.0936 0.0000 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.9500 -0.8400 -0.0004 29 1 0.3886 2.4123 0.0007 30 1 1.6116 4.5452 0.0114 31 1 4.0704 4.5604 0.0018 32 1 5.8823 3.3404 1.9381 33 1 8.3407 3.3408 1.9364 34 1 9.5782 2.4490 0.0069 35 1 8.3676 1.5411 -1.9302 36 1 4.1221 0.2981 -5.2725 37 1 4.4885 -0.4083 1.0274 38 1 3.7186 -0.8541 -0.5142 39 1 5.2584 0.0388 -0.5138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:17 Heat of formation + Delta-G solvation = 26.142939 kcal Electronic energy + Delta-G solvation = -22068.080137 eV Core-core repulsion = 18941.136828 eV Total energy + Delta-G solvation = -3126.943309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.60616 -38.43035 -36.33532 -35.00548 -32.54893 -32.13153 -30.65266 -28.97312 -27.89645 -26.36613 -25.40308 -25.26432 -22.35888 -21.37303 -20.56398 -19.81318 -17.91153 -17.19842 -16.60946 -15.72625 -14.86182 -14.63453 -14.56123 -14.29360 -13.99879 -13.89601 -13.59158 -13.18546 -13.04149 -12.76079 -12.49830 -12.40573 -11.98949 -11.68365 -11.49582 -11.33434 -11.28073 -10.98382 -10.84607 -10.72811 -10.50585 -10.44374 -10.21676 -9.57535 -9.30090 -8.81334 -8.26653 -7.73965 -7.11524 -6.81358 -6.41469 -4.00514 1.87257 2.24132 2.36885 2.44259 3.13273 3.14937 3.16928 3.89994 3.97285 4.46096 4.62549 5.09651 5.27094 5.29802 5.41542 5.51990 5.62767 5.66611 5.70689 5.82827 5.84109 5.88606 6.09121 6.09245 6.29414 6.29578 6.34864 6.39940 6.52373 6.72668 6.82584 6.95192 7.01213 7.09645 7.16436 7.20877 7.36523 7.38930 7.43111 7.57015 7.84731 7.89399 8.01045 8.14514 9.02701 9.73310 10.74576 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.007436 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.352535 B = 3764.311594 C = 5375.109646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.756 5.756 3 C 0.210 3.790 4 C -0.202 4.202 5 C -0.087 4.087 6 C -0.163 4.163 7 C 0.032 3.968 8 C -0.129 4.129 9 C -0.061 4.061 10 C -0.216 4.216 11 C -0.072 4.072 12 C -0.237 4.237 13 C 0.164 3.836 14 O -0.159 6.159 15 C -0.396 4.396 16 H 0.090 0.910 17 C 0.044 3.956 18 N -0.852 5.852 19 Si 0.936 3.064 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.270 1.270 23 C -0.122 4.122 24 C -0.102 4.102 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.398 0.602 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.269 0.731 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 0.484 8.510 9.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.388 5.388 3 C 0.109 3.891 4 C -0.225 4.225 5 C -0.106 4.106 6 C -0.182 4.182 7 C 0.031 3.969 8 C -0.130 4.130 9 C -0.079 4.079 10 C -0.235 4.235 11 C -0.090 4.090 12 C -0.256 4.256 13 C 0.110 3.890 14 O -0.061 6.061 15 C -0.473 4.473 16 H 0.107 0.893 17 C -0.162 4.162 18 N -0.486 5.486 19 Si 0.761 3.239 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.195 1.195 23 C -0.126 4.126 24 C -0.159 4.159 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.234 0.766 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.931 0.391 8.268 9.163 hybrid contribution 0.729 -0.517 -0.961 1.312 sum -3.201 -0.125 7.308 7.979 Atomic orbital electron populations 1.21405 0.81116 1.01523 1.00565 1.44400 1.05005 1.05639 1.83786 1.17469 0.90461 0.86024 0.95160 1.20432 0.98662 0.91293 1.12114 1.20609 0.93978 0.96694 0.99297 1.20877 0.93654 0.96971 1.06740 1.18197 0.91309 0.91860 0.95516 1.17845 0.91265 1.08561 0.95340 1.20682 0.93722 0.97402 0.96096 1.20505 0.93861 1.09401 0.99715 1.20785 0.98452 0.96586 0.93210 1.21110 0.93984 1.09611 1.00923 1.19291 0.90275 0.90925 0.88542 1.84046 1.34448 1.67463 1.20165 1.21277 0.91021 1.45306 0.89667 0.89272 1.25233 0.96052 0.96913 0.97973 1.70056 1.07631 1.42907 1.28034 0.85864 0.78948 0.79200 0.79921 1.19578 1.20361 1.19540 1.19325 0.90922 0.95427 1.06898 1.20605 1.01568 0.93643 1.00093 0.91547 0.93581 0.93390 0.76628 0.87085 0.86969 0.86950 0.86976 0.87605 0.87603 0.85504 0.92123 0.93077 0.92975 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.19 9.94 59.85 0.59 1.79 16 2 N -0.76 -11.92 5.79 -65.43 -0.38 -12.30 16 3 C 0.21 3.96 6.63 -83.83 -0.56 3.41 16 4 C -0.20 -3.55 9.31 -39.32 -0.37 -3.92 16 5 C -0.09 -1.52 10.02 -39.67 -0.40 -1.92 16 6 C -0.16 -3.15 9.73 -39.21 -0.38 -3.53 16 7 C 0.03 0.68 4.94 -104.93 -0.52 0.16 16 8 C -0.13 -2.78 4.63 -104.73 -0.48 -3.27 16 9 C -0.06 -1.14 9.73 -39.27 -0.38 -1.52 16 10 C -0.22 -3.80 10.03 -39.59 -0.40 -4.19 16 11 C -0.07 -1.33 10.03 -39.55 -0.40 -1.73 16 12 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 13 C 0.16 3.94 5.25 -38.74 -0.20 3.74 16 14 O -0.16 -4.38 7.70 0.35 0.00 -4.38 16 15 C -0.40 -10.89 9.49 30.89 0.29 -10.59 16 16 H 0.09 2.28 5.21 -52.49 -0.27 2.00 16 17 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 18 N -0.85 -24.71 13.67 55.48 0.76 -23.96 16 19 Si 0.94 20.46 29.55 -169.99 -5.02 15.43 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 23 C -0.12 -2.53 5.71 -104.07 -0.59 -3.13 16 24 C -0.10 -2.06 9.01 36.01 0.32 -1.73 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.51 7.94 -51.93 -0.41 0.09 16 27 H 0.05 0.60 7.95 -51.93 -0.41 0.18 16 28 H 0.40 5.97 6.82 -40.82 -0.28 5.69 16 29 H 0.11 1.66 6.72 -52.49 -0.35 1.31 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.11 2.01 8.06 -52.48 -0.42 1.59 16 32 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.99 6.55 -51.93 -0.34 0.65 16 39 H 0.08 1.94 4.68 -51.93 -0.24 1.69 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -30.87 323.50 -8.39 -39.26 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -4.70 Total: 11.92 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: -3.92 Total: -30.85 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.38 Total: -36.26 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: 0.00 Total: -4.38 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.87 -8.39 -39.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.406 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds