Wall clock time and date at job start Tue Mar 31 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39694 * 119.99825 * 2 1 4 4 C 1.39019 * 120.01428 * 0.03050 * 3 2 1 5 5 C 1.38175 * 120.17545 * 179.72252 * 4 3 2 6 6 C 1.38068 * 120.20946 * 0.50516 * 5 4 3 7 7 C 1.39411 * 120.02030 * 359.49279 * 6 5 4 8 8 C 1.48291 * 120.09197 * 180.27806 * 7 6 5 9 9 C 1.39285 * 120.16213 * 64.72132 * 8 7 6 10 10 C 1.38017 * 119.94916 * 179.72098 * 9 8 7 11 11 C 1.38447 * 120.26494 * 0.56318 * 10 9 8 12 12 C 1.38103 * 120.32474 * 359.71490 * 11 10 9 13 13 C 1.38761 * 120.05187 * 0.02562 * 12 11 10 14 14 O 1.35666 * 120.13743 * 179.97438 * 13 12 11 15 15 C 1.34816 * 116.99760 * 354.40044 * 14 13 12 16 16 H 1.07997 * 120.00095 * 5.06206 * 15 14 13 17 17 C 1.38652 * 119.99816 * 185.06386 * 15 14 13 18 18 N 1.31552 * 120.00065 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99855 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47236 * 59.99975 * 19 17 15 21 21 H 1.48501 * 109.46706 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46943 * 299.99471 * 19 17 15 23 23 C 1.38670 * 120.01015 * 179.97438 * 3 2 1 24 24 C 1.50707 * 120.10278 * 0.05092 * 23 3 2 25 25 H 1.09003 * 109.47433 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47236 * 299.99774 * 1 2 3 27 27 H 1.08998 * 109.47157 * 59.99447 * 1 2 3 28 28 H 0.97001 * 120.00242 * 180.02562 * 2 1 3 29 29 H 1.08002 * 119.90546 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.89326 * 180.27693 * 5 4 3 31 31 H 1.08004 * 119.98938 * 179.76750 * 6 5 4 32 32 H 1.08003 * 120.02434 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.86375 * 180.29980 * 10 9 8 34 34 H 1.07999 * 119.83462 * 179.73829 * 11 10 9 35 35 H 1.08007 * 119.97563 * 180.02562 * 12 11 10 36 36 H 0.97000 * 120.00421 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.47118 * 269.97845 * 24 23 3 38 38 H 1.09004 * 109.46805 * 29.97370 * 24 23 3 39 39 H 1.08995 * 109.47397 * 149.97144 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2098 0.0000 4 6 1.4686 2.4139 0.0006 5 6 2.1561 3.6125 0.0064 6 6 3.5367 3.6215 0.0011 7 6 4.2420 2.4190 0.0005 8 6 5.7249 2.4268 0.0010 9 6 6.4217 2.9440 1.0905 10 6 7.8019 2.9439 1.0888 11 6 8.4982 2.4419 0.0026 12 6 7.8187 1.9316 -1.0860 13 6 6.4312 1.9203 -1.0961 14 8 5.7618 1.4200 -2.1648 15 6 6.4993 1.0558 -3.2331 16 1 7.5775 1.0913 -3.1824 17 6 5.8734 0.6359 -4.3968 18 7 4.5600 0.5923 -4.4585 19 14 6.8952 0.1306 -5.8768 20 1 7.7700 -1.0112 -5.5078 21 1 5.9940 -0.2749 -6.9852 22 1 7.7336 1.2758 -6.3136 23 6 3.5501 1.2101 0.0005 24 6 4.3063 -0.0936 0.0000 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.9500 -0.8400 -0.0004 29 1 0.3886 2.4123 0.0007 30 1 1.6116 4.5452 0.0114 31 1 4.0704 4.5604 0.0018 32 1 5.8823 3.3404 1.9381 33 1 8.3407 3.3408 1.9364 34 1 9.5782 2.4490 0.0069 35 1 8.3676 1.5411 -1.9302 36 1 4.1221 0.2981 -5.2725 37 1 4.4885 -0.4083 1.0274 38 1 3.7186 -0.8541 -0.5142 39 1 5.2584 0.0388 -0.5138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243589113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:17 Heat of formation + Delta-G solvation = 8.684329 kcal Electronic energy + Delta-G solvation = -22068.837199 eV Core-core repulsion = 18941.136828 eV Total energy + Delta-G solvation = -3127.700371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.17661 -39.96648 -38.02340 -36.31097 -34.30583 -33.81700 -32.10693 -30.56767 -29.38462 -27.83586 -27.20707 -26.60952 -23.87109 -23.03660 -21.99793 -21.30664 -19.73874 -18.78950 -18.09507 -17.17656 -16.44927 -16.27734 -16.13531 -15.84011 -15.58098 -15.24091 -15.08423 -14.65113 -14.51569 -14.32353 -14.01722 -13.85781 -13.52526 -13.26482 -12.99535 -12.83361 -12.73584 -12.52039 -12.46941 -12.30628 -12.14788 -11.95172 -11.75728 -11.07986 -10.87035 -10.74920 -9.79238 -9.28302 -8.79541 -8.40459 -8.16174 -6.06858 0.34997 0.75857 0.80469 0.91537 1.34083 1.44312 1.48698 2.18402 2.68696 2.87784 3.04432 3.23148 3.55411 3.92511 4.13833 4.24902 4.26606 4.31065 4.34961 4.41882 4.62500 4.68670 4.69549 4.72766 4.78081 4.83256 4.91911 4.95701 5.06173 5.12596 5.18387 5.29536 5.45705 5.52174 5.67968 5.70610 5.74105 5.80413 5.94826 6.03300 6.13684 6.29006 6.58281 6.85853 7.03329 7.86877 8.80134 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.007436 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.352535 B = 3764.311594 C = 5375.109646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.757 5.757 3 C 0.201 3.799 4 C -0.208 4.208 5 C -0.082 4.082 6 C -0.182 4.182 7 C 0.006 3.994 8 C -0.135 4.135 9 C -0.064 4.064 10 C -0.192 4.192 11 C -0.071 4.071 12 C -0.253 4.253 13 C 0.129 3.871 14 O -0.202 6.202 15 C -0.415 4.415 16 H 0.096 0.904 17 C -0.015 4.015 18 N -0.908 5.908 19 Si 1.008 2.992 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.261 1.261 23 C -0.154 4.154 24 C -0.092 4.092 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.399 0.601 29 H 0.139 0.861 30 H 0.147 0.853 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.268 0.732 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 1.344 10.179 10.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.389 5.389 3 C 0.098 3.902 4 C -0.230 4.230 5 C -0.101 4.101 6 C -0.202 4.202 7 C 0.005 3.995 8 C -0.136 4.136 9 C -0.082 4.082 10 C -0.211 4.211 11 C -0.089 4.089 12 C -0.272 4.272 13 C 0.078 3.922 14 O -0.107 6.107 15 C -0.492 4.492 16 H 0.114 0.886 17 C -0.214 4.214 18 N -0.545 5.545 19 Si 0.829 3.171 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.185 1.185 23 C -0.158 4.158 24 C -0.149 4.149 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.234 0.766 29 H 0.157 0.843 30 H 0.165 0.835 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.161 0.839 35 H 0.136 0.864 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.541 1.256 9.989 10.672 hybrid contribution 0.643 -0.680 -1.178 1.505 sum -2.898 0.576 8.811 9.293 Atomic orbital electron populations 1.21645 0.78743 1.03602 1.01020 1.44610 1.06585 1.04760 1.82899 1.17717 0.90149 0.87709 0.94604 1.20810 1.00118 0.90803 1.11305 1.21018 0.93412 0.98223 0.97410 1.21077 0.94790 0.96624 1.07732 1.18452 0.91470 0.92877 0.96723 1.18217 0.92030 1.08020 0.95359 1.21093 0.94607 0.96624 0.95876 1.21061 0.93512 1.06351 1.00138 1.21191 1.00373 0.95258 0.92114 1.21268 0.93393 1.10400 1.02120 1.19809 0.91537 0.92154 0.88680 1.84032 1.35360 1.70111 1.21201 1.21728 0.91619 1.45395 0.90429 0.88637 1.26383 0.97270 0.96860 1.00856 1.70213 1.09657 1.45731 1.28906 0.84792 0.77348 0.79237 0.75763 1.18326 1.19888 1.18525 1.19506 0.92174 0.95336 1.08806 1.20461 0.99836 0.94007 1.00564 0.88856 0.92017 0.93784 0.76607 0.84315 0.83531 0.86168 0.84276 0.83215 0.83923 0.86423 0.92288 0.91306 0.93088 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.08 9.94 127.77 1.27 3.35 16 2 N -0.76 -23.53 5.79 -360.91 -2.09 -25.62 16 3 C 0.20 7.59 6.63 38.18 0.25 7.84 16 4 C -0.21 -7.02 9.31 22.44 0.21 -6.82 16 5 C -0.08 -2.75 10.02 22.21 0.22 -2.53 16 6 C -0.18 -7.04 9.73 22.51 0.22 -6.82 16 7 C 0.01 0.24 4.94 -20.07 -0.10 0.14 16 8 C -0.13 -5.92 4.63 -19.93 -0.09 -6.01 16 9 C -0.06 -2.27 9.73 22.47 0.22 -2.05 16 10 C -0.19 -6.07 10.03 22.27 0.22 -5.85 16 11 C -0.07 -2.47 10.03 22.29 0.22 -2.25 16 12 C -0.25 -11.13 9.16 22.36 0.20 -10.92 16 13 C 0.13 6.47 5.25 22.81 0.12 6.59 16 14 O -0.20 -11.85 7.70 -21.67 -0.17 -12.01 16 15 C -0.42 -24.07 9.49 67.92 0.64 -23.43 16 16 H 0.10 5.14 5.21 -2.91 -0.02 5.12 16 17 C -0.02 -0.86 5.49 84.83 0.47 -0.39 16 18 N -0.91 -55.57 13.67 21.61 0.30 -55.27 16 19 Si 1.01 43.33 29.55 68.60 2.03 45.36 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 23 C -0.15 -6.60 5.71 -19.51 -0.11 -6.71 16 24 C -0.09 -3.88 9.01 71.24 0.64 -3.24 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.19 7.94 -2.39 -0.02 1.18 16 27 H 0.04 1.02 7.95 -2.39 -0.02 1.00 16 28 H 0.40 12.03 6.82 -92.71 -0.63 11.40 16 29 H 0.14 3.81 6.72 -2.91 -0.02 3.79 16 30 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 32 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 33 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 35 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 36 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 38 H 0.05 2.06 6.55 -2.38 -0.02 2.05 16 39 H 0.05 2.46 4.68 -2.39 -0.01 2.45 16 Total: -1.00 -71.98 323.50 5.13 -66.85 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: 0.45 Total: 39.80 kcal Atomic # 6 Polarization: -63.71 SS G_CDS: 4.61 Total: -59.10 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -1.79 Total: -80.89 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.17 Total: -12.01 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -71.98 5.13 -66.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.536 kcal (2) G-P(sol) polarization free energy of solvation -71.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds