Wall clock time and date at job start Tue Mar 31 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38426 * 119.92459 * 2 1 4 4 C 1.38379 * 120.30257 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.91841 * 179.97438 * 4 3 2 6 6 O 1.42894 * 109.47088 * 90.00054 * 5 4 3 7 7 C 1.37935 * 120.15640 * 359.95130 * 4 3 2 8 8 C 1.39656 * 119.84466 * 0.06715 * 7 4 3 9 9 C 1.47823 * 120.15237 * 180.23530 * 8 7 4 10 10 N 1.32579 * 119.98986 * 315.76445 * 9 8 7 11 11 C 1.31737 * 121.72139 * 179.71107 * 10 9 8 12 12 C 1.50700 * 119.24748 * 180.29158 * 11 10 9 13 13 C 1.38873 * 121.50540 * 0.56904 * 11 10 9 14 14 C 1.36886 * 119.79692 * 359.71760 * 13 11 10 15 15 C 1.41122 * 118.39588 * 0.02562 * 14 13 11 16 16 C 1.40884 * 120.72264 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00615 * 151.37646 * 16 15 14 18 18 C 1.40077 * 119.99901 * 331.37932 * 16 15 14 19 19 N 1.30779 * 119.99840 * 348.57868 * 18 16 15 20 20 Si 1.86798 * 120.00153 * 168.57497 * 18 16 15 21 21 H 1.48503 * 109.46822 * 60.00314 * 20 18 16 22 22 H 1.48501 * 109.47188 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47356 * 300.00125 * 20 18 16 24 24 C 1.37902 * 119.92362 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47304 * 269.98568 * 1 2 3 26 26 H 1.09004 * 109.46981 * 29.98098 * 1 2 3 27 27 H 1.08997 * 109.47117 * 149.98148 * 1 2 3 28 28 H 1.08000 * 119.84733 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47033 * 209.99756 * 5 4 3 30 30 H 1.08997 * 109.47453 * 329.99735 * 5 4 3 31 31 H 0.96701 * 114.00469 * 179.97438 * 6 5 4 32 32 H 1.07994 * 120.07728 * 180.02562 * 7 4 3 33 33 H 1.09002 * 109.46873 * 270.26594 * 12 11 10 34 34 H 1.08995 * 109.47322 * 30.27300 * 12 11 10 35 35 H 1.09001 * 109.47173 * 150.27471 * 12 11 10 36 36 H 1.07992 * 120.10226 * 179.70269 * 13 11 10 37 37 H 1.08001 * 120.79892 * 179.97438 * 14 13 11 38 38 H 0.97000 * 120.00024 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.07531 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1997 0.0000 4 6 3.5813 1.2088 -0.0005 5 6 4.3243 2.5200 -0.0011 6 8 4.5597 2.9347 1.3459 7 6 4.2821 0.0208 -0.0001 8 6 3.5918 -1.1933 -0.0005 9 6 4.3360 -2.4705 0.0053 10 7 5.3838 -2.6306 -0.7910 11 6 6.0748 -3.7520 -0.8095 12 6 7.2604 -3.8711 -1.7321 13 6 5.7323 -4.8289 -0.0024 14 6 4.6575 -4.7329 0.8399 15 6 3.9250 -3.5269 0.8585 16 6 2.8100 -3.3749 1.7061 17 1 2.5402 -2.3958 2.0735 18 6 2.0512 -4.4939 2.0726 19 7 2.2326 -5.6357 1.4612 20 14 0.7803 -4.3553 3.4346 21 1 -0.2362 -3.3391 3.0615 22 1 0.1174 -5.6699 3.6286 23 1 1.4491 -3.9467 4.6959 24 6 2.1949 -1.1952 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5136 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6538 2.1329 -0.0004 29 1 5.2776 2.3972 -0.5152 30 1 3.7291 3.2748 -0.5149 31 1 5.0353 3.7732 1.4220 32 1 5.3620 0.0294 -0.0001 33 1 6.9329 -4.2606 -2.6961 34 1 7.7125 -2.8892 -1.8715 35 1 7.9934 -4.5500 -1.2961 36 1 6.3118 -5.7394 -0.0393 37 1 4.3765 -5.5606 1.4743 38 1 1.7069 -6.4105 1.7147 39 1 1.6549 -2.1304 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243699894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:42 Heat of formation + Delta-G solvation = -18.967732 kcal Electronic energy + Delta-G solvation = -21619.233442 eV Core-core repulsion = 18490.333987 eV Total energy + Delta-G solvation = -3128.899455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.24530 -38.13181 -36.40324 -34.35295 -32.73312 -32.06714 -30.85845 -29.59414 -27.80763 -26.51865 -25.42709 -24.52220 -22.56183 -20.89491 -19.89864 -19.65921 -17.41915 -17.28262 -15.78444 -15.62722 -15.25997 -14.86494 -14.39039 -14.03001 -13.74537 -13.47676 -13.25082 -13.11154 -12.70408 -12.46740 -12.01606 -11.96447 -11.82569 -11.74947 -11.54223 -11.44727 -11.23286 -10.99451 -10.97231 -10.70168 -10.50543 -10.32733 -9.93549 -9.79748 -9.41702 -8.54899 -8.09397 -8.00468 -7.95173 -7.28443 -6.88975 -4.51840 1.82909 2.02527 2.61410 2.95789 2.98043 3.01905 3.14060 3.80410 4.26427 4.50940 4.81036 5.19350 5.29408 5.32403 5.51516 5.55741 5.62287 5.75165 5.78498 6.00461 6.03027 6.09221 6.17117 6.23031 6.30032 6.37509 6.39745 6.49922 6.67172 6.76538 6.84837 6.92722 7.02095 7.06972 7.19636 7.29314 7.46729 7.62172 7.69706 7.75057 7.86387 7.91129 8.36464 8.58299 8.64978 9.56216 9.98904 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.007540 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.847587 B = 3712.499001 C = 5559.244786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.103 4.103 3 C -0.118 4.118 4 C -0.106 4.106 5 C 0.123 3.877 6 O -0.567 6.567 7 C -0.091 4.091 8 C 0.024 3.976 9 C 0.018 3.982 10 N -0.450 5.450 11 C -0.008 4.008 12 C -0.073 4.073 13 C -0.144 4.144 14 C -0.125 4.125 15 C 0.084 3.916 16 C -0.439 4.439 17 H 0.088 0.912 18 C 0.074 3.926 19 N -0.791 5.791 20 Si 0.910 3.090 21 H -0.260 1.260 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.084 4.084 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.372 0.628 32 H 0.116 0.884 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.285 0.715 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.328 8.200 -1.505 8.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.103 4.103 3 C -0.137 4.137 4 C -0.106 4.106 5 C 0.046 3.954 6 O -0.372 6.372 7 C -0.110 4.110 8 C 0.023 3.977 9 C -0.120 4.120 10 N -0.158 5.158 11 C -0.149 4.149 12 C -0.131 4.131 13 C -0.165 4.165 14 C -0.151 4.151 15 C 0.079 3.921 16 C -0.468 4.468 17 H 0.106 0.894 18 C -0.145 4.145 19 N -0.415 5.415 20 Si 0.734 3.266 21 H -0.185 1.185 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.103 4.103 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.134 0.866 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.096 0.904 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.494 8.042 -1.939 8.287 hybrid contribution -0.515 -0.412 1.025 1.218 sum -1.008 7.630 -0.914 7.751 Atomic orbital electron populations 1.20700 0.91823 1.01969 1.01852 1.19707 0.95547 0.93027 1.02026 1.20684 0.93123 0.96921 1.02933 1.19315 0.93528 0.93490 1.04246 1.20942 0.97825 0.93343 0.83259 1.86637 1.80161 1.43388 1.26968 1.21070 0.99411 0.90961 0.99592 1.18385 0.92141 0.91236 0.95934 1.19455 0.97839 0.94956 0.99784 1.66834 1.05323 1.23938 1.19732 1.20267 1.00307 0.91212 1.03148 1.20282 0.94643 1.00907 0.97292 1.21260 0.98609 0.97887 0.98696 1.21433 0.94011 0.99451 1.00170 1.18332 0.92157 0.91013 0.90573 1.19586 1.08544 0.95054 1.23629 0.89382 1.25991 0.98113 0.94448 0.95968 1.69736 1.35508 1.01590 1.34696 0.86305 0.80314 0.78625 0.81388 1.18480 1.20152 1.18587 1.21390 0.93629 0.97715 0.97573 0.91700 0.92330 0.91747 0.87238 0.93132 0.93409 0.78183 0.86601 0.93179 0.92624 0.92901 0.88322 0.85413 0.90403 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.01 36.00 0.36 -1.21 16 2 C -0.10 -1.88 5.87 -104.68 -0.61 -2.50 16 3 C -0.12 -2.05 9.35 -39.46 -0.37 -2.42 16 4 C -0.11 -1.91 5.50 -104.68 -0.58 -2.49 16 5 C 0.12 1.75 7.17 36.01 0.26 2.01 16 6 O -0.57 -8.15 13.64 -35.23 -0.48 -8.63 16 7 C -0.09 -1.91 9.32 -39.16 -0.36 -2.27 16 8 C 0.02 0.55 5.26 -104.90 -0.55 0.00 16 9 C 0.02 0.45 6.43 -82.24 -0.53 -0.08 16 10 N -0.45 -11.16 10.06 -5.44 -0.05 -11.22 16 11 C -0.01 -0.18 6.79 -82.40 -0.56 -0.73 16 12 C -0.07 -1.34 10.15 36.01 0.37 -0.97 16 13 C -0.14 -3.33 9.65 -39.84 -0.38 -3.72 16 14 C -0.12 -3.15 8.72 -38.98 -0.34 -3.49 16 15 C 0.08 2.18 5.54 -106.41 -0.59 1.59 16 16 C -0.44 -11.05 6.72 -37.89 -0.25 -11.30 16 17 H 0.09 2.20 6.48 -52.49 -0.34 1.86 16 18 C 0.07 1.75 5.26 -17.31 -0.09 1.65 16 19 N -0.79 -19.28 10.91 55.55 0.61 -18.67 16 20 Si 0.91 17.99 29.58 -169.99 -5.03 12.96 16 21 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.08 -1.80 7.49 -39.16 -0.29 -2.09 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 27 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 28 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.37 3.18 9.12 45.56 0.42 3.60 16 32 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.83 8.07 -51.93 -0.42 0.42 16 36 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 37 H 0.13 3.25 6.34 -52.49 -0.33 2.92 16 38 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 39 H 0.13 3.02 6.76 -52.49 -0.35 2.66 16 LS Contribution 330.71 15.07 4.98 4.98 Total: -1.00 -29.23 330.71 -8.89 -38.12 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.38 Total: 10.48 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -4.53 Total: -28.03 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.55 Total: -29.89 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.48 Total: -8.63 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.23 -8.89 -38.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243699894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.151 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds