Wall clock time and date at job start Tue Mar 31 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31269 * 119.79804 * 2 1 4 4 C 1.33020 * 121.72594 * 180.26535 * 3 2 1 5 5 C 1.47968 * 119.45154 * 179.75180 * 4 3 2 6 6 C 1.39612 * 120.14154 * 359.73115 * 5 4 3 7 7 C 1.37936 * 119.84970 * 180.02562 * 6 5 4 8 8 C 1.38385 * 120.14707 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.85483 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.46768 * 90.00038 * 9 8 7 11 11 O 1.42907 * 109.46723 * 180.02562 * 10 9 8 12 12 C 1.38390 * 120.29094 * 0.22999 * 8 7 6 13 13 C 1.37931 * 120.14624 * 359.49072 * 12 8 7 14 14 C 1.39889 * 121.09616 * 359.47815 * 4 3 2 15 15 C 1.36603 * 119.47027 * 0.25708 * 14 4 3 16 16 C 1.40944 * 119.80198 * 179.74748 * 2 1 3 17 17 C 1.41053 * 120.55198 * 0.02562 * 16 2 1 18 18 H 1.07993 * 120.00326 * 334.65661 * 17 16 2 19 19 C 1.40031 * 119.99877 * 154.65261 * 17 16 2 20 20 N 1.30785 * 120.00229 * 343.67273 * 19 17 16 21 21 Si 1.86803 * 119.99826 * 163.66866 * 19 17 16 22 22 H 1.48496 * 109.47245 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46748 * 120.00210 * 21 19 17 24 24 H 1.48493 * 109.47221 * 240.00303 * 21 19 17 25 25 H 1.09003 * 109.47693 * 270.25014 * 1 2 3 26 26 H 1.09002 * 109.47814 * 30.25332 * 1 2 3 27 27 H 1.09000 * 109.47297 * 150.25293 * 1 2 3 28 28 H 1.07993 * 120.07629 * 0.04370 * 6 5 4 29 29 H 1.08001 * 119.92501 * 179.97438 * 7 6 5 30 30 H 1.08991 * 109.47209 * 329.99905 * 9 8 7 31 31 H 1.09004 * 109.47244 * 209.99475 * 9 8 7 32 32 H 1.08990 * 109.47273 * 299.99502 * 10 9 8 33 33 H 1.09001 * 109.47435 * 60.00102 * 10 9 8 34 34 H 0.96699 * 113.99707 * 179.97438 * 11 10 9 35 35 H 1.08004 * 119.92853 * 179.74448 * 12 8 7 36 36 H 1.08004 * 120.07766 * 180.28172 * 13 12 8 37 37 H 1.08007 * 120.26198 * 180.27124 * 14 4 3 38 38 H 1.08002 * 120.79773 * 179.97438 * 15 14 4 39 39 H 0.97000 * 120.00174 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1391 0.0000 4 6 3.4887 1.1839 -0.0052 5 6 4.1725 2.4961 -0.0105 6 6 3.4257 3.6757 -0.0157 7 6 4.0694 4.8957 -0.0212 8 6 5.4521 4.9520 -0.0221 9 6 6.1484 6.2884 -0.0287 10 6 6.3847 6.7474 1.4117 11 8 7.0446 8.0150 1.4054 12 6 6.1981 3.7864 -0.0223 13 6 5.5671 2.5600 -0.0110 14 6 4.2511 0.0110 -0.0001 15 6 3.6203 -1.2006 0.0052 16 6 2.2075 -1.2230 0.0054 17 6 1.5097 -2.4489 0.0103 18 1 0.5079 -2.4985 0.4104 19 6 2.1161 -3.6017 -0.5039 20 7 3.1735 -3.4996 -1.2668 21 14 1.4148 -5.2853 -0.0999 22 1 0.2251 -5.1290 0.7749 23 1 1.0183 -5.9706 -1.3562 24 1 2.4431 -6.0944 0.6021 25 1 -0.3634 0.0045 1.0276 26 1 -0.3635 0.8877 -0.5178 27 1 -0.3634 -0.8922 -0.5099 28 1 2.3466 3.6331 -0.0151 29 1 3.4929 5.8090 -0.0256 30 1 5.5269 7.0194 -0.5456 31 1 7.1054 6.1970 -0.5425 32 1 5.4279 6.8389 1.9255 33 1 7.0063 6.0163 1.9286 34 1 7.2263 8.3681 2.2871 35 1 7.2770 3.8372 -0.0272 36 1 6.1504 1.6511 -0.0066 37 1 5.3300 0.0631 0.0000 38 1 4.1878 -2.1195 0.0088 39 1 3.5938 -4.2981 -1.6226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243847302.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:46 Heat of formation + Delta-G solvation = -22.192625 kcal Electronic energy + Delta-G solvation = -20627.667096 eV Core-core repulsion = 17498.627800 eV Total energy + Delta-G solvation = -3129.039296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.27002 -38.23909 -36.91344 -34.45312 -33.19043 -31.58509 -30.81812 -30.31435 -28.25587 -27.01803 -25.05822 -23.18337 -22.34773 -21.57657 -20.30561 -19.85501 -17.62117 -17.49692 -16.30056 -15.65899 -15.37529 -14.89503 -14.60276 -14.25905 -14.00427 -13.80862 -13.32836 -13.26565 -12.97046 -12.55201 -12.30731 -11.88808 -11.85778 -11.70419 -11.61424 -11.48792 -11.33455 -11.03963 -10.95284 -10.76634 -10.54960 -10.52219 -10.07175 -9.84063 -9.57481 -8.57092 -8.47161 -8.29029 -8.10955 -7.26407 -7.00121 -4.58928 1.48980 1.91414 2.60218 2.87684 2.92125 2.96987 3.10490 3.70046 4.03884 4.27714 4.61600 4.93832 5.17371 5.23860 5.27288 5.37293 5.51049 5.52057 5.53872 5.73503 5.92859 5.96602 6.00430 6.15292 6.26964 6.38017 6.48137 6.57204 6.59172 6.68867 6.74162 6.79177 6.91679 6.99556 7.02620 7.21944 7.29149 7.44569 7.46045 7.65860 7.75031 7.84714 8.26677 8.46948 8.57466 9.53174 9.84063 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.039449 B = 0.003139 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.615475 B = 8918.730747 C = 9421.387442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.008 3.992 3 N -0.446 5.446 4 C -0.005 4.005 5 C 0.023 3.977 6 C -0.112 4.112 7 C -0.112 4.112 8 C -0.122 4.122 9 C -0.070 4.070 10 C 0.080 3.920 11 O -0.579 6.579 12 C -0.110 4.110 13 C -0.134 4.134 14 C -0.125 4.125 15 C -0.143 4.143 16 C 0.073 3.927 17 C -0.429 4.429 18 H 0.090 0.910 19 C 0.071 3.929 20 N -0.776 5.776 21 Si 0.914 3.086 22 H -0.256 1.256 23 H -0.271 1.271 24 H -0.269 1.269 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.378 0.622 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 8.848 3.561 10.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.137 4.137 3 N -0.154 5.154 4 C -0.139 4.139 5 C 0.022 3.978 6 C -0.131 4.131 7 C -0.130 4.130 8 C -0.122 4.122 9 C -0.108 4.108 10 C 0.002 3.998 11 O -0.385 6.385 12 C -0.128 4.128 13 C -0.153 4.153 14 C -0.145 4.145 15 C -0.168 4.168 16 C 0.069 3.931 17 C -0.458 4.458 18 H 0.108 0.892 19 C -0.150 4.150 20 N -0.399 5.399 21 Si 0.738 3.262 22 H -0.180 1.180 23 H -0.196 1.196 24 H -0.194 1.194 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.146 0.854 29 H 0.131 0.869 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.224 0.776 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.144 0.856 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.619 9.375 2.759 10.421 hybrid contribution 0.418 -1.691 0.660 1.863 sum 4.037 7.684 3.419 9.329 Atomic orbital electron populations 1.20259 0.90984 1.01278 1.00393 1.21004 0.95152 0.87979 1.09613 1.66721 1.08656 1.30424 1.09607 1.18746 0.89074 0.90689 1.15352 1.18726 0.92056 0.92196 0.94823 1.21252 1.00516 0.91083 1.00232 1.20888 0.93541 0.97511 1.01105 1.19484 0.93648 0.93787 1.05310 1.20342 1.00801 0.94069 0.95580 1.22234 0.95788 0.84215 0.97547 1.86453 1.81313 1.36865 1.33830 1.20780 0.98887 0.91927 1.01176 1.21173 0.93937 0.97405 1.02763 1.21301 0.98617 0.93481 1.01119 1.21305 0.94700 0.96626 1.04120 1.18434 0.92557 0.93216 0.88927 1.19741 1.01688 0.91844 1.32528 0.89210 1.26111 0.94210 1.02141 0.92507 1.69785 1.16959 1.32405 1.20746 0.86139 0.80265 0.80278 0.79525 1.17978 1.19620 1.19413 0.93304 0.93141 0.91445 0.85369 0.86877 0.90853 0.90875 0.93481 0.93500 0.77593 0.86828 0.86152 0.88085 0.85600 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.58 36.00 0.34 -1.11 16 2 C 0.01 0.21 6.86 -81.81 -0.56 -0.35 16 3 N -0.45 -10.84 9.30 -5.39 -0.05 -10.89 16 4 C 0.00 -0.11 6.74 -82.75 -0.56 -0.67 16 5 C 0.02 0.46 5.88 -104.89 -0.62 -0.15 16 6 C -0.11 -2.08 9.57 -39.18 -0.38 -2.45 16 7 C -0.11 -1.75 9.68 -39.64 -0.38 -2.14 16 8 C -0.12 -1.77 5.14 -104.51 -0.54 -2.31 16 9 C -0.07 -0.86 5.71 -27.88 -0.16 -1.02 16 10 C 0.08 0.86 7.03 37.16 0.26 1.13 16 11 O -0.58 -6.08 13.66 -35.23 -0.48 -6.56 16 12 C -0.11 -1.66 9.68 -39.64 -0.38 -2.05 16 13 C -0.13 -2.35 9.42 -39.18 -0.37 -2.72 16 14 C -0.12 -2.90 9.38 -39.55 -0.37 -3.27 16 15 C -0.14 -3.56 8.73 -39.01 -0.34 -3.90 16 16 C 0.07 1.87 5.58 -106.64 -0.59 1.27 16 17 C -0.43 -10.41 8.14 -37.84 -0.31 -10.71 16 18 H 0.09 2.05 6.86 -52.49 -0.36 1.69 16 19 C 0.07 1.63 5.19 -17.33 -0.09 1.54 16 20 N -0.78 -18.51 10.95 55.55 0.61 -17.91 16 21 Si 0.91 17.02 29.59 -169.99 -5.03 11.99 16 22 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 23 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 24 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.33 6.76 -51.93 -0.35 0.98 16 28 H 0.13 2.44 7.52 -52.49 -0.39 2.05 16 29 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 30 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.38 2.16 9.12 45.56 0.42 2.58 16 35 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.12 2.00 6.15 -52.48 -0.32 1.67 16 37 H 0.10 2.06 6.15 -52.48 -0.32 1.74 16 38 H 0.13 3.16 6.26 -52.49 -0.33 2.83 16 39 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 LS Contribution 329.09 15.07 4.96 4.96 Total: -1.00 -28.08 329.09 -9.21 -37.29 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.18 Total: 10.03 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -5.04 Total: -28.92 kcal Atomic # 7 Polarization: -29.36 SS G_CDS: 0.56 Total: -28.80 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.48 Total: -6.56 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.08 -9.21 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243847302.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.102 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds