Wall clock time and date at job start Tue Mar 31 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38868 * 119.24746 * 2 1 4 4 C 1.36889 * 119.79989 * 180.02562 * 3 2 1 5 5 C 1.41123 * 118.39350 * 0.02562 * 4 3 2 6 6 C 1.40882 * 120.71831 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00489 * 150.53226 * 6 5 4 8 8 C 1.40070 * 120.00022 * 330.52109 * 6 5 4 9 9 N 1.30771 * 120.00274 * 163.14154 * 8 6 5 10 10 Si 1.86800 * 119.99995 * 343.14990 * 8 6 5 11 11 H 1.48495 * 109.47343 * 90.32300 * 10 8 6 12 12 H 1.48506 * 109.47002 * 210.32292 * 10 8 6 13 13 H 1.48500 * 109.47182 * 330.32044 * 10 8 6 14 14 C 1.41866 * 118.56416 * 359.97438 * 5 4 3 15 15 C 1.47813 * 119.99432 * 179.97438 * 14 5 4 16 16 C 1.39680 * 120.15144 * 136.48991 * 15 14 5 17 17 C 1.37921 * 119.84259 * 180.02562 * 16 15 14 18 18 C 1.38390 * 120.15629 * 0.02562 * 17 16 15 19 19 C 1.50704 * 119.85122 * 179.70621 * 18 17 16 20 20 C 1.53000 * 109.47321 * 89.99565 * 19 18 17 21 21 O 1.42894 * 109.46913 * 180.02562 * 20 19 18 22 22 C 1.38406 * 120.30568 * 359.97438 * 18 17 16 23 23 C 1.37915 * 120.15363 * 359.97438 * 22 18 17 24 24 N 1.31744 * 119.24753 * 180.27766 * 2 1 3 25 25 H 1.08997 * 109.47843 * 89.99945 * 1 2 3 26 26 H 1.08998 * 109.47494 * 210.00051 * 1 2 3 27 27 H 1.09006 * 109.46905 * 329.99846 * 1 2 3 28 28 H 1.07997 * 120.10052 * 0.04454 * 3 2 1 29 29 H 1.07998 * 120.80433 * 179.97438 * 4 3 2 30 30 H 0.96996 * 120.00199 * 180.02562 * 9 8 6 31 31 H 1.07995 * 120.07524 * 0.04083 * 16 15 14 32 32 H 1.08001 * 119.91656 * 180.02562 * 17 16 15 33 33 H 1.08994 * 109.47089 * 210.00184 * 19 18 17 34 34 H 1.09003 * 109.46349 * 329.99798 * 19 18 17 35 35 H 1.09001 * 109.46902 * 300.00434 * 20 19 18 36 36 H 1.08996 * 109.46829 * 60.00208 * 20 19 18 37 37 H 0.96699 * 113.99912 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.92164 * 179.97438 * 22 18 17 39 39 H 1.07995 * 120.08106 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1854 1.2117 0.0000 4 6 3.5542 1.2248 -0.0005 5 6 4.2373 -0.0101 -0.0016 6 6 5.6454 -0.0537 -0.0017 7 1 6.1600 -0.8847 0.4577 8 6 6.3781 0.9807 -0.5977 9 7 7.6487 1.1241 -0.3237 10 14 5.5401 2.1555 -1.7839 11 1 4.9995 3.3163 -1.0319 12 1 6.5254 2.6316 -2.7879 13 1 4.4295 1.4526 -2.4750 14 6 3.4752 -1.2067 -0.0016 15 6 4.1581 -2.5176 -0.0033 16 6 3.7063 -3.5451 0.8281 17 6 4.3486 -4.7657 0.8218 18 6 5.4386 -4.9734 -0.0052 19 6 6.1393 -6.3076 -0.0018 20 6 5.4959 -7.2244 -1.0441 21 8 6.1600 -8.4896 -1.0403 22 6 5.8915 -3.9597 -0.8316 23 6 5.2582 -2.7346 -0.8362 24 7 2.1506 -1.1495 -0.0056 25 1 -0.3635 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6348 2.1407 0.0007 29 1 4.0983 2.1578 -0.0010 30 1 8.1560 1.8406 -0.7361 31 1 2.8560 -3.3843 1.4741 32 1 4.0000 -5.5611 1.4638 33 1 7.1925 -6.1654 -0.2436 34 1 6.0512 -6.7616 0.9853 35 1 4.4426 -7.3665 -0.8022 36 1 5.5840 -6.7703 -2.0311 37 1 5.8034 -9.1229 -1.6781 38 1 6.7430 -4.1285 -1.4742 39 1 5.6123 -1.9446 -1.4818 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243847814.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:49 Heat of formation + Delta-G solvation = -17.954839 kcal Electronic energy + Delta-G solvation = -21257.177471 eV Core-core repulsion = 18128.321938 eV Total energy + Delta-G solvation = -3128.855532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.33644 -38.27589 -36.81379 -34.37115 -33.27561 -31.80752 -30.99334 -30.30023 -28.31844 -27.61743 -24.49567 -23.14698 -22.24355 -21.55917 -20.85778 -19.86268 -17.62452 -17.47831 -16.23901 -15.75650 -15.41599 -14.81311 -14.52236 -14.15440 -14.03726 -13.90586 -13.58922 -13.35291 -12.94836 -12.75845 -12.30969 -12.10204 -11.98318 -11.78544 -11.65191 -11.60488 -11.27865 -11.08103 -10.86074 -10.77183 -10.38042 -10.30654 -9.97243 -9.96069 -9.57601 -8.71275 -8.31760 -8.28260 -8.07032 -7.42117 -7.18285 -4.65459 1.65501 2.10319 2.38119 2.63870 2.93286 3.04780 3.14122 3.76567 4.15274 4.33609 4.50897 5.05606 5.19976 5.25945 5.32418 5.35490 5.54855 5.61727 5.64556 5.78007 5.84489 5.93151 6.07025 6.11467 6.15720 6.24735 6.27667 6.33278 6.40306 6.54695 6.62753 6.73455 6.79990 6.90906 7.14816 7.17843 7.23975 7.39842 7.52914 7.54117 7.68490 7.72597 8.09857 8.32533 8.50055 9.32453 9.80742 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.005315 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.178554 B = 5266.816941 C = 6666.556233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.018 4.018 3 C -0.114 4.114 4 C -0.209 4.209 5 C 0.060 3.940 6 C -0.420 4.420 7 H 0.104 0.896 8 C 0.083 3.917 9 N -0.787 5.787 10 Si 0.910 3.090 11 H -0.266 1.266 12 H -0.286 1.286 13 H -0.247 1.247 14 C 0.036 3.964 15 C 0.018 3.982 16 C -0.105 4.105 17 C -0.123 4.123 18 C -0.107 4.107 19 C -0.072 4.072 20 C 0.080 3.920 21 O -0.579 6.579 22 C -0.120 4.120 23 C -0.087 4.087 24 N -0.438 5.438 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.290 0.710 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.377 0.623 38 H 0.115 0.885 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.941 -7.369 -2.360 8.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.157 4.157 3 C -0.134 4.134 4 C -0.234 4.234 5 C 0.054 3.946 6 C -0.448 4.448 7 H 0.122 0.878 8 C -0.139 4.139 9 N -0.410 5.410 10 Si 0.737 3.263 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.170 1.170 14 C -0.105 4.105 15 C 0.017 3.983 16 C -0.124 4.124 17 C -0.141 4.141 18 C -0.107 4.107 19 C -0.110 4.110 20 C 0.003 3.997 21 O -0.384 6.384 22 C -0.139 4.139 23 C -0.106 4.106 24 N -0.146 5.146 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.223 0.777 38 H 0.133 0.867 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.796 -7.711 -1.900 8.802 hybrid contribution -0.013 1.405 -0.852 1.643 sum -3.808 -6.306 -2.752 7.864 Atomic orbital electron populations 1.20283 0.91109 1.01098 1.00663 1.20260 0.95085 0.88257 1.12065 1.21179 0.94794 0.97627 0.99836 1.21214 0.94102 0.97652 1.10473 1.18423 0.94431 0.91052 0.90649 1.19552 0.89505 1.06174 1.29589 0.87827 1.26243 0.94804 0.96565 0.96292 1.69644 1.08817 1.28267 1.34242 0.86363 0.79697 0.80341 0.79940 1.19213 1.21346 1.16983 1.19451 0.88145 0.91341 1.11524 1.18404 0.93908 0.91431 0.94545 1.21196 0.99574 0.92633 0.99034 1.20773 0.96369 0.97117 0.99856 1.19527 0.97400 0.94804 0.99015 1.20368 0.99618 0.91745 0.99230 1.22226 0.95289 0.83408 0.98813 1.86455 1.62363 1.25322 1.64275 1.20856 1.00194 0.93168 0.99636 1.21429 0.94636 0.96369 0.98146 1.66890 1.09558 1.29262 1.08924 0.93039 0.92367 0.92763 0.87800 0.86947 0.89930 0.86459 0.86990 0.90722 0.90867 0.93525 0.93439 0.77683 0.86730 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.15 36.00 0.37 -0.87 16 2 C -0.02 -0.37 6.79 -82.40 -0.56 -0.93 16 3 C -0.11 -2.43 9.64 -39.84 -0.38 -2.82 16 4 C -0.21 -4.88 7.32 -38.98 -0.29 -5.16 16 5 C 0.06 1.47 5.12 -106.42 -0.54 0.92 16 6 C -0.42 -10.57 7.20 -37.90 -0.27 -10.84 16 7 H 0.10 2.76 6.71 -52.49 -0.35 2.41 16 8 C 0.08 2.01 5.44 -17.32 -0.09 1.91 16 9 N -0.79 -19.44 13.92 55.55 0.77 -18.67 16 10 Si 0.91 19.49 24.53 -169.99 -4.17 15.32 16 11 H -0.27 -5.52 6.46 56.52 0.37 -5.15 16 12 H -0.29 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.25 -5.51 7.00 56.52 0.40 -5.11 16 14 C 0.04 0.86 6.43 -82.24 -0.53 0.33 16 15 C 0.02 0.39 5.26 -104.90 -0.55 -0.16 16 16 C -0.11 -2.04 9.67 -39.16 -0.38 -2.42 16 17 C -0.12 -2.05 9.68 -39.64 -0.38 -2.43 16 18 C -0.11 -1.72 5.14 -104.50 -0.54 -2.26 16 19 C -0.07 -0.98 5.71 -27.88 -0.16 -1.13 16 20 C 0.08 0.95 7.03 37.16 0.26 1.21 16 21 O -0.58 -6.59 13.66 -35.23 -0.48 -7.08 16 22 C -0.12 -2.11 9.68 -39.64 -0.38 -2.49 16 23 C -0.09 -1.78 7.87 -39.16 -0.31 -2.08 16 24 N -0.44 -10.18 10.06 -5.45 -0.05 -10.23 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 28 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.11 2.55 4.52 -52.49 -0.24 2.31 16 30 H 0.29 6.47 8.29 -40.82 -0.34 6.13 16 31 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.38 2.46 9.12 45.56 0.42 2.88 16 38 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.13 2.86 6.74 -52.49 -0.35 2.51 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -28.03 325.26 -8.12 -36.15 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.35 Total: 8.83 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -4.74 Total: -29.23 kcal Atomic # 7 Polarization: -29.62 SS G_CDS: 0.72 Total: -28.90 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.48 Total: -7.08 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.17 Total: 15.32 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.03 -8.12 -36.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243847814.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.196 kcal (2) G-P(sol) polarization free energy of solvation -28.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds