Wall clock time and date at job start Tue Mar 31 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35773 * 116.99917 * 2 1 4 4 C 1.39016 * 119.90600 * 359.97438 * 3 2 1 5 5 C 1.37709 * 120.09830 * 179.97438 * 4 3 2 6 6 C 1.39803 * 119.90153 * 0.02562 * 5 4 3 7 7 C 1.47686 * 120.09488 * 179.97438 * 6 5 4 8 8 N 1.32639 * 119.99877 * 128.82258 * 7 6 5 9 9 C 1.31731 * 121.71191 * 179.97438 * 8 7 6 10 10 C 1.38878 * 121.51371 * 0.03040 * 9 8 7 11 11 C 1.36875 * 119.81317 * 359.97128 * 10 9 8 12 12 C 1.41124 * 118.40221 * 0.25662 * 11 10 9 13 13 C 1.40841 * 120.72475 * 179.74580 * 12 11 10 14 14 H 1.07996 * 120.00436 * 149.20746 * 13 12 11 15 15 C 1.40041 * 119.99759 * 329.20744 * 13 12 11 16 16 N 1.30793 * 120.00547 * 348.44991 * 15 13 12 17 17 Si 1.86811 * 119.99917 * 168.45117 * 15 13 12 18 18 H 1.48498 * 109.47049 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46994 * 120.00012 * 17 15 13 20 20 H 1.48496 * 109.46746 * 239.99980 * 17 15 13 21 21 C 1.39766 * 119.81474 * 0.25361 * 6 5 4 22 22 C 1.50694 * 120.04944 * 179.72342 * 21 6 5 23 23 C 1.37752 * 119.90050 * 359.46710 * 21 6 5 24 24 C 1.50702 * 119.95337 * 180.27433 * 23 21 6 25 25 H 1.08999 * 109.47275 * 60.00182 * 1 2 3 26 26 H 1.09002 * 109.46951 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47378 * 299.99611 * 1 2 3 28 28 H 1.08001 * 119.95222 * 359.97438 * 4 3 2 29 29 H 1.07999 * 120.04874 * 179.97438 * 5 4 3 30 30 H 1.07999 * 119.24408 * 180.02562 * 9 8 7 31 31 H 1.08000 * 120.09367 * 179.97438 * 10 9 8 32 32 H 1.08000 * 120.80235 * 179.97438 * 11 10 9 33 33 H 0.96994 * 120.00531 * 179.97438 * 16 15 13 34 34 H 1.09009 * 109.47352 * 87.65775 * 22 21 6 35 35 H 1.09006 * 109.47306 * 207.65483 * 22 21 6 36 36 H 1.08997 * 109.47155 * 327.65970 * 22 21 6 37 37 H 1.09006 * 109.46903 * 270.28295 * 24 23 21 38 38 H 1.09006 * 109.46983 * 30.27914 * 24 23 21 39 39 H 1.08994 * 109.47440 * 150.28355 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.2863 2.3744 -0.0005 5 6 1.9074 3.6035 0.0000 6 6 3.3034 3.6790 0.0005 7 6 3.9739 4.9948 0.0005 8 7 4.9162 5.2590 0.8958 9 6 5.5363 6.4208 0.9262 10 6 5.2332 7.4293 0.0208 11 6 4.2704 7.2235 -0.9300 12 6 3.6063 5.9785 -0.9543 13 6 2.6038 5.7161 -1.9081 14 1 2.4504 4.7093 -2.2675 15 6 1.8059 6.7609 -2.3907 16 7 1.8310 7.9287 -1.8022 17 14 0.7053 6.4868 -3.8751 18 1 0.8592 5.0896 -4.3540 19 1 -0.7096 6.7268 -3.4934 20 1 1.0921 7.4262 -4.9582 21 6 4.0627 2.5056 -0.0048 22 6 5.5678 2.5808 -0.0106 23 6 3.4333 1.2803 0.0005 24 6 4.2510 0.0144 0.0009 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2079 2.3152 -0.0014 29 1 1.3169 4.5078 -0.0008 30 1 6.2979 6.5930 1.6723 31 1 5.7557 8.3734 0.0668 32 1 4.0216 7.9968 -1.6417 33 1 1.2787 8.6524 -2.1366 34 1 5.9327 2.6388 1.0150 35 1 5.9743 1.6907 -0.4910 36 1 5.8852 3.4672 -0.5597 37 1 4.4489 -0.2907 -1.0267 38 1 5.1954 0.1920 0.5155 39 1 3.7002 -0.7738 0.5142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243989855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:20 Heat of formation + Delta-G solvation = -0.491234 kcal Electronic energy + Delta-G solvation = -22010.923148 eV Core-core repulsion = 18882.824894 eV Total energy + Delta-G solvation = -3128.098254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.84447 -38.49822 -36.90676 -34.16511 -32.88230 -31.69093 -30.53720 -29.34590 -27.34828 -26.67629 -25.62165 -25.38652 -22.31855 -21.55502 -20.10979 -19.79454 -17.38524 -17.13082 -16.05864 -15.78472 -15.47830 -15.34164 -14.40117 -14.10661 -13.80045 -13.50185 -13.40857 -12.99598 -12.53776 -12.42060 -12.20660 -12.14176 -11.84276 -11.65558 -11.57652 -11.51226 -11.35949 -11.20396 -11.10732 -10.90129 -10.55738 -10.36579 -10.10633 -9.78121 -9.45064 -8.34870 -8.07235 -7.98598 -7.75793 -7.13515 -6.85300 -4.53188 1.90457 2.02836 2.61746 2.93012 2.98870 3.05104 3.13743 3.63787 3.81413 4.38756 4.55978 5.19989 5.31149 5.31725 5.41716 5.47207 5.57001 5.64060 5.80481 5.83033 5.90452 6.02310 6.12378 6.20713 6.25993 6.35681 6.39441 6.53939 6.58820 6.68249 6.77212 6.92420 6.99265 7.01653 7.04820 7.27331 7.37020 7.49669 7.69144 7.80182 7.89467 7.94271 8.38185 8.60462 8.67487 9.56196 10.01645 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013585 B = 0.007187 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.600166 B = 3894.748414 C = 5473.713417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.107 3.893 4 C -0.216 4.216 5 C -0.053 4.053 6 C -0.008 4.008 7 C 0.026 3.974 8 N -0.451 5.451 9 C -0.031 4.031 10 C -0.152 4.152 11 C -0.126 4.126 12 C 0.086 3.914 13 C -0.442 4.442 14 H 0.086 0.914 15 C 0.074 3.926 16 N -0.794 5.794 17 Si 0.907 3.093 18 H -0.257 1.257 19 H -0.272 1.272 20 H -0.271 1.271 21 C -0.040 4.040 22 C -0.097 4.097 23 C -0.129 4.129 24 C -0.097 4.097 25 H 0.052 0.948 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.283 0.717 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 -8.597 0.478 8.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.062 3.938 4 C -0.234 4.234 5 C -0.072 4.072 6 C -0.009 4.009 7 C -0.112 4.112 8 N -0.158 5.158 9 C -0.192 4.192 10 C -0.172 4.172 11 C -0.152 4.152 12 C 0.081 3.919 13 C -0.471 4.471 14 H 0.104 0.896 15 C -0.144 4.144 16 N -0.418 5.418 17 Si 0.732 3.268 18 H -0.181 1.181 19 H -0.198 1.198 20 H -0.196 1.196 21 C -0.041 4.041 22 C -0.154 4.154 23 C -0.129 4.129 24 C -0.154 4.154 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.141 0.859 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.242 -9.174 1.070 9.319 hybrid contribution -1.214 1.155 -1.283 2.111 sum -2.455 -8.019 -0.213 8.389 Atomic orbital electron populations 1.22934 0.79409 1.02936 1.01237 1.85945 1.20489 1.27626 1.89446 1.18767 0.91568 0.83619 0.99832 1.20999 0.99162 0.92311 1.10972 1.21103 0.94104 0.96747 0.95275 1.18213 0.91910 0.90950 0.99851 1.19451 1.00549 0.94729 0.96497 1.67127 1.06058 1.20839 1.21793 1.21675 1.04132 0.90857 1.02512 1.21425 0.99296 0.98637 0.97833 1.21355 0.95446 0.98885 0.99542 1.18358 0.91381 0.91160 0.90976 1.19542 1.13094 0.95616 1.18869 0.89588 1.25959 0.97202 0.94306 0.96928 1.69756 1.33515 1.02871 1.35707 0.86244 0.79453 0.80141 0.81009 1.18087 1.19765 1.19588 1.19661 0.95934 0.90784 0.97725 1.20647 0.91031 1.01445 1.02272 1.18811 0.90196 0.95235 1.08703 1.20533 0.98810 0.94574 1.01475 0.92952 0.89025 0.93032 0.86307 0.85173 0.86234 0.88431 0.85926 0.90605 0.91086 0.92840 0.91378 0.92198 0.91871 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.05 9.52 -19.03 -0.18 -5.23 16 3 C 0.11 1.92 6.67 -39.02 -0.26 1.66 16 4 C -0.22 -3.95 9.02 -39.49 -0.36 -4.31 16 5 C -0.05 -1.13 8.11 -39.19 -0.32 -1.45 16 6 C -0.01 -0.18 5.04 -104.88 -0.53 -0.71 16 7 C 0.03 0.64 5.36 -82.25 -0.44 0.20 16 8 N -0.45 -10.78 8.98 -9.18 -0.08 -10.86 16 9 C -0.03 -0.70 11.16 -17.36 -0.19 -0.90 16 10 C -0.15 -3.42 10.03 -39.84 -0.40 -3.81 16 11 C -0.13 -3.14 8.70 -38.98 -0.34 -3.48 16 12 C 0.09 2.19 5.52 -106.41 -0.59 1.61 16 13 C -0.44 -11.02 7.04 -37.92 -0.27 -11.29 16 14 H 0.09 2.15 6.88 -52.49 -0.36 1.78 16 15 C 0.07 1.76 5.25 -17.32 -0.09 1.67 16 16 N -0.79 -19.39 11.06 55.55 0.61 -18.78 16 17 Si 0.91 17.95 29.58 -169.99 -5.03 12.93 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.04 -0.81 5.91 -104.23 -0.62 -1.43 16 22 C -0.10 -1.78 8.14 36.00 0.29 -1.49 16 23 C -0.13 -2.36 5.89 -104.53 -0.62 -2.98 16 24 C -0.10 -1.45 8.95 36.01 0.32 -1.12 16 25 H 0.05 0.58 7.65 -51.93 -0.40 0.19 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 28 H 0.12 1.85 6.28 -52.49 -0.33 1.52 16 29 H 0.13 2.86 7.38 -52.49 -0.39 2.48 16 30 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 31 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 32 H 0.12 3.09 6.51 -52.49 -0.34 2.75 16 33 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 34 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 35 H 0.05 0.82 6.58 -51.93 -0.34 0.48 16 36 H 0.07 1.38 6.89 -51.93 -0.36 1.02 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.86 6.66 -51.93 -0.35 0.51 16 39 H 0.06 0.88 7.52 -51.93 -0.39 0.49 16 LS Contribution 319.88 15.07 4.82 4.82 Total: -1.00 -27.58 319.88 -8.16 -35.74 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.90 Total: 7.87 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -3.41 Total: -26.48 kcal Atomic # 7 Polarization: -30.17 SS G_CDS: 0.53 Total: -29.64 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.18 Total: -5.23 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.58 -8.16 -35.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243989855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.246 kcal (2) G-P(sol) polarization free energy of solvation -27.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds