Wall clock time and date at job start Tue Mar 31 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35836 * 117.00325 * 2 1 4 4 C 1.38879 * 119.93727 * 359.97438 * 3 2 1 5 5 C 1.37858 * 120.07118 * 180.02562 * 4 3 2 6 6 C 1.39430 * 119.92835 * 359.74656 * 5 4 3 7 7 C 1.48306 * 120.06547 * 180.27210 * 6 5 4 8 8 C 1.38952 * 119.61208 * 46.89432 * 7 6 5 9 9 C 1.40829 * 118.75714 * 179.97438 * 8 7 6 10 10 C 1.41527 * 120.98202 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99875 * 201.81919 * 10 9 8 12 12 C 1.40042 * 120.00357 * 21.82582 * 10 9 8 13 13 N 1.30734 * 119.99784 * 17.28994 * 12 10 9 14 14 Si 1.86798 * 120.00034 * 197.29157 * 12 10 9 15 15 H 1.48498 * 109.47228 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47227 * 119.99582 * 14 12 10 17 17 H 1.48498 * 109.47137 * 239.99644 * 14 12 10 18 18 C 1.41154 * 118.02826 * 359.97438 * 9 8 7 19 19 C 1.37714 * 119.08496 * 359.97438 * 18 9 8 20 20 N 1.31938 * 121.16024 * 359.74466 * 19 18 9 21 21 C 1.39388 * 119.87343 * 0.50560 * 6 5 4 22 22 C 1.50698 * 120.04026 * 179.76966 * 21 6 5 23 23 C 1.37898 * 119.92981 * 359.49689 * 21 6 5 24 24 C 1.50699 * 119.96916 * 180.22924 * 23 21 6 25 25 H 1.08993 * 109.47541 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46821 * 300.00421 * 1 2 3 27 27 H 1.08999 * 109.46982 * 59.99572 * 1 2 3 28 28 H 1.08005 * 119.96105 * 0.04687 * 4 3 2 29 29 H 1.07999 * 120.03440 * 180.02562 * 5 4 3 30 30 H 1.07996 * 120.62259 * 359.95809 * 8 7 6 31 31 H 0.97006 * 119.99504 * 180.02562 * 13 12 10 32 32 H 1.08001 * 120.45748 * 179.97438 * 18 9 8 33 33 H 1.08005 * 119.42089 * 180.02562 * 19 18 9 34 34 H 1.09004 * 109.46878 * 269.03908 * 22 21 6 35 35 H 1.08998 * 109.47161 * 29.03363 * 22 21 6 36 36 H 1.08998 * 109.47511 * 149.04123 * 22 21 6 37 37 H 1.09010 * 109.46926 * 89.99786 * 24 23 21 38 38 H 1.08999 * 109.47423 * 209.99397 * 24 23 21 39 39 H 1.08997 * 109.47329 * 330.00287 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2881 2.3742 -0.0005 5 6 1.9112 3.6040 -0.0011 6 6 3.3035 3.6784 0.0043 7 6 3.9769 4.9997 0.0098 8 6 3.5499 5.9843 0.8925 9 6 4.2025 7.2322 0.8828 10 6 3.8059 8.2686 1.7612 11 1 4.0450 9.2956 1.5275 12 6 3.1036 7.9625 2.9335 13 7 3.1034 6.7393 3.3949 14 14 2.1669 9.3020 3.8378 15 1 2.3247 10.5901 3.1158 16 1 0.7274 8.9429 3.9014 17 1 2.7045 9.4382 5.2153 18 6 5.2639 7.4186 -0.0289 19 6 5.6175 6.3833 -0.8654 20 7 4.9859 5.2257 -0.8236 21 6 4.0613 2.5085 -0.0005 22 6 5.5664 2.5846 0.0000 23 6 3.4324 1.2813 0.0000 24 6 4.2508 0.0159 0.0000 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.2097 2.3158 -0.0002 29 1 1.3215 4.5087 -0.0011 30 1 2.7327 5.7961 1.5730 31 1 2.6166 6.5273 4.2067 32 1 5.7914 8.3602 -0.0699 33 1 6.4291 6.5199 -1.5648 34 1 5.9302 2.5900 -1.0275 35 1 5.8838 3.4982 0.5026 36 1 5.9737 1.7206 0.5251 37 1 4.4485 -0.2889 1.0278 38 1 3.7007 -0.7727 -0.5134 39 1 5.1953 0.1941 -0.5141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243993376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:25 Heat of formation + Delta-G solvation = -1.218759 kcal Electronic energy + Delta-G solvation = -21577.334792 eV Core-core repulsion = 18449.204991 eV Total energy + Delta-G solvation = -3128.129801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02950 -38.48375 -37.07474 -34.17389 -33.09713 -31.75963 -30.46078 -29.13340 -27.45615 -26.68158 -25.83391 -25.62985 -22.45074 -21.60791 -20.29362 -19.88874 -17.46224 -17.32044 -16.21232 -15.63012 -15.57808 -14.96322 -14.36423 -14.21058 -13.99706 -13.59070 -13.55876 -13.09362 -12.70992 -12.67104 -12.42995 -12.17117 -12.03164 -11.76059 -11.71170 -11.51073 -11.28706 -11.19317 -11.05378 -10.86699 -10.58282 -10.31599 -10.28667 -9.84600 -9.45724 -8.24398 -8.13401 -7.97474 -7.93453 -7.10591 -6.87845 -4.62590 1.71154 1.78574 2.72333 2.82633 2.99785 3.04982 3.21690 3.47330 3.81877 4.17205 4.60453 5.04913 5.13426 5.18844 5.26477 5.27620 5.46080 5.59705 5.64233 5.70796 5.72478 5.92646 5.96810 6.08100 6.18265 6.27169 6.35435 6.47202 6.60283 6.72394 6.75737 6.78784 6.87980 7.01690 7.09146 7.16400 7.23841 7.37755 7.46435 7.69717 7.84302 8.08159 8.41838 8.70444 8.71074 9.57233 10.01967 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.005077 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.621644 B = 5513.240593 C = 6586.945742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.114 3.886 4 C -0.212 4.212 5 C -0.069 4.069 6 C -0.036 4.036 7 C 0.142 3.858 8 C -0.192 4.192 9 C 0.124 3.876 10 C -0.454 4.454 11 H 0.082 0.918 12 C 0.077 3.923 13 N -0.782 5.782 14 Si 0.910 3.090 15 H -0.259 1.259 16 H -0.270 1.270 17 H -0.273 1.273 18 C -0.275 4.275 19 C 0.100 3.900 20 N -0.559 5.559 21 C -0.024 4.024 22 C -0.100 4.100 23 C -0.126 4.126 24 C -0.099 4.099 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.283 0.717 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.892 -9.227 -2.760 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.070 3.930 4 C -0.231 4.231 5 C -0.088 4.088 6 C -0.037 4.037 7 C 0.012 3.988 8 C -0.215 4.215 9 C 0.116 3.884 10 C -0.485 4.485 11 H 0.100 0.900 12 C -0.143 4.143 13 N -0.407 5.407 14 Si 0.734 3.266 15 H -0.182 1.182 16 H -0.195 1.195 17 H -0.198 1.198 18 C -0.298 4.298 19 C -0.055 4.055 20 N -0.274 5.274 21 C -0.024 4.024 22 C -0.156 4.156 23 C -0.127 4.127 24 C -0.156 4.156 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.616 -10.248 -3.131 11.309 hybrid contribution -1.089 1.604 1.160 2.259 sum -4.705 -8.644 -1.972 10.037 Atomic orbital electron populations 1.22966 0.79181 1.03198 1.01262 1.85985 1.20673 1.27365 1.89255 1.18742 0.91619 0.83742 0.98931 1.20976 0.99329 0.92171 1.10618 1.20949 0.93719 0.96869 0.97263 1.18536 0.92140 0.91877 1.01193 1.19183 0.93783 0.91736 0.94109 1.22276 1.03269 0.94339 1.01599 1.17779 0.88383 0.92323 0.89928 1.19650 1.30695 0.94790 1.03340 0.89980 1.25991 0.94620 0.96431 0.97246 1.69782 1.31771 1.20229 1.18899 0.86223 0.79602 0.81552 0.79212 1.18227 1.19531 1.19789 1.21879 1.02626 1.00188 1.05126 1.21822 0.97415 0.89379 0.96894 1.67453 1.11203 1.23284 1.25480 1.19617 0.96341 0.90471 0.96005 1.20711 0.90455 1.02015 1.02429 1.18916 0.90284 0.95440 1.08020 1.20558 0.98906 0.94363 1.01749 0.88801 0.92864 0.92953 0.85973 0.85815 0.85155 0.90561 0.88228 0.86160 0.90785 0.90701 0.92829 0.91925 0.91762 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.64 9.52 -19.22 -0.18 -4.83 16 3 C 0.11 1.92 6.66 -39.12 -0.26 1.66 16 4 C -0.21 -3.54 9.02 -39.48 -0.36 -3.90 16 5 C -0.07 -1.33 9.40 -39.28 -0.37 -1.70 16 6 C -0.04 -0.78 5.62 -104.88 -0.59 -1.37 16 7 C 0.14 3.43 5.48 -83.04 -0.46 2.97 16 8 C -0.19 -4.96 8.15 -38.34 -0.31 -5.27 16 9 C 0.12 3.24 5.62 -106.56 -0.60 2.65 16 10 C -0.45 -11.68 9.12 -37.65 -0.34 -12.02 16 11 H 0.08 2.02 7.90 -52.48 -0.41 1.61 16 12 C 0.08 1.87 5.21 -17.34 -0.09 1.78 16 13 N -0.78 -19.63 10.82 55.55 0.60 -19.03 16 14 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 15 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 16 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 17 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 18 C -0.28 -6.62 9.90 -38.67 -0.38 -7.01 16 19 C 0.10 2.28 11.15 -17.70 -0.20 2.08 16 20 N -0.56 -13.22 8.44 -9.95 -0.08 -13.30 16 21 C -0.02 -0.46 5.90 -104.32 -0.62 -1.07 16 22 C -0.10 -1.80 8.04 36.00 0.29 -1.51 16 23 C -0.13 -2.19 5.89 -104.52 -0.62 -2.80 16 24 C -0.10 -1.40 8.97 36.01 0.32 -1.07 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 27 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 28 H 0.12 1.67 6.28 -52.48 -0.33 1.34 16 29 H 0.12 2.32 7.96 -52.49 -0.42 1.90 16 30 H 0.13 3.45 5.97 -52.49 -0.31 3.14 16 31 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 32 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.55 6.51 -51.93 -0.34 1.21 16 36 H 0.05 0.82 6.74 -51.93 -0.35 0.47 16 37 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 38 H 0.06 0.85 7.52 -51.93 -0.39 0.46 16 39 H 0.06 0.85 6.71 -51.93 -0.35 0.50 16 LS Contribution 323.37 15.07 4.87 4.87 Total: -1.00 -28.48 323.37 -8.35 -36.83 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.95 Total: 7.82 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -3.58 Total: -25.31 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.52 Total: -32.34 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.18 Total: -4.83 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.48 -8.35 -36.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243993376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.614 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds